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	Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea [My Copy] Journal of Molecular Evolution, Vol. 29, No. 2. (1 August 1989), pp. 170-179. by H. Kishino, M. Hasegawa posted to model method maximum_likelihood by BioNica on 2009-11-12 18:48:09 as
	Information theory and an extension of the maximum likelihood principle [My Copy] In Proceedings of 2nd International Symposium on Information Theory (1973), pp. 267-281. by H. Aikake edited by B. N. Petrov, F. Csaki posted to model method maximum_likelihood classics by BioNica on 2009-11-06 19:11:43 as
	Estimating the Dimension of a Model [My Copy] The Annals of Statistics, Vol. 6, No. 2. (March 1978), pp. 461-464. by G. Schwarz posted to model method maximum_likelihood bayes by BioNica on 2009-11-06 19:01:42 as along with 2 people and 1 group ltitodem sobolevnrm baker-group
	Further analysts of the data by akaike' s information criterion and the finite corrections [My Copy] Communications in Statistics - Theory and Methods, Vol. 7, No. 1. (1978), pp. 13-26. by N. Sugiura posted to model method maximum_likelihood classics by BioNica on 2009-11-06 18:56:10 as along with 1 person fabiobayer
	Model Selection and Multi-model Inference: A Practical Information-Theoretic Approach [My Copy] (2002) by K. P. Burnham, D. R. Anderson posted to model by BioNica on 2009-10-01 20:15:04 as
	jModelTest: Phylogenetic Model Averaging [My Copy] Mol Biol Evol, Vol. 25, No. 7. (1 July 2008), pp. 1253-1256. by D. Posada posted to model method dna by BioNica on 2009-09-30 22:19:50 as along with 4 people Garamonfok operon druvus aprasad
	Phylogenetic model evaluation. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 452 (2008), pp. 331-364. by Lars Sommer S. Jermiin, Vivek Jayaswal, Faisal Ababneh, John Robinson posted to phylogenetic model method by BioNica on 2009-09-30 19:32:03 as
	Models of Molecular Evolution and Phylogeny [My Copy] Genome Research, Vol. 8, No. 12. (1 December 1998), pp. 1233-1244. by Pietro LiÃ², Nick Goldman posted to molecular model evolution dna by BioNica on 2009-09-30 19:31:12 as along with 5 people seb1 operon gjuggler hdopazo timflutre
	Different versions of the Dayhoff rate matrix. [My Copy] Molecular biology and evolution, Vol. 22, No. 2. (February 2005), pp. 193-199. by C. Kosiol, N. Goldman posted to protein model by BioNica on 2009-09-30 19:10:47 as along with 2 people bpb Haggan
	Amino acid substitution matrices from protein blocks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 22. (15 November 1992), pp. 10915-10919. by S. Henikoff, J. G. Henikoff posted to protein model by BioNica on 2009-09-30 17:43:20 as along with 14 people rshe rpetrenko maria_hauser cmura alefox j3xucite sebk cen4ik kaarsinogen dgront gurkanbebek Iden-J_GluR cjeans ashwinma
	An improved general amino acid replacement matrix. [My Copy] Molecular biology and evolution, Vol. 25, No. 7. (1 July 2008), pp. 1307-1320. by S. Q. Le, O. Gascuel posted to protein model by BioNica on 2009-09-30 17:33:24 as along with 5 people and 1 group lizbiogen druvus stajich friendpine dmp Mycology
	Modeling amino acid replacement. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 7, No. 6. (2000), pp. 761-776. by T. Müller, M. Vingron posted to protein model by BioNica on 2009-09-30 17:31:36 as
	A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. [My Copy] Molecular biology and evolution, Vol. 18, No. 5. (1 May 2001), pp. 691-699. by S. Whelan, N. Goldman posted to protein model by BioNica on 2009-09-30 17:29:48 as along with 7 people calderonv michaelbarton bpb chrn ssgong gjuggler gisle
	The rapid generation of mutation data matrices from protein sequences. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 8, No. 3. (June 1992), pp. 275-282. by D. T. Jones, W. R. Taylor, J. M. Thornton posted to protein model by BioNica on 2009-09-30 17:22:13 as along with 2 people ssgong skumagai
	A model of evolutionary change in proteins [My Copy] In Atlas of Protein Sequence and Structure (1978), pp. 345-352. by M. O. Dayhoff, R. M. Schwartz, B. C. Orcutt edited by M. O. Dayhoff posted to protein model evolution by BioNica on 2009-09-30 17:20:18 as
	ProtTest: selection of best-fit models of protein evolution [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2104-2105. by F. Abascal, R. Zardoya, D. Posada posted to protein programs model method bioinformatics by BioNica on 2009-09-22 19:13:41 as along with 5 people and 1 group druvus lizbiogen cmzmasek akifumi penka Nie
	Phylogenetic analysis. Models and estimation procedures. [My Copy] American journal of human genetics, Vol. 19, No. 3 Pt 1. (May 1967), pp. 233-257. by L. L. Cavalli-Sforza, A. W. Edwards posted to phylogenetic model classics by BioNica on 2009-09-07 21:24:33 as along with 1 person druvus
	Investigating Protein-Coding Sequence Evolution with Probabilistic Codon Substitution Models [My Copy] Mol Biol Evol, Vol. 26, No. 2. (1 February 2009), pp. 255-271. by M. Anisimova, C. Kosiol posted to model method codon by BioNica on 2009-08-26 23:03:31 as along with 3 people chica djkt gjuggler
	Computational Methods for Evaluating Phylogenetic Models of Coding Sequence Evolution with Dependence between Codons [My Copy] Mol Biol Evol, Vol. 26, No. 7. (1 July 2009), pp. 1663-1676. by N. Rodrigue, C. L. Kleinman, H. Philippe, N. Lartillot posted to model method codon by BioNica on 2009-08-26 22:12:02 as along with 1 person operon
	Models of coding sequence evolution. [My Copy] Briefings in bioinformatics, Vol. 10, No. 1. (1 January 2009), pp. 97-109. by W. Delport, K. Scheffler, C. Seoighe posted to model method codon by BioNica on 2009-08-26 22:08:55 as along with 10 people operon katholt chica dakelley nuin medic0747 michaelbarton treangen druvus nklee
	Site-to-Site Variation of Synonymous Substitution Rates [My Copy] Molecular Biology and Evolution, Vol. 22, No. 12. (December 2005), pp. 2375-2385. by S. L. K. Pond, S. V. Muse posted to evolutionary model by BioNica on 2009-05-25 05:17:07 as along with 4 people and 1 group druvus stevanspringer operon tale FAB-lab
	Evolutionary rate at the molecular level. [My Copy] Nature, Vol. 217, No. 5129. (17 February 1968), pp. 624-626. by M. Kimura posted to classics evolution evolutionary method model phylogeny by BioNica on 2009-04-22 18:08:25 as along with 5 people vprieto renewang gjuggler timflutre elfar
	Profile hidden Markov models [My Copy] Bioinformatics, Vol. 14, No. 9. (1 October 1998), pp. 755-763. by S. Eddy posted to hmm method model by BioNica on 2009-04-02 03:41:21 as along with 14 people ldiambra farhat druvus albert_swart miguel chad_davis eweaver dgront rabio cjeans suizan nklee yoanjacquemin ca3295
	Model selection in ecology and evolution [My Copy] Trends in Ecology & Evolution, Vol. 19, No. 2. (February 2004), pp. 101-108. by J. B. Johnson, K. S. Omland posted to method model by BioNica on 2009-03-16 09:11:33 as along with 15 people and 3 groups beete mhasoba yonatanf guhjy mroutley jmeppley almostc e2holmes cmm scis0000001 ajw gareth jasonn hkreysa bpcusack Savage Lab, UCLA FAB-lab PsychStatsBanter
	Mutation-Selection Models of Codon Substitution and Their Use to Estimate Selective Strengths on Codon Usage. [My Copy] Mol Biol Evol (3 January 2008) by Z. Yang, R. Nielsen posted to codon model selection by BioNica on 2008-09-29 15:07:17 as along with 5 people and 1 group codonusage operon stajich cjeans gjuggler Mycology
	MOLECULAR SIGNATURES OF NATURAL SELECTION [My Copy] Annual Review of Genetics, Vol. 39, No. 1. (2005), pp. 197-218. by Rasmus Nielsen posted to model selection by BioNica on 2008-05-27 19:00:52 as along with 12 people ckenaley dalexander diamantis ilyashl renewang operon bpb pradiptaray eckart_bindewald timflutre dmc jasonflannick
	The probability of duplicate gene preservation by subfunctionalization. [My Copy] Genetics, Vol. 154, No. 1. (1 January 2000), pp. 459-473. by M. Lynch, A. Force posted to duplication evolutionary model by BioNica on 2008-05-26 19:15:25 as along with 3 people and 1 group operon bluto Stew EisenLab
	Preservation of duplicate genes by complementary, degenerative mutations. [My Copy] Genetics, Vol. 151, No. 4. (1 April 1999), pp. 1531-1545. by A. Force, M. Lynch, F. B. Pickett, A. Amores, Y. L. Yan, J. Postlethwait posted to duplication evolutionary model by BioNica on 2008-05-26 19:04:32 as along with 4 people operon gurkanbebek RamuAnandakrishnan skumagai
	The probability of preservation of a newly arisen gene duplicate. [My Copy] Genetics, Vol. 159, No. 4. (December 2001), pp. 1789-1804. by M. Lynch, M. O'Hely, B. Walsh, A. Force posted to duplication evolution model by BioNica on 2008-05-26 18:39:00 as along with 2 people operon bluto
	Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences [My Copy] Mol Biol Evol, Vol. 23, No. 1. (1 January 2006), pp. 7-9. by B. Shapiro, A. Rambaut, A. J. Drummond posted to codon model by BioNica on 2008-02-05 18:43:38 as along with 3 people and 1 group akifumi spavey ArtemPankin FAB-lab
	Bayesian inference of character evolution [My Copy] Trends in Ecology & Evolution, Vol. 19, No. 9. (September 2004), pp. 475-481. by F. Ronquist posted to evolution model by BioNica on 2007-10-12 19:12:55 as along with 3 people codonusage sunye Cairne
	Mapping Sites of Positive Selection and Amino Acid Diversification in the HIV Genome: An Alternative Approach to Vaccine Design? [My Copy] Genetics, Vol. 167, No. 3. (1 July 2004), pp. 1047-1058. by Tulio de Oliveira, Marco Salemi, Michelle Gordon, et al.Anne-Mieke Vandamme, Estrelita J. van Rensburg, Susan Engelbrecht, Hoosen M. Coovadia, Sharon Cassol posted to codon evolution model positive selection by BioNica on 2007-10-12 15:52:19 as along with 2 people MRCBIRD Natasha
	Molecular phylogenetics: state-of-the-art methods for looking into the past [My Copy] Trends in Genetics, Vol. 17, No. 5. (1 May 2001), pp. 262-272. by S. Whelan, P. Lio, N. Goldman posted to phylogenetic molecular model dna by BioNica on 2007-07-19 21:45:00 as along with 3 people druvus dayjm timflutre
	A Bayesian Model Comparison Approach to Inferring Positive Selection [My Copy] Mol Biol Evol, Vol. 22, No. 12. (1 December 2005), pp. 2531-2540. by K. Scheffler, C. Seoighe posted to bayesian model positive selection by BioNica on 2007-07-19 21:11:46 as along with 3 people and 1 group MRCBIRD stevanspringer operon FAB-lab
	An Empirical Codon Model for Protein Sequence Evolution [My Copy] Mol Biol Evol, Vol. 24, No. 7. (1 July 2007), pp. 1464-1479. by C. Kosiol, I. Holmes, N. Goldman posted to codon model by BioNica on 2007-07-17 23:39:32 as along with 3 people aprasad cjeans gjuggler
	Testing Substitution Models Within a Phylogenetic Tree [My Copy] Mol Biol Evol, Vol. 20, No. 4. (1 April 2003), pp. 572-578. by G. Weiss, A. von Haeseler posted to method model tree-puzzle by BioNica on 2006-12-14 10:19:43 as

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method	85
alignment	67
evolution	64
pathogenesis-related	63
chitinases	61
model	36
plant	34
selection	34
phylogeny	30
pr04	30
pr12	30
database	25
pr03	25
defensin	23
protein	23
defense	22
antifungal	20
peroxidase	19
pr08	19
pr11	17
pr13	17
pr02	16
pr14	16
chitin-binding	15
duplication	15
pr09	15
pr17	15
expression	14
germin-like	14
glycoside_hydrolases	14
resistance	13
germin	12
paml	12
phylogenetic	12
programs	12
codon	11
homology	11
oxalate-oxidase	11
structure	11
hordeum	10
polyploidy	10
thionin	10
antimicrobial	9
hmm	9
pr10	9
triticum	9
pr05	8
pr06	8
proteins	8
classics	7
hevein	7
phylogenetics	7
pr01	7
pr15	7
pr16	7
bioinformatics	6
evaluation	6
family	6
maximum_likelihood	6
modeling	6
plant-pathogen	6
plant-pathogenic	6
allergens	5
darwinian	5
dna	5
evolutionary	5
gene_code	5
glucanases	5
positive	5
powdery_mildew	5
pr1	5
wound-inducible	5
adaptive	4
analyses	4
color	4
dca	4
pr	4
pr07	4
pr5	4
sar	4
simulations	4
solanum	4
zea	4
antibiotic	3
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gymnosperms	3
likelihood	3
molecular_evolution	3
mutation	3
oxidative_burst	3
speciation	3
synergy	3
bayes	2
bayesian	2
blast	2
bootstrap	2
darwin	2
discussion	2
disease	2
ferrofluids	2
infection	2
inhibitor	2
molecular	2
multigenic	2
njplot	2
peptide	2
phyml	2
r-genes	2
ros	2
signal_transduction	2
tree-puzzle	2
aphid	1
arabidopsis	1
at2g14610	1
at2g37130	1
bacteria	1
basic	1
capsicum	1
cdna	1
cross-linking	1
dnatagger	1
ecology	1
ecosystem	1
fungal	1
gene-fusion	1
genetic-mapping	1
hybrid	1
induced	1
induction	1
isr	1
leaf-gall	1
malus	1
metabolism	1
metaphors	1
msa	1
nbd-arc	1
nectarin	1
neurobiology	1
neutral	1
neutrality	1
nicotiana	1
non-neutral	1
pathogenicity	1
pepper	1
physcomitrella	1
physiology	1
plant-insect	1
pollen	1
powdery-mildew	1
pr18	1
prank	1
proteinase	1
proteinase-inhibitor	1
protein-coding	1
reconstruction	1
review	1
secretory	1
serine_protease	1
superoxide_dismutase	1
synonymous	1
systemic	1
tree-thinking	1
upgma	1
xylanase	1

BioNica's model [36 articles] Export

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