BioNica's protein [23 articles] Export

Recent papers added to BioNica's library classified by the tag protein. You can also see everyone's protein.

	Different versions of the Dayhoff rate matrix. [My Copy] Molecular biology and evolution, Vol. 22, No. 2. (February 2005), pp. 193-199. by C. Kosiol, N. Goldman posted to protein model by BioNica on 2009-09-30 19:10:47 as along with 2 people bpb Haggan
	Amino acid substitution matrices from protein blocks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 22. (15 November 1992), pp. 10915-10919. by S. Henikoff, J. G. Henikoff posted to protein model by BioNica on 2009-09-30 17:43:20 as along with 14 people rshe rpetrenko maria_hauser cmura alefox j3xucite sebk cen4ik kaarsinogen dgront gurkanbebek Iden-J_GluR cjeans ashwinma
	An improved general amino acid replacement matrix. [My Copy] Molecular biology and evolution, Vol. 25, No. 7. (1 July 2008), pp. 1307-1320. by S. Q. Le, O. Gascuel posted to protein model by BioNica on 2009-09-30 17:33:24 as along with 5 people and 1 group lizbiogen druvus stajich friendpine dmp Mycology
	Modeling amino acid replacement. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 7, No. 6. (2000), pp. 761-776. by T. Müller, M. Vingron posted to protein model by BioNica on 2009-09-30 17:31:36 as
	A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. [My Copy] Molecular biology and evolution, Vol. 18, No. 5. (1 May 2001), pp. 691-699. by S. Whelan, N. Goldman posted to protein model by BioNica on 2009-09-30 17:29:48 as along with 7 people calderonv michaelbarton bpb chrn ssgong gjuggler gisle
	The rapid generation of mutation data matrices from protein sequences. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 8, No. 3. (June 1992), pp. 275-282. by D. T. Jones, W. R. Taylor, J. M. Thornton posted to protein model by BioNica on 2009-09-30 17:22:13 as along with 2 people ssgong skumagai
	A model of evolutionary change in proteins [My Copy] In Atlas of Protein Sequence and Structure (1978), pp. 345-352. by M. O. Dayhoff, R. M. Schwartz, B. C. Orcutt edited by M. O. Dayhoff posted to protein model evolution by BioNica on 2009-09-30 17:20:18 as
	ProtTest: selection of best-fit models of protein evolution [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2104-2105. by F. Abascal, R. Zardoya, D. Posada posted to protein programs model method bioinformatics by BioNica on 2009-09-22 19:13:41 as along with 5 people and 1 group druvus lizbiogen cmzmasek akifumi penka Nie
	Protein evolution [My Copy] (1999) by L. Patthy posted to evolution protein by BioNica on 2009-06-01 13:46:32 as
	PANTHER: a library of protein families and subfamilies indexed by function. [My Copy] Genome Res, Vol. 13, No. 9. (September 2003), pp. 2129-2141. by P. D. Thomas, M. J. Campbell, A. Kejariwal, et al.H. Mi, B. Karlak, R. Daverman, K. Diemer, A. Muruganujan, A. Narechania posted to database family hmm method protein by BioNica on 2009-04-06 18:23:19 as along with 2 people renewang skumagai
	The Pfam protein families database. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D281-288. by Robert D. Finn, John Tate, Jaina Mistry, et al.Penny C. Coggill, Stephen John J. Sammut, Hans-Rudolf R. Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. Sonnhammer, Alex Bateman posted to database hmm protein by BioNica on 2009-03-22 13:37:12 as along with 13 people sjcockell badi MarcoAlvarez calderonv katholt urgi guhjy idoerg paszkows bicko niallhaslam gjuggler coela
	InterPro: the integrative protein signature database. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (21 January 2009) by Sarah Hunter, Rolf Apweiler, Teresa K. Attwood, et al.Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Ujjwal Das, Louise Daugherty, Lauranne Duquenne, Robert D. Finn, Julian Gough, Daniel Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Nicola Mulder, Darren Natale, Christine Orengo, Antony F. Quinn, Jeremy D. Selengut, Christian J. Sigrist, Manjula Thimma, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats posted to database method protein by BioNica on 2009-03-22 13:29:40 as along with 4 people tomt21 lptolik nlapalu druvus
	PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by S. Moretti, F. Reinier, O. Poirot, et al.F. Armougom, S. Audic, V. Keduas, C. Notredame posted to alignment codon method programs protein by BioNica on 2009-03-15 02:25:53 as
	The Universal Protein Resource (UniProt) [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_1. (11 January 2008), pp. D190-195. by The-Uniprot-Consortium posted to database protein by BioNica on 2009-02-03 13:03:35 as along with 12 people lawraga saket diamantis semin thegoose allysonlister fbristow guhjy renatomilani kintoki jteyra janasont
	Secreted proteins of tobacco cultured BY2 cells: identification of a new member of pathogenesis-related proteins [My Copy] Plant Molecular Biology, Vol. 42, No. 3. (1 February 2000), pp. 479-488. by Y. Okushima, N. Koizumi, T. Kusano, H. Sano posted to basic pathogenesis-related pr17 protein secretory by BioNica on 2008-11-14 22:25:06 as
	The families of pathogenesis-related proteins, their activities, and comparative analysis of PR-1 type proteins [My Copy] Physiological and Molecular Plant Pathology, Vol. 55, No. 2. (August 1999), pp. 85-97. by L. C. Van Loon, E. A. Van Strien posted to pathogenesis-related protein by BioNica on 2008-07-22 02:28:30 as
	A simple method for displaying the hydropathic character of a protein [My Copy] Journal of Molecular Biology, Vol. 157, No. 1. (05 May 1982), pp. 105-132. by J. Kyte, R. Doolittle posted to color protein by BioNica on 2007-09-09 15:57:07 as along with 6 people jwm pjkiley nedwards carlescorbi twenta rph
	Thermodynamics of Neutral Protein Evolution [My Copy] Genetics, Vol. 175, No. 1. (1 January 2007), pp. 255-266. by J. D. Bloom, A. Raval, C. O. Wilke posted to protein evolution by BioNica on 2007-07-13 19:32:18 as along with 1 person zwang
	Protein stability promotes evolvability [My Copy] PNAS, Vol. 103, No. 15. (11 April 2006), pp. 5869-5874. by J. D. Bloom, S. T. Labthavikul, C. R. Otey, F. H. Arnold posted to evolution protein by BioNica on 2007-07-13 19:31:19 as along with 10 people and 2 groups rklancer Retchless lna Einat penka cmm redelings Cristiano wilbur cdeane structural_bioinformatics FAB-lab
	A First-Principles Model of Early Evolution: Emergence of Gene Families, Species, and Preferred Protein Folds [My Copy] PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e139. by K. B. Zeldovich, P. Chen, B. E. Shakhnovich, E. I. Shakhnovich posted to evolution protein by BioNica on 2007-07-13 19:28:31 as along with 6 people grahamc cjeans zwang Jporci farhat biinins
	Molecular modeling of pathogenesis-related proteins of family 5. [My Copy] Cell Biochem Biophys, Vol. 44, No. 3. (2006), pp. 385-394. by C. E. Thompson, C. L. Fernandes, O. N. de Souza, F. M. Salzano, S. L. Bonatto, L. B. Freitas posted to pathogenesis-related protein by BioNica on 2006-10-11 15:14:53 as
	Evolution of protein structural classes and protein sequence families. [My Copy] Proc Natl Acad Sci U S A (7 September 2006) by In-Geol G. Choi, Sung-Hou H. Kim posted to evolution protein by BioNica on 2006-10-02 13:39:50 as along with 5 people and 1 group phoenixzxl tjimenez brant tny youdon EisenLab
	An integrated view of protein evolution. [My Copy] Nature reviews. Genetics, Vol. 7, No. 5. (May 2006), pp. 337-348. by C. Pál, B. Papp, M. J. Lercher posted to evolution protein by BioNica on 2006-10-02 13:33:22 as along with 13 people and 2 groups mgomes chica michaelbarton gurprit_raunu gjuggler biomcgary icases dayjm tny entropy markbothwell mingzhi phoenixzxl Bothwellab TNT

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method	85
alignment	67
evolution	64
pathogenesis-related	63
chitinases	61
model	36
plant	34
selection	34
phylogeny	30
pr04	30
pr12	30
database	25
pr03	25
defensin	23
protein	23
defense	22
antifungal	20
peroxidase	19
pr08	19
pr11	17
pr13	17
pr02	16
pr14	16
chitin-binding	15
duplication	15
pr09	15
pr17	15
expression	14
germin-like	14
glycoside_hydrolases	14
resistance	13
germin	12
paml	12
phylogenetic	12
programs	12
codon	11
homology	11
oxalate-oxidase	11
structure	11
hordeum	10
polyploidy	10
thionin	10
antimicrobial	9
hmm	9
pr10	9
triticum	9
pr05	8
pr06	8
proteins	8
classics	7
hevein	7
phylogenetics	7
pr01	7
pr15	7
pr16	7
bioinformatics	6
evaluation	6
family	6
maximum_likelihood	6
modeling	6
plant-pathogen	6
plant-pathogenic	6
allergens	5
darwinian	5
dna	5
evolutionary	5
gene_code	5
glucanases	5
positive	5
powdery_mildew	5
pr1	5
wound-inducible	5
adaptive	4
analyses	4
color	4
dca	4
pr	4
pr07	4
pr5	4
sar	4
simulations	4
solanum	4
zea	4
antibiotic	3
classification	3
gymnosperms	3
likelihood	3
molecular_evolution	3
mutation	3
oxidative_burst	3
speciation	3
synergy	3
bayes	2
bayesian	2
blast	2
bootstrap	2
darwin	2
discussion	2
disease	2
ferrofluids	2
infection	2
inhibitor	2
molecular	2
multigenic	2
njplot	2
peptide	2
phyml	2
r-genes	2
ros	2
signal_transduction	2
tree-puzzle	2
aphid	1
arabidopsis	1
at2g14610	1
at2g37130	1
bacteria	1
basic	1
capsicum	1
cdna	1
cross-linking	1
dnatagger	1
ecology	1
ecosystem	1
fungal	1
gene-fusion	1
genetic-mapping	1
hybrid	1
induced	1
induction	1
isr	1
leaf-gall	1
malus	1
metabolism	1
metaphors	1
msa	1
nbd-arc	1
nectarin	1
neurobiology	1
neutral	1
neutrality	1
nicotiana	1
non-neutral	1
pathogenicity	1
pepper	1
physcomitrella	1
physiology	1
plant-insect	1
pollen	1
powdery-mildew	1
pr18	1
prank	1
proteinase	1
proteinase-inhibitor	1
protein-coding	1
reconstruction	1
review	1
secretory	1
serine_protease	1
superoxide_dismutase	1
synonymous	1
systemic	1
tree-thinking	1
upgma	1
xylanase	1

BioNica's protein [23 articles] Export

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