BioNica's phylogeny [30 articles] Export

Recent papers added to BioNica's library classified by the tag phylogeny. You can also see everyone's phylogeny.

	Phylogeny.fr: robust phylogenetic analysis for the non-specialist [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_2. (1 July 2008), pp. W465-469. by A. Dereeper, V. Guignon, G. Blanc, et al.S. Audic, S. Buffet, F. Chevenet, J. F. Dufayard, S. Guindon, V. Lefort, M. Lescot, J. M. Claverie, O. Gascuel posted to phyml phylogeny phylogenetic method bioinformatics analyses by BioNica on 2009-10-05 02:33:10 as along with 7 people biovils Eduvernois nlapalu treangen operon druvus sanchezbuelna
	BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data [My Copy] Mol Biol Evol, Vol. 14, No. 7. (1 July 1997), pp. 685-695. by O. Gascuel posted to phylogeny method by BioNica on 2009-09-30 22:59:01 as along with 6 people vingron lizbiogen timflutre swp09 Haggan matsen
	MRBAYES: Bayesian inference of phylogenetic trees [My Copy] Bioinformatics, Vol. 17, No. 8. (1 August 2001), pp. 754-755. by John P. Huelsenbeck, Fredrik Ronquist posted to phylogeny phylogenetics phylogenetic method by BioNica on 2009-09-28 19:34:21 as along with 9 people and 1 group ckenaley lmichan druvus treangen bpb rvosa spavey AaronDarling CharlesM FAB-lab
	Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology [My Copy] Systematic Zoology, Vol. 20, No. 4. (1971), pp. 406-416. by W. M. Fitch posted to phylogeny method classics by BioNica on 2009-09-27 20:33:25 as along with 1 person nklee
	A statistical method for evaluating systematic relationships [My Copy] University of Kansas Scientific Bulletin, Vol. 28 (1958), pp. 1409-1438. by R. R. Sokal, C. D. Michener posted to upgma phylogeny method by BioNica on 2009-09-27 19:21:19 as
	Dendroscope: An interactive viewer for large phylogenetic trees [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (22 November 2007), 460. by D. Huson, R. Richter, C. Rausch, T. Dezulian, M. Franz, R. Rupp posted to programs phylogeny njplot by BioNica on 2009-08-18 20:45:24 as along with 2 people laughcry gjuggler
	WWW-query: An on-line retrieval system for biological sequence banks [My Copy] Biochimie, Vol. 78, No. 5. (1996), pp. 364-369. by G. Perrière, M. Gouy posted to programs phylogeny njplot by BioNica on 2009-08-18 20:24:27 as
	Reconstructing immune phylogeny: new perspectives. [My Copy] Nature reviews. Immunology, Vol. 5, No. 11. (November 2005), pp. 866-879. by G. W. Litman, J. P. Cannon, L. J. Dishaw posted to defense phylogeny by BioNica on 2009-06-14 18:28:07 as along with 1 person tomhebbron
	HyPhy: hypothesis testing using phylogenies [My Copy] Bioinformatics, Vol. 21, No. 5. (01 March 2005), pp. 676-679. by S. L. K. Pond, S. D. W. Frost, S. V. Muse posted to method phylogeny by BioNica on 2009-05-25 05:12:00 as along with 5 people druvus operon radek Natasha Garamonfok
	PHYLIP (Phylogeny Inference Package) version 3.6 [My Copy] (2005) by J. Felsenstein posted to method phylogeny by BioNica on 2009-05-25 05:04:32 as
	Evolutionary trees from DNA sequences: a maximum likelihood approach. [My Copy] Journal of molecular evolution, Vol. 17, No. 6. (1981), pp. 368-376. by J. Felsenstein posted to maximum_likelihood phylogeny by BioNica on 2009-05-25 04:56:05 as along with 10 people and 1 group gjuggler alexeid bpb chrn kaspermunch dquest djkt timflutre dmc elfar Bioinformatics
	Evolutionary rate at the molecular level. [My Copy] Nature, Vol. 217, No. 5129. (17 February 1968), pp. 624-626. by M. Kimura posted to classics evolution evolutionary method model phylogeny by BioNica on 2009-04-22 18:08:25 as along with 5 people vprieto renewang gjuggler timflutre elfar
	Construction of phylogenetic trees. [My Copy] Science, Vol. 155, No. 760. (20 January 1967), pp. 279-284. by W. M. Fitch, E. Margoliash posted to classics method phylogeny by BioNica on 2009-04-22 18:07:23 as along with 2 people timflutre treangen
	CTree: comparison of clusters between phylogenetic trees made easy [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2952-2953. by John Archer, David L. Robertson posted to method phylogeny by BioNica on 2009-04-08 02:12:57 as along with 1 person ryanraaum
	Maximum-likelihood analysis using TREE-PUZZLE. [My Copy] Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 6 (March 2007) by H. A. Schmidt, A. von Haeseler posted to method phylogenetic phylogenetics phylogeny programs by BioNica on 2009-03-15 02:09:18 as
	IQPNNI: moving fast through tree space and stopping in time. [My Copy] Molecular biology and evolution, Vol. 21, No. 8. (1 August 2004), pp. 1565-1571. by L. S. Vinh, A. von Haeseler posted to method phylogenetic phylogenetics phylogeny programs by BioNica on 2009-03-15 01:50:55 as
	A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. [My Copy] Systematic biology, Vol. 52, No. 5. (October 2003), pp. 696-704. by S. Guindon, O. Gascuel posted to method phylogenetic phylogenetics phylogeny phyml programs by BioNica on 2009-03-15 01:32:30 as along with 13 people and 1 group chica calderonv swp09 oceanwind druvus bpb chrn aprasad lyongu treangen Haggan cdallett Auger Dead 60's
	TOPD/FMTS: a new software to compare phylogenetic trees [My Copy] Bioinformatics, Vol. 23, No. 12. (25 April 2007), pp. btm135-1558. by Pere Puigbo, Santiago Garcia-Vallve, James O. McInerney posted to method phylogeny by BioNica on 2009-03-06 13:57:28 as along with 6 people gjuggler vallve sharpton druvus dparks tny
	Probabilistic Phylogenetic Inference with Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172. by Elena Rivas, Sean R. Eddy posted to method phylogeny by BioNica on 2009-02-03 17:45:47 as along with 11 people and 1 group mhamada treangen pradiptaray zwang nuin timflutre druvus djkt aprasad gjuggler emptyhb iSEEM
	Phylogenetic distribution, functional epitopes and evolution of the CSalphabeta superfamily. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 62, No. 19-20. (October 2005), pp. 2257-2269. by S. Zhu, B. Gao, J. Tytgat posted to defensin phylogeny pr12 by BioNica on 2009-01-28 12:46:09 as
	The plant tree of life: an overview and some points of view [My Copy] Am. J. Bot., Vol. 91, No. 10. (1 October 2004), pp. 1437-1445. by J. D. Palmer, D. E. Soltis, M. W. Chase posted to gymnosperms phylogeny plant by BioNica on 2008-12-12 13:57:37 as along with 1 person and 1 group cmm FAB-lab
	Tobacco Nectarin I. PURIFICATION AND CHARACTERIZATION AS A GERMIN-LIKE, MANGANESE SUPEROXIDE DISMUTASE IMPLICATED IN THE DEFENSE OF FLORAL REPRODUCTIVE TISSUES [My Copy] J. Biol. Chem., Vol. 275, No. 47. (17 November 2000), pp. 36726-36733. by Clay Carter, Robert W. Thornburg posted to germin-like nectarin oxalate-oxidase phylogeny by BioNica on 2008-12-08 16:07:32 as
	Germin-like protein gene family of a moss, Physcomitrella patens, phylogenetically falls into two characteristic new clades [My Copy] Plant Molecular Biology, Vol. 56, No. 3. (25 October 2004), pp. 381-395. by Masaru Nakata, Yayoi Watanabe, Yoko Sakurai, et al.Yuka Hashimoto, Masahiro Matsuzaki, Yohsuke Takahashi, Toshio Satoh posted to germin-like phylogeny physcomitrella by BioNica on 2008-12-04 13:37:08 as
	Phylogeny, Function, and Evolution of the Cupins, a Structurally Conserved, Functionally Diverse Superfamily of Proteins [My Copy] Mol Biol Evol, Vol. 18, No. 4. (1 April 2001), pp. 593-605. by Sawsan Khuri, Freek T. Bakker, Jim M. Dunwell posted to evolution germin-like phylogeny by BioNica on 2008-12-02 18:52:56 as
	Speciation and Species Separation in <i>Hordeum</i> L. (Poaceae) Resolved by Discontinuous Molecular Markers<sup>1</sup> [My Copy] Plant Biology, Vol. 4, No. 5. (2002), pp. 567-575. by H. A. El-Rabey, A. Badr, R. Schäfer-Pregl, W. Martin, F. Salamini posted to hordeum phylogeny by BioNica on 2008-11-24 18:22:21 as
	Phyletic relationships within the genus Hordeum using PCR-based markers [My Copy] Genetic Resources and Crop Evolution, Vol. 48, No. 5. (1 October 2001), pp. 447-458. by Valeria Terzi, Nicola Pecchioni, Primetta Faccioli, Ladislav Kučera, Antonio M. Stanca posted to hordeum phylogeny by BioNica on 2008-11-24 18:18:41 as
	The peroxidase gene family in plants: a phylogenetic overview. [My Copy] Journal of molecular evolution, Vol. 57, No. 4. (October 2003), pp. 397-407. by L. Duroux, K. G. Welinder posted to peroxidase phylogeny pr09 by BioNica on 2008-04-24 14:42:25 as
	Biology Recapitulates Phylogeny [My Copy] Science, Vol. 276, No. 5310. (11 April 1997), pp. 218-219. by David M. Hillis posted to evolution phylogeny plant-pathogenic by BioNica on 2008-02-05 14:11:13 as
	A step by step guide to phylogeny reconstruction [My Copy] The Plant Journal, Vol. 45, No. 4. (February 2006), pp. 561-572. by Jill, Jane A. Langdale posted to method phylogeny by BioNica on 2007-09-09 13:47:45 as along with 2 people and 1 group scryrps ArtemPankin LabDros
	The neighbor-joining method: a new method for reconstructing phylogenetic trees. [My Copy] Molecular biology and evolution, Vol. 4, No. 4. (1 July 1987), pp. 406-425. by N. Saitou, M. Nei posted to reconstruction phylogeny method by BioNica on 2007-01-17 11:41:35 as along with 17 people and 1 group vtraag qiang parnell esyoun forest2087 aprasad mount_misery cawelsh9 cen4ik sandra_yu greger_halltorp taka gelack usagi-kirin ArtemPankin bandrewfox Auger Dead 60's

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method	85
alignment	67
evolution	64
pathogenesis-related	63
chitinases	61
model	36
plant	34
selection	34
phylogeny	30
pr04	30
pr12	30
database	25
pr03	25
defensin	23
protein	23
defense	22
antifungal	20
peroxidase	19
pr08	19
pr11	17
pr13	17
pr02	16
pr14	16
chitin-binding	15
duplication	15
pr09	15
pr17	15
expression	14
germin-like	14
glycoside_hydrolases	14
resistance	13
germin	12
paml	12
phylogenetic	12
programs	12
codon	11
homology	11
oxalate-oxidase	11
structure	11
hordeum	10
polyploidy	10
thionin	10
antimicrobial	9
hmm	9
pr10	9
triticum	9
pr05	8
pr06	8
proteins	8
classics	7
hevein	7
phylogenetics	7
pr01	7
pr15	7
pr16	7
bioinformatics	6
evaluation	6
family	6
maximum_likelihood	6
modeling	6
plant-pathogen	6
plant-pathogenic	6
allergens	5
darwinian	5
dna	5
evolutionary	5
gene_code	5
glucanases	5
positive	5
powdery_mildew	5
pr1	5
wound-inducible	5
adaptive	4
analyses	4
color	4
dca	4
pr	4
pr07	4
pr5	4
sar	4
simulations	4
solanum	4
zea	4
antibiotic	3
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gymnosperms	3
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molecular_evolution	3
mutation	3
oxidative_burst	3
speciation	3
synergy	3
bayes	2
bayesian	2
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darwin	2
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ferrofluids	2
infection	2
inhibitor	2
molecular	2
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njplot	2
peptide	2
phyml	2
r-genes	2
ros	2
signal_transduction	2
tree-puzzle	2
aphid	1
arabidopsis	1
at2g14610	1
at2g37130	1
bacteria	1
basic	1
capsicum	1
cdna	1
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dnatagger	1
ecology	1
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fungal	1
gene-fusion	1
genetic-mapping	1
hybrid	1
induced	1
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isr	1
leaf-gall	1
malus	1
metabolism	1
metaphors	1
msa	1
nbd-arc	1
nectarin	1
neurobiology	1
neutral	1
neutrality	1
nicotiana	1
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pathogenicity	1
pepper	1
physcomitrella	1
physiology	1
plant-insect	1
pollen	1
powdery-mildew	1
pr18	1
prank	1
proteinase	1
proteinase-inhibitor	1
protein-coding	1
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review	1
secretory	1
serine_protease	1
superoxide_dismutase	1
synonymous	1
systemic	1
tree-thinking	1
upgma	1
xylanase	1

BioNica's phylogeny [30 articles] Export

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