Ayest's alignment [18 articles] Export

Recent papers added to Ayest's library classified by the tag alignment. You can also see everyone's alignment.

	SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model [My Copy] Genome Research, Vol. 13, No. 3. (1 March 2003), pp. 496-502. by Marina Alexandersson, Simon Cawley, Lior Pachter posted to alignment hmm statistic by Ayest on 2007-07-12 13:08:38 as along with 3 people and 1 group stharward azazello mdimon MBLAB
	EUGENE'HOM: A generic similarity-based gene finder using multiple homologous sequences. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3742-3745. by S. Foissac, P. Bardou, A. Moisan, M. J. Cros, T. Schiex posted to software bia alignment by Ayest on 2007-01-24 08:56:52 as along with 1 person wenhan
	Statistical significance in biological sequence analysis. [My Copy] Brief Bioinform, Vol. 7, No. 1. (March 2006), pp. 2-24. by A. Y. Mitrophanov, M. Borodovsky posted to alignment reviews sequence statistic by Ayest on 2006-09-26 13:14:45 as along with 4 people druvus treangen xili03 wenhan
	Evolution at the nucleotide level: the problem of multiple whole-genome alignment [My Copy] Hum. Mol. Genet., Vol. 15, No. suppl_1. (15 April 2006), pp. R51-56. by Colin N. Dewey, Lior Pachter posted to alignment whole_genome by Ayest on 2006-09-21 09:28:26 as along with 9 people and 2 groups druvus skembel treangen operon tny dchughes AaronDarling echinotrix Neeperando G4ID Genetics-of-Gambling
	MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (08 June 2006), 292. by Jun Wang, Peter Keightley, Toby Johnson posted to alignment bioinformatic by Ayest on 2006-06-11 12:28:18 as along with 6 people and 1 group timflutre druvus gjuggler dpollard papamicd bozdagd EisenLab
	A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (22 May 2006) by Anne-Kathrin K. Schultz, Ming Zhang, Thomas Leitner, et al.Carla Kuiken, Bette Korber, Burkhard Morgenstern, Mario Stanke posted to alignment bioinformatic markov by Ayest on 2006-06-05 18:21:29 as
	Benchmarking tools for the alignment of functional noncoding DNA [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (2004), pp. 6-6. by D. A. Pollard, C. M. Bergman, J. Stoye, S. E. Celniker, M. B. Eisen posted to alignment by Ayest on 2006-03-06 16:48:47 as along with 1 person and 3 groups ppgardne MathBio Bioinformatics microRNA
	BLAT--the BLAST-like alignment tool. [My Copy] Genome research, Vol. 12, No. 4. (1 April 2002), pp. 656-664. by W. James Kent posted to alignment whole_genome by Ayest on 2006-02-28 09:29:15 as along with 36 people and 3 groups rshe dchughes rdowell gwallau druvus aprasad maria_hauser n00c sficklin Thaverkamp cpwardell daveGerrard coela daforerog pwais umit mmartin paszkows operon miguel pcahan1 indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz yoanjacquemin talponer bozdagd gpappas LabDros BergmanLab EisenLab
	Strategies and Tools for Whole-Genome Alignments [My Copy] Genome Res., Vol. 13, No. 1. (1 January 2003), pp. 73-80. by Olivier Couronne, Alexander Poliakov, Nicolas Bray, et al.Tigran Ishkhanov, Dmitriy Ryaboy, Edward Rubin, Lior Pachter, Inna Dubchak posted to alignment evolution whole_genome by Ayest on 2006-02-28 09:24:59 as along with 2 people operon olivierkuro
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to alignment bioinformatic by Ayest on 2006-02-24 12:45:17 as along with 73 people and 6 groups rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Non-approximability results for optimization problems on bounded degree instances [My Copy] In STOC '01: Proceedings of the thirty-third annual ACM symposium on Theory of computing (2001), pp. 453-461. by Luca Trevisan posted to alignment bibtex-import bioinformatic by Ayest on 2006-02-24 12:02:57 as
	Hardness of approximation for non-overlapping local alignments [My Copy] Discrete Appl. Math., Vol. 137, No. 3. (March 2004), pp. 293-309. by Hiroyuki Nagashima, Koichi Yamazaki posted to alignment bibtex-import bioinformatic by Ayest on 2006-02-24 12:02:20 as
	Comparative genomics, minimal gene-sets and the last universal common ancestor. [My Copy] Nat Rev Microbiol, Vol. 1, No. 2. (November 2003), pp. 127-136. by E. V. Koonin posted to alignment evolution by Ayest on 2006-02-20 12:53:49 as along with 4 people and 2 groups ana dayjm radek gbart structural_bioinformatics Bioinformatics
	Detecting overlapping coding sequences in virus genomes. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (16 February 2006) by Andrew E. Firth, Chris M. Brown posted to alignment bioinformatic sequence by Ayest on 2006-02-20 10:10:14 as along with 1 person and 1 group vwchan beta
	A novel approach to remote homology detection: jumping alignments [My Copy] J Comput Biol, Vol. 9, No. 5. (2002), pp. 747-760. by R. Spang, M. Rehmsmeier, J. Stoye posted to alignment bioinformatic by Ayest on 2006-02-18 14:28:08 as along with 1 person and 3 groups ppgardne MathBio Bioinformatics microRNA
	Detecting interspecific recombination with a pruned probabilistic divergence measure [My Copy] Bioinformatics, Vol. 21, No. 9. (2005), pp. 1797-806. by Dirk Husmeier, Frank Wright posted to alignment bibtex-import bioinformatic evolution by Ayest on 2005-09-10 19:11:52 as
	Comparison of Biosequences [My Copy] Advances in Applied Mathematics, Vol. 2 (1981), pp. 482-489. by T. F. Smith, M. S. Waterman posted to alignment bibtex-import sequence by Ayest on 2005-09-10 19:11:50 as
	A general method applicable to the search for similarities in the amino acid sequence of two proteins. [My Copy] J. Mol. Biol., Vol. 48 (1970), pp. 443-453. by S. B. Needleman, C. D. Wunsch posted to alignment bibtex-import sequence by Ayest on 2005-09-10 19:11:50 as

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bibtex-import	112
bioinformatic	67
statistic	56
software	51
snp	49
qtl	43
sequence	36
markov	32
reviews	30
linkage	26
evolution	24
mrf	23
association	20
haplotype	20
alignment	18
detection	18
error	13
microarray	13
pedigree	12
recombination	12
spatial	12
mapping	10
medical	10
genetic	8
hmm	8
lgc	8
r	8
animal	7
whole_genome	7
epidemiology	6
inversion	6
marker	6
image	5
mcmc	5
porc	5
probability	5
tma	5
variables_selection	5
bayesian_network	4
database	4
network	4
partition_function	4
polymorphism	4
classification	3
computation	3
convergence_rate	3
cytogenetic	3
data	3
dna	3
eqtl	3
jc_pliage	3
local_score	3
map	3
pooling	3
process	3
regression	3
resequencage	3
bovin	2
cancer	2
coupling	2
ecology	2
epigenetic	2
epistasis	2
extreme_value	2
gaussian	2
genetical_transfert	2
ibd	2
ld	2
motif	2
multiqtl	2
pathway	2
population_genetic	2
quantitative_genetic	2
selection	2
variational	2
visualization	2
anr	1
application	1
bia	1
chicken	1
coalescent	1
contour	1
cow	1
cpg	1
est	1
expression	1
genomic_selection	1
graph	1
molecular	1
multitest	1
nutrition	1
ovins	1
population	1
prp	1
rabbit	1
rna	1
saga	1
scan	1
selection_genomic	1
semi_markov	1
splicing	1
viterbi	1

Ayest's alignment [18 articles] Export

Ayest's tags