CiteULike: BioNica's Plotkin:JB [4 articles]

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	Codon Usage and Selection on Proteins [My Copy] Journal of Molecular Evolution, Vol. V63, No. 5. (14 November 2006), pp. 635-653. by Joshua B. Plotkin, Jonathan Dushoff, Michael M. Desai, Hunter B. Fraser posted to codon selection by BioNica on 2008-09-20 19:19:19 as along with 3 people gpalidwor friendpine bpcusack
	Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum [My Copy] Nature, Vol. 428, No. 6986. (29 April 2004), pp. 942-945. by Joshua B. Plotkin, Jonathan Dushoff, Hunter B. Fraser posted to selection by BioNica on 2006-10-11 17:01:45 as along with 1 person friendpine
	Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus [My Copy] PNAS, Vol. 100, No. 12. (10 June 2003), pp. 7152-7157. by Joshua B. Plotkin, Jonathan Dushoff posted to gene_code by BioNica on 2006-10-11 16:13:27 as along with 1 person friendpine
	Estimating Selection Pressures from Limited Comparative Data. [My Copy] Mol Biol Evol (5 June 2006) by Joshua B. B. Plotkin, Jonathan Dushoff, Michael M. M. Desai, Hunter B. B. Fraser posted to selection by BioNica on 2006-09-29 14:22:54 as along with 4 people and 1 group bnchakraborty dpollard djkt friendpine EisenLab

method	88
alignment	67
evolution	66
chitinases	65
pathogenesis-related	63
model	39
selection	35
plant	34
pr04	30
phylogeny	30
pr12	30
pr03	29
database	25
defense	24
defensin	23
protein	23
pr08	20
antifungal	20
peroxidase	19
pr13	17
pr11	17
pr14	16
pr02	16
chitin-binding	16
pr09	15
duplication	15
pr17	15
glycoside_hydrolases	15
germin-like	14
expression	14
resistance	14
paml	13
homology	12
germin	12
phylogenetic	12
programs	12
oxalate-oxidase	11
structure	11
codon	11
polyploidy	10
hordeum	10
thionin	10
pr10	9
hmm	9
triticum	9
antimicrobial	9
proteins	8
hevein	8
pr06	8
pr05	8
pr01	7
family	7
classics	7
pr16	7
pr15	7
phylogenetics	7
plant-pathogenic	6
bioinformatics	6
modeling	6
positive	6
plant-pathogen	6
maximum_likelihood	6
evaluation	6
evolutionary	5
wound-inducible	5
gene_code	5
allergens	5
dna	5
darwinian	5
powdery_mildew	5
pr1	5
glucanases	5
analyses	4
color	4
molecular_evolution	4
dca	4
solanum	4
pr	4
pr5	4
pr07	4
simulations	4
adaptive	4
zea	4
sar	4
disease	3
mutation	3
classification	3
bootstrap	3
gymnosperms	3
speciation	3
likelihood	3
synergy	3
multigenic	3
oxidative_burst	3
antibiotic	3
blast	2
ferrofluids	2
njplot	2
phyml	2
xylanase	2
discussion	2
r-genes	2
bayes	2
bayesian	2
tree-puzzle	2
signal_transduction	2
molecular	2
darwin	2
infection	2
inhibitor	2
peptide	2
ros	2
induction	1
aphid	1
malus	1
leaf-gall	1
nbd-arc	1
systemic	1
upgma	1
pepper	1
non-neutral	1
pollen	1
neurobiology	1
gene-fusion	1
tree-thinking	1
neutrality	1
secretory	1
arabidopsis	1
bacteria	1
pathogenicity	1
cross-linking	1
superoxide_dismutase	1
review	1
induced	1
cdna	1
metabolism	1
isr	1
ecosystem	1
protein-coding	1
physcomitrella	1
genetic-mapping	1
ecology	1
fungal	1
proteinase	1
dnatagger	1
powdery-mildew	1
prank	1
reconstruction	1
metaphors	1
proteinase-inhibitor	1
physiology	1
nicotiana	1
plant-insect	1
msa	1
at2g14610	1
basic	1
serine_protease	1
hybrid	1
capsicum	1
at2g37130	1
neutral	1
synonymous	1
nectarin	1
pr18	1

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