SIC: A tool to detect short inverted segments in a biological sequence. Export

@article{citeulike:325399, abstract = {The web software SIC provides a tool to search for short inverted segments (length 3-5000 bp) in a DNA sequence. The sequence is assumed to follow a Markov model. A statistic which is sensitive to inversion is presented. Searching inverted segments is done by a scanning approach after the user specifies the size of the scanning window and the order of the Markov chain. A list of the highest score segments is given with an assessment of the randomness of the result. SIC can be accessed via the URL: http://stat.genopole.cnrs.fr/SIC/.}, address = {Laboratoire Statistique et G\'{e}nome, Tour Evry 2, 91000 Evry, France. robelin@genopole.cnrs.fr}, author = {Robelin, D. and Richard, H. and Prum, B.}, citeulike-article-id = {325399}, citeulike-linkout-0 = {http://view.ncbi.nlm.nih.gov/pubmed/12824390}, citeulike-linkout-1 = {http://www.hubmed.org/display.cgi?uids=12824390}, day = {1}, issn = {1362-4962}, journal = {Nucleic Acids Res}, keywords = {bioinformatic, inversion, markov, sequence}, month = {July}, number = {13}, pages = {3669--3671}, posted-at = {2008-12-07 17:47:00}, priority = {2}, title = {SIC: A tool to detect short inverted segments in a biological sequence.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/12824390}, volume = {31}, year = {2003} }

TY - JOUR ID - citeulike:325399 L3 - citeulike-article-id:325399 N2 - The web software SIC provides a tool to search for short inverted segments (length 3-5000 bp) in a DNA sequence. The sequence is assumed to follow a Markov model. A statistic which is sensitive to inversion is presented. Searching inverted segments is done by a scanning approach after the user specifies the size of the scanning window and the order of the Markov chain. A list of the highest score segments is given with an assessment of the randomness of the result. SIC can be accessed via the URL: http://stat.genopole.cnrs.fr/SIC/. IS - 13 JF - Nucleic Acids Res SN - 1362-4962 AD - Laboratoire Statistique et Génome, Tour Evry 2, 91000 Evry, France. robelin@genopole.cnrs.fr EP - 3671 TI - SIC: A tool to detect short inverted segments in a biological sequence. VL - 31 SP - 3669 KW - bioinformatic KW - inversion KW - markov KW - sequence AU - Robelin, D AU - Richard, H AU - Prum, B PY - 2003/07/01/ UR - http://view.ncbi.nlm.nih.gov/pubmed/12824390 ER -