Ayest's bioinformatic [67 articles] Export

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	Generations of sequencing technologies. [My Copy] Genomics, Vol. 93, No. 2. (21 February 2009), pp. 105-111. by Erik Pettersson, Joakim Lundeberg, Afshin Ahmadian posted to bioinformatic resequencage by Ayest on 2009-07-31 13:03:44 as along with 6 people guhjy behindtherabbit daed ImranRaoufMalik druvus jdbowes
	Asymptotically increasing compliance of genomes with Chargaff's second parity rules through inversions and inverted transpositions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 47. (21 November 2006), pp. 17828-17833. by G. Albrecht-Buehler posted to bioinformatic inversion sequence by Ayest on 2008-12-18 10:04:37 as
	DNA sequence drives nucleosome occupancy of yeast promoters [My Copy] In JOBIM (2006), pp. 2783-2784. by V. Miele, C. Vaillant, Y. D`aubenton, D. Robelin, B. Prum, C. Thermes posted to bioinformatic by Ayest on 2008-12-07 18:05:50 as
	SIC: A tool to detect short inverted segments in a biological sequence. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3669-3671. by D. Robelin, H. Richard, B. Prum posted to bioinformatic inversion markov sequence by Ayest on 2008-12-07 17:47:00 as
	seq++: analyzing biological sequences with a range of Markov-related models [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2783-2784. by Vincent Miele, Pierre-Yves Bourguignon, David Robelin, Gregory Nuel, Hugues Richard posted to bioinformatic markov sequence by Ayest on 2008-12-07 17:46:18 as
	Prediction of complete gene structures in human genomic DNA. [My Copy] J Mol Biol, Vol. 268, No. 1. (25 April 1997), pp. 78-94. by C. Burge, S. Karlin posted to bioinformatic hmm sequence by Ayest on 2008-11-29 11:11:42 as along with 11 people and 2 groups jmartin49 pcahan1 indigoviolet kaspermunch dullhunk dquest wenhan GustavoLacerda nicholso nklee bandrewfox Bioinformatics EisenLab
	Microbial gene identification using interpolated Markov models [My Copy] Nucl. Acids Res., Vol. 26, No. 2. (15 January 1998), pp. 544-548. by S. L. Salzberg, A. L. Delcher, S. Kasif, O. White posted to bioinformatic hmm sequence by Ayest on 2008-11-29 11:08:50 as along with 7 people and 1 group tfuji ziquje gg bnchakraborty bluto jguinney wenhan MBLAB
	Improved microbial gene identification with GLIMMER. [My Copy] Nucleic acids research, Vol. 27, No. 23. (1 December 1999), pp. 4636-4641. by A. L. Delcher, D. Harmon, S. Kasif, O. White, S. L. Salzberg posted to bioinformatic hmm sequence by Ayest on 2008-11-29 11:06:25 as along with 8 people azazello rneches tfuji nedwards ziquje dquest gelack wenhan
	Prediction of primate splice site using inhomogeneous Markov chain and neural network. [My Copy] DNA Cell Biol, Vol. 26, No. 7. (July 2007), pp. 477-483. by L. Liu, Y. K. Ho, S. Yau posted to bioinformatic markov by Ayest on 2008-02-27 10:00:39 as
	Genome browsing with Ensembl: a practical overview. [My Copy] Briefings in functional genomics & proteomics, Vol. 6, No. 3. (29 September 2007), pp. 202-219. by G. Spudich, X. M. Fernández-Suárez, E. Birney posted to bioinformatic whole_genome by Ayest on 2007-12-03 10:04:02 as along with 1 person guhjy
	A Primer on Python for Life Science Researchers [My Copy] PLoS Comput Biol, Vol. 3, No. 11. (30 November 2007), e199. by Sebastian Bassi posted to bioinformatic software by Ayest on 2007-11-30 09:33:19 as along with 16 people and 2 groups ahmetbakan fgibson najwvandijk winterschlaefer eesruiz daforerog scryrps giovenko druvus guhjy dullhunk sobolevnrm Ema jfr higueruelo dgroth ImagCom - Biomedical Text Computing baker-group
	Gepard: a rapid and sensitive tool for creating dotplots on genome scale [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 1026-1028. by Jan Krumsiek, Roland Arnold, Thomas Rattei posted to bioinformatic software by Ayest on 2007-05-03 08:43:33 as
	Convergent evolution of genomic imprinting in plants and mammals. [My Copy] Trends in genetics : TIG, Vol. 23, No. 4. (April 2007), pp. 192-199. by Robert Feil, Frédéric Berger posted to animal bioinformatic epigenetic evolution polymorphism by Ayest on 2007-04-03 16:11:30 as along with 3 people taylor73 debages taka
	Farm animal genomics and informatics: an update. [My Copy] Nucleic Acids Res, Vol. 33, No. 19. (2005), pp. 6308-6318. by A. Fadiel, I. Anidi, K. D. Eichenbaum posted to bioinformatic animal by Ayest on 2007-01-29 08:26:08 as
	Automated Querying of Genome Databases [My Copy] PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e1. by Peter Schattner posted to software snp bioinformatic by Ayest on 2007-01-29 07:46:39 as along with 11 people and 1 group natstreet bertelsen urgi daforerog polivares giovenko inesdesantiago druvus cisevol guhjy jfr BergmanLab
	ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes [My Copy] Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 122-124. by Gabriela Loots, Ivan Ovcharenko posted to bioinformatic evolution recombination by Ayest on 2006-12-20 08:47:10 as along with 2 people and 1 group guhjy grahamc Bioinformatics
	A heuristic Bayesian method for segmenting DNA sequence alignments and detecting evidence for recombination and gene conversion. [My Copy] Stat Appl Genet Mol Biol, Vol. 5 (2006) by A. Kedzierska, D. Husmeier posted to bioinformatic recombination statistic by Ayest on 2006-12-18 18:20:53 as along with 1 person and 1 group dpollard EisenLab
	QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (09 October 2006), 438. by Jifeng Tang, Ben Vosman, Roeland Voorrips, C. Gerard van der Linden, Jack Leunissen posted to bioinformatic marker snp by Ayest on 2006-11-27 08:32:25 as along with 5 people and 1 group rs orzenil csrocha farhat guhjy Bioinformatics
	The overshoot of a random walk with negative drift [My Copy] Statistics & Probability Letters, Vol. 77, No. 2. (15 January 2007), pp. 158-165. by Qihe Tang posted to bioinformatic local_score statistic by Ayest on 2006-11-20 08:40:29 as
	Adding sequence context to a Markov background model improves the identification of regulatory elements [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2870-2875. by Nak-Kyeong Kim, Kannan Tharakaraman, John L. Spouge posted to bioinformatic markov sequence by Ayest on 2006-11-17 15:46:48 as along with 1 person hendrik85
	Open source tools and toolkits for bioinformatics: significance, and where are we? [My Copy] Brief Bioinform, Vol. 7, No. 3. (September 2006), pp. 287-296. by J. E. Stajich, H. Lapp posted to bioinformatic reviews software by Ayest on 2006-11-07 12:05:43 as along with 15 people and 2 groups kiekyon kshameer Cortel Vincent_Rouilly daforerog druvus viktor21614 krapnik yas eweaver indigoviolet moborg dgront stajich george_g EisenLab T_lab
	Efficient sorting of genomic permutations by translocation, inversion and block interchange. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3340-3346. by S. Yancopoulos, O. Attie, R. Friedberg posted to bioinformatic mapping recombination by Ayest on 2006-11-06 15:18:38 as along with 1 person AaronDarling
	Statistical signals in bioinformatics. [My Copy] Proc Natl Acad Sci U S A (12 September 2005) by Samuel Karlin posted to bioinformatic sequence statistic by Ayest on 2006-10-27 16:11:54 as along with 5 people and 2 groups aalibes bsmagic aaronsmith quianominorleo ardalby Bioinformatics bioinplant
	DNA sequence drives nucleosome occupancy of yeast promoters [My Copy] JOBIM (2006) by Vincent Miele, Cédric Vaillant, Yves D’aubenton-Carafa, David Robelin, Bernard Prum, Claude Thermes posted to bioinformatic sequence by Ayest on 2006-07-12 13:08:57 as
	Haploview: analysis and visualization of LD and haplotype maps. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 2. (15 January 2005), pp. 263-265. by J. C. Barrett, B. Fry, J. Maller, M. J. Daly posted to bioinformatic haplotype software by Ayest on 2006-07-11 15:17:19 as along with 4 people guhjy xingxu daforerog mailund
	Detecting interspecific recombination with a pruned probabilistic divergence measure. [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1797-1806. by D. Husmeier, F. Wright, I. Milne posted to bioinformatic sequence statistic by Ayest on 2006-06-11 19:24:32 as along with 1 person aprasad
	MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (08 June 2006), 292. by Jun Wang, Peter Keightley, Toby Johnson posted to alignment bioinformatic by Ayest on 2006-06-11 12:28:18 as along with 6 people and 1 group timflutre druvus gjuggler dpollard papamicd bozdagd EisenLab
	Genome sequence of Yersinia pestis, the causative agent of plague. [My Copy] Nature, Vol. 413, No. 6855. (4 October 2001), pp. 523-527. by J. Parkhill, B. W. Wren, N. R. Thomson, et al.R. W. Titball, M. T. Holden, M. B. Prentice, M. Sebaihia, K. D. James, C. Churcher, K. L. Mungall, S. Baker, D. Basham, S. D. Bentley, K. Brooks, A. M. Cerdeño-Tárraga, T. Chillingworth, A. Cronin, R. M. Davies, P. Davis, G. Dougan, T. Feltwell, N. Hamlin, S. Holroyd, K. Jagels, A. V. Karlyshev, S. Leather, S. Moule, P. C. Oyston, M. Quail, K. Rutherford, M. Simmonds, J. Skelton, K. Stevens, S. Whitehead, B. G. Barrell posted to bioinformatic sequence by Ayest on 2006-06-11 11:25:39 as along with 2 people and 1 group AaronDarling devender FlowCytometry
	Polarisation of prokaryotic chromosomes. [My Copy] Curr Opin Microbiol, Vol. 6, No. 2. (April 2003), pp. 101-108. by J. R. Lobry, J. M. Louarn posted to bioinformatic evolution sequence by Ayest on 2006-06-11 11:21:48 as
	Optimized mixed Markov models for motif identification [My Copy] BMC Bioinformatics, Vol. 7 (02 June 2006), 279. by Weichun Huang, David M. Umbach, Uwe Ohler, Leping Li posted to bioinformatic markov sequence by Ayest on 2006-06-08 10:39:26 as along with 1 person nklee
	Strong Regional Biases in Nucleotide Substitution in the Chicken Genome [My Copy] Molecular Biology and Evolution, Vol. 23, No. 6. (June 2006), pp. 1203-1216. by Webster, T. Matthew, Axelsson, Erik, Ellegren, Hans posted to bioinformatic evolution by Ayest on 2006-06-06 11:55:32 as
	A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (22 May 2006) by Anne-Kathrin K. Schultz, Ming Zhang, Thomas Leitner, et al.Carla Kuiken, Bette Korber, Burkhard Morgenstern, Mario Stanke posted to alignment bioinformatic markov by Ayest on 2006-06-05 18:21:29 as
	Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks. [My Copy] PLoS Biol, Vol. 3, No. 12. (15 November 2005) by Victor Neduva, Rune Linding, Isabelle Su-Angrand, et al.Alexander Stark, Federico de D. Masi, Toby J J. Gibson, Joe Lewis, Luis Serrano, Robert B B. Russell posted to bioinformatic jc_pliage network by Ayest on 2006-05-30 13:29:11 as along with 10 people and 1 group rklancer okarsligil bicko xwbcn drastic ezotenko grahamc Evangelia oelemento chad_davis Bioinformatics
	Hidden Markov Models, grammars, and biology: a tutorial. [My Copy] J Bioinform Comput Biol, Vol. 3, No. 2. (April 2005), pp. 491-526. by S. Mukherjee, S. Mitra posted to bioinformatic markov reviews by Ayest on 2006-05-02 14:56:17 as along with 4 people flips hpaces svozil berthoums
	Clustering of gene locations [My Copy] Computational Statistics & Data Analysis, Vol. 50, No. 10. (20 June 2006), pp. 2920-2932. by Eli Walters, Naomi S. Altman, Laura Elnitski posted to bioinformatic statistic by Ayest on 2006-04-29 16:43:09 as
	Solvable models of neighbor-dependent nucleotide substitution processes [My Copy] (3 Oct 2005) by Jean Bérard, Jean-Baptiste Gouéré, Didier Piau posted to bioinformatic evolution markov statistic by Ayest on 2006-04-29 14:00:27 as along with 1 person ansobol
	DNA events. An RNA microcosm. [My Copy] Science, Vol. 297, No. 5589. (20 September 2002), pp. 2002-2003. by D. Baulcombe posted to bioinformatic rna by Ayest on 2006-04-25 10:30:46 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Pooling in systems biology becomes smart [My Copy] Nature Methods, Vol. 3, No. 3., pp. 161-162. by Nicolas Thierry-Mieg posted to bioinformatic pooling by Ayest on 2006-04-19 08:36:32 as along with 1 person guhjy
	A pooling-deconvolution strategy for biological network elucidation [My Copy] Nature Methods, Vol. 3, No. 3. (17 February 2006), pp. 183-189. by Fulai Jin, Tony Hazbun, Gregory A. Michaud, et al.Michael Salcius, Paul F. Predki, Stanley Fields, Jing Huang posted to bioinformatic network pooling by Ayest on 2006-04-19 08:35:32 as along with 4 people gurkanbebek cjeans zwang guhjy
	A new pooling strategy for high-throughput screening: the Shifted Transversal Design. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by N. Thierry-Mieg posted to bioinformatic pooling by Ayest on 2006-04-19 08:32:56 as along with 1 person rmk
	SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006), 43. by Tim Van den Bulcke, Koenraad Van Leemput, Bart Naudts, et al.Piet van Remortel, Hongwu Ma, Alain Verschoren, Bart De Moor, Kathleen Marchal posted to bioinformatic jc_pliage microarray by Ayest on 2006-04-18 09:07:01 as along with 6 people poirel tonamswish ptrobajo tvdbulck frohike ajgentles
	Statistical practice in high-throughput screening data analysis. [My Copy] Nature biotechnology, Vol. 24, No. 2. (07 February 2006), pp. 167-175. by Nathalie Malo, James A. Hanley, Sonia Cerquozzi, Jerry Pelletier, Robert Nadon posted to bioinformatic jc_pliage statistic by Ayest on 2006-03-23 15:53:01 as along with 6 people and 2 groups aviad_work jerome Yanno lujiec cckan rmk Bioinformatics ThinkBridge
	Partition function and base pairing probabilities of RNA heterodimers [My Copy] Algorithms for Molecular Biology, Vol. 1, 3. by Stephan H. Bernhart, Hakim Tafer, Ulrike Muckstein, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker posted to bioinformatic partition_function by Ayest on 2006-03-21 09:23:47 as
	Refinement of optical map assemblies (original paper). [My Copy] Bioinformatics (24 February 2006) by Anton Valouev, Yu Zhang, David C C. Schwartz, Michael S S. Waterman posted to bioinformatic evolution markov sequence by Ayest on 2006-03-05 19:39:32 as
	Sequence-Dependent Base Pair Opening in DNA Double Helix. [My Copy] Biophys J (24 February 2006) by Andrew Krueger, Ekaterina Protozanova, Maxim D D. Frank-Kamenetskii posted to bioinformatic sequence by Ayest on 2006-03-05 19:37:17 as along with 1 person operon
	Genome annotation past, present, and future: how to define an ORF at each locus. [My Copy] Genome Res, Vol. 15, No. 12. (December 2005), pp. 1777-1786. by M. R. Brent posted to bioinformatic reviews by Ayest on 2006-02-27 15:46:13 as along with 6 people and 1 group timhubbard jasontsai orzenil textoris indigoviolet wenhan EisenLab
	The Fragile Breakage versus Random Breakage Models of Chromosome Evolution [My Copy] PLoS Comp bio, Vol. 2, No. 2., e14. by Qian Peng, Pavel A. Pevzner, Glenn Tesler posted to bioinformatic evolution recombination by Ayest on 2006-02-25 09:24:24 as
	Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons From Human, Mouse, and Rat Genomes [My Copy] Genome Res., Vol. 14, No. 4. (1 April 2004), pp. 507-516. by Guillaume Bourque, Pavel A. Pevzner, Glenn Tesler posted to bioinformatic recombination by Ayest on 2006-02-25 09:18:42 as along with 4 people balajis gpalidwor AaronDarling Neeperando
	Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages. [My Copy] Genome Res, Vol. 15, No. 1. (January 2005), pp. 98-110. by G. Bourque, E. M. Zdobnov, P. Bork, P. A. Pevzner, G. Tesler posted to bioinformatic evolution recombination by Ayest on 2006-02-25 09:16:01 as along with 1 person maximilianh
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to alignment bioinformatic by Ayest on 2006-02-24 12:45:17 as along with 71 people and 6 groups sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology

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bibtex-import	112
bioinformatic	67
statistic	56
software	51
snp	49
qtl	43
sequence	36
markov	32
reviews	30
linkage	26
evolution	24
mrf	23
association	20
haplotype	20
alignment	18
detection	18
error	13
microarray	13
pedigree	12
recombination	12
spatial	12
mapping	10
medical	10
genetic	8
hmm	8
lgc	8
r	8
animal	7
whole_genome	7
epidemiology	6
inversion	6
marker	6
image	5
mcmc	5
porc	5
probability	5
tma	5
variables_selection	5
bayesian_network	4
database	4
network	4
partition_function	4
polymorphism	4
classification	3
computation	3
convergence_rate	3
cytogenetic	3
data	3
dna	3
eqtl	3
jc_pliage	3
local_score	3
map	3
pooling	3
process	3
regression	3
resequencage	3
bovin	2
cancer	2
coupling	2
ecology	2
epigenetic	2
epistasis	2
extreme_value	2
gaussian	2
genetical_transfert	2
ibd	2
ld	2
motif	2
multiqtl	2
pathway	2
population_genetic	2
quantitative_genetic	2
selection	2
variational	2
visualization	2
anr	1
application	1
bia	1
chicken	1
coalescent	1
contour	1
cow	1
cpg	1
est	1
expression	1
genomic_selection	1
graph	1
molecular	1
multitest	1
nutrition	1
ovins	1
population	1
prp	1
rabbit	1
rna	1
saga	1
scan	1
selection_genomic	1
semi_markov	1
splicing	1
viterbi	1

Ayest's bioinformatic [67 articles] Export

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