AaronDarling's aatol [28 articles] Export

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	Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption with 3D visualization [My Copy] BMC Bioinformatics, Vol. 8 (20 June 2007), 213. by Namshin Kim, Christopher Lee posted to aatol by AaronDarling on 2009-03-23 02:05:37 as along with 1 person and 1 group Einat structural_bioinformatics
	Paloverde: an OpenGL 3-D phylogeny browser. [My Copy] Bioinformatics (24 February 2006) by Michael J J. Sanderson posted to aatol by AaronDarling on 2009-03-23 02:04:42 as along with 4 people dparks aprasad eckart_bindewald akifumi
	Optimal, efficient reconstruction of phylogenetic networks with constrained recombination. [My Copy] Journal of bioinformatics and computational biology, Vol. 2, No. 1. (March 2004), pp. 173-213. by D. Gusfield, S. Eddhu, C. Langley posted to aatol by AaronDarling on 2009-03-23 02:03:09 as
	Multiple replication origins of the archaeon Halobacterium species NRC-1 [My Copy] Biochemical and Biophysical Research Communications, Vol. 302, No. 4. (21 March 2003), pp. 728-734. by R. Zhang posted to aatol by AaronDarling on 2009-03-23 02:01:46 as
	Expected Gene Order Distances and Model Selection in Bacteria. [My Copy] Bioinformatics (Oxford, England) (1 April 2008) by Daniel Dalevi, Niklas Eriksen posted to aatol by AaronDarling on 2009-03-23 01:59:22 as along with 4 people and 1 group maximilianh Ema cisevol sharpton BergmanLab
	The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (January 2008) by K. Liolios, K. Mavromatis, N. Tavernarakis, N. C. Kyrpides posted to aatol by AaronDarling on 2009-03-23 01:55:31 as along with 7 people Thaverkamp coela semin diamantis guhjy jmeppley stsaft
	Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 3. (16 January 2007), pp. 870-875. by Tal Dagan, William Martin posted to aatol by AaronDarling on 2009-03-23 01:54:16 as along with 2 people treangen operon
	Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 29. (22 July 2008), pp. 10039-10044. by Tal Dagan, Yael Artzy-Randrup, William Martin posted to aatol by AaronDarling on 2009-03-23 01:53:41 as along with 3 people treangen tomhebbron druvus
	GeneTRACE-reconstruction of gene content of ancestral species. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 11. (22 July 2003), pp. 1412-1416. by V. Kunin, C. A. Ouzounis posted to aatol by AaronDarling on 2009-03-23 01:52:50 as
	The net of life: reconstructing the microbial phylogenetic network. [My Copy] Genome research, Vol. 15, No. 7. (July 2005), pp. 954-959. by Victor Kunin, Leon Goldovsky, Nikos Darzentas, Christos A. Ouzounis posted to aatol by AaronDarling on 2009-03-23 01:51:51 as along with 4 people and 1 group michaelbarton mslima druvus operon LabDros
	ESTIMATING SPECIES TREES USING MULTIPLE-ALLELE DNA SEQUENCE DATA [My Copy] Evolution, Vol. 62, No. 8. (August 2008), pp. 2080-2091. by Liang Liu, Dennis K. Pearl, Robb T. Brumfield, Scott V. Edwards posted to aatol by AaronDarling on 2009-03-23 01:50:29 as along with 2 people lizbiogen druvus
	BEST: Bayesian estimation of species trees under the coalescent model [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2542-2543. by Liang Liu posted to aatol by AaronDarling on 2009-03-23 01:49:02 as along with 6 people lizbiogen robfsouza gjuggler druvus alexeid nuin
	A simple, fast, and accurate method of phylogenomic inference [My Copy] Genome Biology, Vol. 9, No. 10. (13 October 2008), R151. by Martin Wu, Jonathan Eisen posted to aatol by AaronDarling on 2009-03-23 01:47:10 as along with 12 people and 2 groups dakelley jeargle zwang cgaugain treangen Katje operon ellakat scryrps djkt aramata druvus microbiology_nijmegen iSEEM
	FastBLAST: Homology Relationships for Millions of Proteins [My Copy] PLoS ONE, Vol. 3, No. 10. (31 October 2008), e3589. by Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin posted to aatol by AaronDarling on 2009-03-23 01:46:02 as along with 4 people treangen natstreet druvus reyez
	MACHOS: Markov clusters of homologous subsequences. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008) by S. Wong, M. A. Ragan posted to aatol by AaronDarling on 2009-03-23 01:45:02 as along with 4 people operon treangen nuin gulkur
	Algorithm of OMA for large-scale orthology inference [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (04 December 2008), 518. by Alexander Roth, Gaston Gonnet, Christophe Dessimoz posted to aatol by AaronDarling on 2009-03-23 01:43:33 as along with 6 people dfdong alpae cgaugain grahamc barriot druvus
	Phylogenetic and functional assessment of orthologs inference projects and methods. [My Copy] PLoS computational biology, Vol. 5, No. 1. (16 January 2009), e1000262. by Adrian M. Altenhoff, Christophe Dessimoz posted to aatol by AaronDarling on 2009-03-23 01:43:08 as along with 10 people and 1 group avilella skembel isimpson hpaces natstreet alpae kshameer djkt bpcusack druvus Ensembl Compara citations
	Estimating true evolutionary distances under the DCJ model. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008) by Y. Lin, B. M. Moret posted to aatol by AaronDarling on 2009-03-23 01:41:07 as along with 1 person nuin
	Sorting Genomes with Insertions, Deletions and Duplications by DCJ [My Copy] Comparative Genomics (2008), pp. 170-183. by Sophia Yancopoulos, Richard Friedberg posted to aatol by AaronDarling on 2009-03-23 01:38:52 as
	Descendants of Whole Genome Duplication within Gene Order Phylogeny. [My Copy] Journal of computational biology : a journal of computational molecular cell biology (12 September 2008) by Chunfang Zheng, Qian Zhu, David Sankoff posted to aatol by AaronDarling on 2009-03-23 01:37:28 as along with 2 people druvus nuin
	Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes. [My Copy] Journal of computational biology : a journal of computational molecular cell biology (12 September 2008) by Max A A. Alekseyev posted to aatol by AaronDarling on 2009-03-23 01:35:31 as along with 1 person nuin
	A Unifying View of Genome Rearrangements [My Copy] Algorithms in Bioinformatics (2006), pp. 163-173. by Anne Bergeron, Julia Mixtacki, Jens Stoye posted to aatol by AaronDarling on 2009-03-23 01:34:24 as
	The infinite sites model of genome evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 38. (23 September 2008), pp. 14254-14261. by Jian Ma, Aakrosh Ratan, Brian J. Raney, Bernard B. Suh, Webb Miller, David Haussler posted to aatol by AaronDarling on 2009-03-23 01:32:17 as along with 8 people and 1 group sharpton Thaverkamp ilyashl druvus operon inesdesantiago stajich stringertheory Mycology
	A Bayesian approach to the estimation of ancestral genome arrangements. [My Copy] Molecular phylogenetics and evolution, Vol. 36, No. 2. (August 2005), pp. 214-223. by B. Larget, J. B. Kadane, D. L. Simon posted to aatol by AaronDarling on 2009-03-23 01:29:14 as along with 2 people druvus treangen
	In silico identification of genes in bacteriophage DNA. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 502 (2009), pp. 57-89. by A. M. Kropinski, M. Borodovsky, T. J. Carver, et al.A. M. Cerdeño-Tárraga, A. Darling, A. Lomsadze, P. Mahadevan, P. Stothard, D. Seto, G. Van Domselaar, D. S. Wishart posted to aatol by AaronDarling on 2009-03-23 01:27:25 as
	Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_1. (11 January 2008), pp. D519-523. by Jeremy D. Glasner, Guy Plunkett, Bradley D. Anderson, et al.David J. Baumler, Bryan S. Biehl, Valerie Burland, Eric L. Cabot, Aaron E. Darling, Bob Mau, Eric C. Neeno-Eckwall, David Pot, Yu Qiu, Anna I. Rissman, Sara Worzella, Sam Zaremba, Joel Fedorko, Tom Hampton, Paul Liss, Michael Rusch, Matthew Shaker, Lorie Shaull, Panna Shetty, Silpa Thotakura, Jon Whitmore, Frederick R. Blattner, John M. Greene, Nicole T. Perna posted to aatol by AaronDarling on 2009-03-23 01:26:42 as along with 1 person druvus
	Genome rearrangement by the double cut and join operation. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 452 (2008), pp. 385-416. by R. Friedberg, A. E. Darling, S. Yancopoulos posted to aatol by AaronDarling on 2009-03-23 01:25:37 as
	Are Protein Domains Modules of Lateral Genetic Transfer? [My Copy] PLoS ONE, Vol. 4, No. 2. (20 February 2009), e4524. by Cheong X. Chan, Aaron E. Darling, Robert G. Beiko, Mark A. Ragan posted to aatol by AaronDarling on 2009-03-23 01:24:21 as along with 3 people chancx druvus zwang

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recombination	58
nsfprop	54
genomerearrangement	54
evolution	54
genomeevolution	33
populationgenetics	30
phylogenetics	28
aatol	28
alignment	25
horizontaltransfer	21
microbialevolution	19
genomecomparison	18
aaanew	18
dna-replication	16
aarchaeansf	15
speciestree	13
genomesequencing	12
speciation	12
yersinia	10
wabi	10
aaarchaeansf	9
coalescent	9
mcmc	8
inversions	5
statisticalalignment	5
randomwalks	4
repeats	4
motifdetection	4
geneconversion	3
genomeannotation	3
aaaa	3
biodiversity	2
hpc	2
visualization	2
metagenomics	2
cog	2
assembly	2
optical-map	2
hmm	1
alignmentwabi	1
virus	1
coregenomehypothesis	1
mrbayes	1
noncoding-rna	1
sequence	1
polony	1
positiveselection	1
orthology	1

AaronDarling's aatol [28 articles] Export

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