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AlexanderPico's pathways [17 articles]

Recent papers added to AlexanderPico's library classified by the tag pathways. You can also see everyone's pathways.
  • Presenting and exploring biological pathways with PathVisio
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Martijn van Iersel, Thomas Kelder, Alexander Pico, Kristina Hanspers, Susan Coort, Bruce Conklin, Chris Evelo
  • The public road to high-quality curated biological pathways.
    Drug discovery today (21 July 2008)
    by Michiel E E Adriaens, Magali Jaillard, Andra Waagmeester, Susan L M L Coort, Alex R R Pico, Chris T A T Evelo
  • WikiPathways: Pathway Editing for the People
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e184.
    by Alexander R Pico, Thomas Kelder, Martijn P van Iersel, Kristina Hanspers, Bruce R Conklin, Chris Evelo
  • The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
    Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 524-531.
    by M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, BJ Bornstein, D Bray, A Cornish-Bowden, AA Cuellar, S Dronov, ED Gilles, M Ginkel, V Gor, II Goryanin, WJ Hedley, TC Hodgman, JH Hofmeyr, PJ Hunter, NS Juty, JL Kasberger, A Kremling, U Kummer, N Le Novère, LM Loew, D Lucio, P Mendes, E Minch, ED Mjolsness, Y Nakayama, MR Nelson, PF Nielsen, T Sakurada, JC Schaff, BE Shapiro, TS Shimizu, HD Spence, J Stelling, K Takahashi, M Tomita, J Wagner, J Wang,
  • Pathguide: a pathway resource list.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by GD Bader, MP Cary, C Sander
  • Comparative integromics on non-canonical WNT or planar cell polarity signaling molecules: transcriptional mechanism of PTK7 in colorectal cancer and that of SEMA6A in undifferentiated ES cells.
    International Journal of Molecular Medicine, Vol. 20, No. 3. (September 2008), pp. 405-409.
    by M Katoh, M Katoh
    posted to development pathways transcription_factors by AlexanderPico on 2008-06-02 22:37:44 as **
  • Towards zoomable multidimensional maps of the cell
    Nature Biotechnology, Vol. 25, No. 5. (04 May 2007), pp. 547-554.
    by Zhenjun Hu, Joe Mellor, Jie Wu, Minoru Kanehisa, Joshua M Stuart, Charles Delisi
  • Extending pathways based on gene lists using InterPro domain signatures
    BMC Bioinformatics, Vol. 9 (04 January 2008), 3.
    by Florian Hahne, Alexander Mehrle, Dorit Arlt, Annemarie Poustka, Stefan Wiemann, Tim Beissbarth
  • Pathway evolution, structurally speaking
    Current Opinion in Structural Biology, Vol. 12, No. 3. (1 June 2002), pp. 374-382.
    by Stuart C Rison, Janet M Thornton
  • SPIKE - a database, visualization and analysis tool of cellular signaling pathways
    BMC Bioinformatics, Vol. 9 (20 February 2008), 110.
    by Ran Elkon, Rita Vesterman, Nira Amit, Igor Ulitsky, Idan Zohar, Mali Weisz, Gilad Mass, Nir Orlev, Giora Sternberg, Ran Blekhman, Jackie Assa, Yosef Shiloh, Ron Shamir
  • Pathway databases.
    Ann N Y Acad Sci, Vol. 1020 (May 2004), pp. 77-91.
    by CF Schaefer
  • Pathway information for systems biology.
    FEBS Lett, Vol. 579, No. 8. (21 March 2005), pp. 1815-1820.
    by MP Cary, GD Bader, C Sander
  • A Global Pathway Crosstalk Network
    Bioinformatics (23 April 2008), btn200.
    by Yong Li, Pankaj Agarwal, Dilip Rajagopalan
  • The PANTHER database of protein families, subfamilies, functions and pathways.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
  • cPath: open source software for collecting, storing, and querying biological pathways
    BMC Bioinformatics, Vol. 7 (13 November 2006), 497.
    by Ethan G Cerami, Gary D Bader, Benjamin Gross, Chris Sander
  • Reactome: a knowledgebase of biological pathways and processes
    Genome Biology, Vol. 8 (16 March 2007), R39.
    by Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Geeta Joshi-Tope, Gopal Gopinath, David Croft, Bernard de Bono, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein
  • KEGGanim: pathway animations for high-throughput data.
    Bioinformatics (1 December 2007)
    by Priit Adler, Jüri Reimand, Jürgen Jänes, Raivo Kolde, Hedi Peterson, Jaak Vilo
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