CiteULike: BioNica's Eddy:SR [5 articles]

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	Pfam: A comprehensive database of protein domain families based on seed alignments [My Copy] Proteins: Structure, Function, and Genetics, Vol. 28, No. 3. (1997), pp. 405-420. by E. L. L. Sonnhammer, S. R. Eddy, R. Durbin posted to method hmm database bioinformatics by BioNica on 2009-09-19 19:41:20 as
	Biological Sequence Analysis : Probabilistic Models of Proteins and Nucleic Acids [My Copy] (April 1998) by R. Durbin, S. R. Eddy, A. Krogh, G. Mitchison posted to hmm by BioNica on 2009-07-19 17:07:12 as
	The Pfam protein families database. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D281-288. by Robert D. Finn, John Tate, Jaina Mistry, et al.Penny C. Coggill, Stephen John J. Sammut, Hans-Rudolf R. Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. Sonnhammer, Alex Bateman posted to database hmm protein by BioNica on 2009-03-22 13:37:12 as along with 13 people sjcockell badi MarcoAlvarez calderonv katholt urgi guhjy idoerg paszkows bicko niallhaslam gjuggler coela
	Probabilistic Phylogenetic Inference with Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172. by Elena Rivas, Sean R. Eddy posted to method phylogeny by BioNica on 2009-02-03 17:45:47 as along with 12 people and 1 group operon mhamada treangen pradiptaray zwang nuin timflutre druvus djkt aprasad gjuggler emptyhb iSEEM
	A probabilistic model of local sequence alignment that simplifies statistical significance estimation. [My Copy] PLoS computational biology, Vol. 4, No. 5. (30 May 2008), e1000069. by Sean R. Eddy posted to alignment hmm by BioNica on 2008-11-17 18:26:50 as along with 9 people cmzmasek druvus vwchan treangen saerni dakelley aramesh2 Ema gdb

method	88
alignment	67
chitinases	65
evolution	64
pathogenesis-related	63
model	38
selection	35
plant	34
phylogeny	30
pr04	30
pr12	30
pr03	29
database	25
defense	24
defensin	23
protein	23
pr08	20
antifungal	20
peroxidase	19
pr13	17
pr11	17
pr14	16
chitin-binding	16
pr02	16
pr17	15
duplication	15
pr09	15
glycoside_hydrolases	15
germin-like	14
expression	14
paml	13
resistance	13
programs	12
germin	12
homology	12
phylogenetic	12
structure	11
oxalate-oxidase	11
codon	11
thionin	10
polyploidy	10
hordeum	10
pr10	9
antimicrobial	9
hmm	9
triticum	9
pr06	8
pr05	8
hevein	8
proteins	8
pr16	7
phylogenetics	7
classics	7
pr15	7
pr01	7
plant-pathogen	6
maximum_likelihood	6
modeling	6
bioinformatics	6
plant-pathogenic	6
evaluation	6
family	6
positive	6
dna	5
powdery_mildew	5
wound-inducible	5
pr1	5
gene_code	5
darwinian	5
glucanases	5
allergens	5
evolutionary	5
sar	4
dca	4
pr5	4
solanum	4
adaptive	4
color	4
pr07	4
zea	4
analyses	4
pr	4
simulations	4
likelihood	3
gymnosperms	3
synergy	3
mutation	3
bootstrap	3
oxidative_burst	3
speciation	3
molecular_evolution	3
antibiotic	3
classification	3
disease	2
peptide	2
molecular	2
bayesian	2
discussion	2
ferrofluids	2
blast	2
tree-puzzle	2
bayes	2
infection	2
r-genes	2
signal_transduction	2
xylanase	2
ros	2
njplot	2
inhibitor	2
multigenic	2
phyml	2
darwin	2
hybrid	1
capsicum	1
msa	1
plant-insect	1
synonymous	1
nectarin	1
physiology	1
physcomitrella	1
genetic-mapping	1
prank	1
proteinase	1
leaf-gall	1
dnatagger	1
powdery-mildew	1
nbd-arc	1
metaphors	1
proteinase-inhibitor	1
nicotiana	1
neutral	1
pr18	1
induction	1
pollen	1
arabidopsis	1
aphid	1
malus	1
gene-fusion	1
systemic	1
upgma	1
neutrality	1
secretory	1
pepper	1
non-neutral	1
neurobiology	1
pathogenicity	1
tree-thinking	1
superoxide_dismutase	1
bacteria	1
induced	1
cross-linking	1
review	1
isr	1
cdna	1
metabolism	1
reconstruction	1
ecosystem	1
ecology	1
protein-coding	1
fungal	1
at2g37130	1
serine_protease	1
basic	1
at2g14610	1

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