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method	88
alignment	67
chitinases	65
evolution	64
pathogenesis-related	63
model	38
selection	35
plant	34
phylogeny	30
pr04	30
pr12	30
pr03	29
database	25
defense	24
defensin	23
protein	23
pr08	20
antifungal	20
peroxidase	19
pr13	17
pr11	17
pr14	16
chitin-binding	16
pr02	16
pr17	15
duplication	15
pr09	15
glycoside_hydrolases	15
germin-like	14
expression	14
paml	13
resistance	13
programs	12
germin	12
homology	12
phylogenetic	12
structure	11
oxalate-oxidase	11
codon	11
thionin	10
polyploidy	10
hordeum	10
pr10	9
antimicrobial	9
hmm	9
triticum	9
pr06	8
pr05	8
hevein	8
proteins	8
pr16	7
phylogenetics	7
classics	7
pr15	7
pr01	7
plant-pathogen	6
maximum_likelihood	6
modeling	6
bioinformatics	6
plant-pathogenic	6
evaluation	6
family	6
positive	6
dna	5
powdery_mildew	5
wound-inducible	5
pr1	5
gene_code	5
darwinian	5
glucanases	5
allergens	5
evolutionary	5
sar	4
dca	4
pr5	4
solanum	4
adaptive	4
color	4
pr07	4
zea	4
analyses	4
pr	4
simulations	4
likelihood	3
gymnosperms	3
synergy	3
mutation	3
bootstrap	3
oxidative_burst	3
speciation	3
molecular_evolution	3
antibiotic	3
classification	3
disease	2
peptide	2
molecular	2
bayesian	2
discussion	2
ferrofluids	2
blast	2
tree-puzzle	2
bayes	2
infection	2
r-genes	2
signal_transduction	2
xylanase	2
ros	2
njplot	2
inhibitor	2
multigenic	2
phyml	2
darwin	2
hybrid	1
capsicum	1
msa	1
plant-insect	1
synonymous	1
nectarin	1
physiology	1
physcomitrella	1
genetic-mapping	1
prank	1
proteinase	1
leaf-gall	1
dnatagger	1
powdery-mildew	1
nbd-arc	1
metaphors	1
proteinase-inhibitor	1
nicotiana	1
neutral	1
pr18	1
induction	1
pollen	1
arabidopsis	1
aphid	1
malus	1
gene-fusion	1
systemic	1
upgma	1
neutrality	1
secretory	1
pepper	1
non-neutral	1
neurobiology	1
pathogenicity	1
tree-thinking	1
superoxide_dismutase	1
bacteria	1
induced	1
cross-linking	1
review	1
isr	1
cdna	1
metabolism	1
reconstruction	1
ecosystem	1
ecology	1
protein-coding	1
fungal	1
at2g37130	1
serine_protease	1
basic	1
at2g14610	1

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