BioNica's selection [34 articles] Export

Recent papers added to BioNica's library classified by the tag selection. You can also see everyone's selection.

	Pyoverdine Receptor: a Case of Positive Darwinian Selection in Pseudomonas aeruginosa [My Copy] J. Bacteriol., Vol. 187, No. 10. (15 May 2005), pp. 3289-3292. by Burkhard Tummler, Pierre Cornelis posted to selection darwinian adaptive by BioNica on 2009-09-13 16:08:06 as
	Estimates of Positive Darwinian Selection Are Inflated by Errors in Sequencing, Annotation, and Alignment [My Copy] Genome Biol Evol, Vol. 1, No. 1. (22 June 2009), pp. 114-118. by A. Schneider, A. Souvorov, N. Sabath, G. Landan, G. H. Gonnet, D. Graur posted to selection discussion database darwinian by BioNica on 2009-08-14 17:33:03 as along with 4 people druvus natstreet aprasad gjuggler
	On the origin of species by means of natural selection, or the preservation of favoured races in the struggle for life. [My Copy] (1859) by C. R. Darwin posted to darwin evolution selection by BioNica on 2009-06-30 17:02:45 as
	Selection on Glycine beta-1,3-endoglucanase genes differentially inhibited by a Phytophthora glucanase inhibitor protein [My Copy] Genetics (15 February 2005), genetics.103.025098. by J. G. Bishop, D. R. Ripoll, S. Bashir, C. M. B. Damasceno, J. D. Seeds, J. K. C. Rose posted to pr02 selection by BioNica on 2009-06-15 22:01:39 as
	Adaptation to Different Human Populations by HIV-1 Revealed by Codon-Based Analyses [My Copy] PLoS Comput Biol, Vol. 2, No. 6. (23 June 2006), e62. by S. L. K. Pond, S. D. W. Frost, Z. Grossman, M. B. Gravenor, D. D. Richman, A. J. L. Brown posted to method selection by BioNica on 2009-03-22 15:21:14 as along with 1 person druvus
	A Genetic Algorithm Approach to Detecting Lineage-Specific Variation in Selection Pressure [My Copy] Molecular Biology and Evolution, Vol. 22, No. 3. (March 2005), pp. 478-485. by S. L. K. Pond, S. D. W. Frost posted to method selection by BioNica on 2009-02-17 13:59:12 as along with 2 people and 1 group druvus stevanspringer FAB-lab
	Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level [My Copy] Mol Biol Evol, Vol. 22, No. 12. (1 December 2005), pp. 2472-2479. by J. Zhang, R. Nielsen, Z. Yang posted to method molecular_evolution phylogenetic positive selection by BioNica on 2009-02-17 13:53:53 as along with 8 people and 1 group atphan clearbluespring stevanspringer AaronDarling usagi-kirin Garamonfok mingzhi CharlesM FAB-lab
	Diversifying and Purifying Selection in the Peptide Binding Region of DRB in Mammals [My Copy] Journal of Molecular Evolution, Vol. 66, No. 4. (6 April 2008), pp. 384-394. by R. Furlong, Z. Yang posted to selection by BioNica on 2008-09-29 15:08:54 as
	Mutation-Selection Models of Codon Substitution and Their Use to Estimate Selective Strengths on Codon Usage. [My Copy] Mol Biol Evol (3 January 2008) by Z. Yang, R. Nielsen posted to codon model selection by BioNica on 2008-09-29 15:07:17 as along with 5 people and 1 group codonusage operon stajich cjeans gjuggler Mycology
	Codon Usage and Selection on Proteins [My Copy] Journal of Molecular Evolution, Vol. V63, No. 5. (14 November 2006), pp. 635-653. by Joshua B. Plotkin, Jonathan Dushoff, Michael M. Desai, Hunter B. Fraser posted to codon selection by BioNica on 2008-09-20 19:19:19 as along with 3 people gpalidwor friendpine bpcusack
	MOLECULAR SIGNATURES OF NATURAL SELECTION [My Copy] Annual Review of Genetics, Vol. 39, No. 1. (2005), pp. 197-218. by Rasmus Nielsen posted to model selection by BioNica on 2008-05-27 19:00:52 as along with 12 people ckenaley dalexander diamantis ilyashl renewang operon bpb pradiptaray eckart_bindewald timflutre dmc jasonflannick
	Positive Darwinian selection after gene duplication in primate ribonuclease genes [My Copy] Proceedings of the National Academy of Sciences, Vol. 95, No. 7. (31 March 1998), pp. 3708-3713. by Jianzhi Zhang, Helene F. Rosenberg, Masatoshi Nei posted to darwinian positive selection by BioNica on 2008-05-19 19:03:04 as along with 2 people gjuggler atphan
	A Darwinian evolutionary system : I. Definition and basic properties [My Copy] Journal of Theoretical Biology, Vol. 39, No. 2. (May 1973), pp. 397-415. by Frank Papentin posted to darwinian evolution selection simulations by BioNica on 2007-10-13 15:58:37 as
	Mapping Sites of Positive Selection and Amino Acid Diversification in the HIV Genome: An Alternative Approach to Vaccine Design? [My Copy] Genetics, Vol. 167, No. 3. (1 July 2004), pp. 1047-1058. by Tulio de Oliveira, Marco Salemi, Michelle Gordon, et al.Anne-Mieke Vandamme, Estrelita J. van Rensburg, Susan Engelbrecht, Hoosen M. Coovadia, Sharon Cassol posted to codon evolution model positive selection by BioNica on 2007-10-12 15:52:19 as along with 2 people MRCBIRD Natasha
	A Bayesian Model Comparison Approach to Inferring Positive Selection [My Copy] Mol Biol Evol, Vol. 22, No. 12. (1 December 2005), pp. 2531-2540. by K. Scheffler, C. Seoighe posted to bayesian model positive selection by BioNica on 2007-07-19 21:11:46 as along with 3 people and 1 group MRCBIRD stevanspringer operon FAB-lab
	Being positive about selection. [My Copy] PLoS Biol, Vol. 4, No. 3. (March 2006) by C. MacCallum, E. Hill posted to selection by BioNica on 2006-12-11 13:33:38 as along with 5 people and 1 group stevanspringer operon balajis ejeffery JBEgwa01 FAB-lab
	The Comparative Method Rules! Codon Volatility Cannot Detect Positive Darwinian Selection Using a Single Genome Sequence [My Copy] Molecular Biology and Evolution, Vol. 22, No. 3. (March 2005), pp. 496-500. by Tal Dagan, Dan Graur posted to selection by BioNica on 2006-10-11 17:02:40 as
	Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum [My Copy] Nature, Vol. 428, No. 6986. (29 April 2004), pp. 942-945. by Joshua B. Plotkin, Jonathan Dushoff, Hunter B. Fraser posted to selection by BioNica on 2006-10-11 17:01:45 as along with 1 person friendpine
	Estimating Selection on Nonsynonymous Mutations [My Copy] Genetics, Vol. 172, No. 2. (1 February 2006), pp. 1079-1092. by Laurence Loewe, Brian Charlesworth, Carolina Bartolome, Veronique Noel posted to evolution selection by BioNica on 2006-10-11 16:25:25 as along with 2 people and 1 group operon stevanspringer FAB-lab
	On the Evolution of Codon Volatility [My Copy] Genetics, Vol. 169, No. 1. (1 January 2005), pp. 495-501. by Jianzhi Zhang posted to evolution gene_code selection by BioNica on 2006-10-11 16:10:05 as
	Evolution of unisexual flowers in grasses (Poaceae) and the putative sex-determination gene, TASSELSEED2 (TS2) [My Copy] New Phytologist, Vol. 170, No. 4. (June 2006), pp. 885-899. by Simon T. Malcomber, Elizabeth A. Kellogg posted to plant proteins selection by BioNica on 2006-09-29 15:15:37 as
	Estimating Selection Pressures from Limited Comparative Data. [My Copy] Mol Biol Evol (5 June 2006) by Joshua B. B. Plotkin, Jonathan Dushoff, Michael M. M. Desai, Hunter B. B. Fraser posted to selection by BioNica on 2006-09-29 14:22:54 as along with 4 people and 1 group bnchakraborty dpollard djkt friendpine EisenLab
	Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection [My Copy] Molecular Biology and Evolution, Vol. 22, No. 5. (15 May 2005), pp. 1208-1222. by S. L. K. Pond, S. D. W. Frost posted to selection by BioNica on 2006-09-29 14:18:16 as along with 5 people druvus operon Garamonfok marck gjuggler
	The power of phylogenetic comparison in revealing protein function. [My Copy] Proc Natl Acad Sci U S A (22 February 2005) by Z. Yang posted to paml selection by BioNica on 2006-09-29 12:46:12 as along with 6 people and 1 group gjuggler mdimmic stevanspringer bpb tale bpcusack FAB-lab
	REVCOM: a robust Bayesian method for evolutionary rate estimation [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2315-2321. by Andrew J. Bordner, Ruben Abagyan posted to selection by BioNica on 2006-09-29 12:45:01 as along with 1 person coldmeadow
	Point Mutations with Positive Selection Were a Major Force during the Evolution of a Receptor-Kinase Resistance Gene Family of Rice [My Copy] Plant Physiol., Vol. 140, No. 3. (1 March 2006), pp. 998-1008. by Xinli Sun, Yinglong Cao, Shiping Wang posted to plant selection by BioNica on 2006-09-29 12:40:10 as
	Control of the False Discovery Rate Applied to the Detection of Positively Selected Amino Acid Sites [My Copy] Molecular Biology and Evolution, Vol. 23, No. 5. (15 May 2006), pp. 919-926. by Stephane Guindon, Mik Black, Allen Rodrigo posted to selection by BioNica on 2006-09-29 12:38:50 as
	Datamonkey: rapid detection of selective pressure on individual sites of codon alignments [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2531-2533. by S. L. K. Pond, S. D. W. Frost posted to selection by BioNica on 2006-09-29 12:34:18 as along with 2 people and 1 group druvus rvosa FAB-lab
	Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. [My Copy] Genetics, Vol. 168, No. 2. (1 October 2004), pp. 1041-1051. by W. S. W. Wong, Z. Yang, N. Goldman, R. Nielsen posted to paml selection simulations by BioNica on 2006-09-29 12:30:28 as along with 6 people katholt renewang Natasha timflutre gjuggler CharlesM
	Statistical methods for detecting molecular adaptation [My Copy] Trends in Ecology & Evolution, Vol. 15, No. 12. (1 December 2000), pp. 496-503. by Z. Yang, J. P. Bielawski posted to paml selection by BioNica on 2006-09-29 12:30:11 as
	Alternative mutations of a positively selected residue elicit gain or loss of functionalities in enzyme evolution [My Copy] PNAS, Vol. 103, No. 13. (28 March 2006), pp. 4876-4881. by Malena A. Norrgard, Ylva Ivarsson, Kaspars Tars, Bengt Mannervik posted to selection by BioNica on 2006-09-29 12:23:58 as
	Selectionism and Neutralism in Molecular Evolution [My Copy] Mol Biol Evol, Vol. 22, No. 12. (1 December 2005), pp. 2318-2342. by Masatoshi Nei posted to selection by BioNica on 2006-09-29 12:21:34 as along with 11 people and 2 groups codonusage aprasad gjuggler stevanspringer operon akifumi penka timflutre ankur_iitg ArtemPankin druvus Nie FAB-lab
	Directed Mutagenesis Confirms the Functional Importance of Positively Selected Sites in Polygalacturonase Inhibitor Protein [My Copy] Molecular Biology and Evolution, Vol. 22, No. 7. (15 July 2005), pp. 1531-1534. by J. G. Bishop posted to selection by BioNica on 2006-09-29 12:13:30 as along with 1 person stevanspringer
	Rapid evolution in plant chitinases: Molecular targets of selection in plant-pathogen coevolution [My Copy] PNAS, Vol. 97, No. 10. (9 May 2000), pp. 5322-5327. by J. G. Bishop, A. M. Dean, T. Mitchell-Olds posted to chitinases selection by BioNica on 2006-09-29 12:11:24 as

Note: You may cite this page as: http://www.citeulike.org/user/BioNica/tag/selection

method	85
alignment	67
evolution	64
pathogenesis-related	63
chitinases	61
model	36
plant	34
selection	34
phylogeny	30
pr04	30
pr12	30
database	25
pr03	25
defensin	23
protein	23
defense	22
antifungal	20
peroxidase	19
pr08	19
pr11	17
pr13	17
pr02	16
pr14	16
chitin-binding	15
duplication	15
pr09	15
pr17	15
expression	14
germin-like	14
glycoside_hydrolases	14
resistance	13
germin	12
paml	12
phylogenetic	12
programs	12
codon	11
homology	11
oxalate-oxidase	11
structure	11
hordeum	10
polyploidy	10
thionin	10
antimicrobial	9
hmm	9
pr10	9
triticum	9
pr05	8
pr06	8
proteins	8
classics	7
hevein	7
phylogenetics	7
pr01	7
pr15	7
pr16	7
bioinformatics	6
evaluation	6
family	6
maximum_likelihood	6
modeling	6
plant-pathogen	6
plant-pathogenic	6
allergens	5
darwinian	5
dna	5
evolutionary	5
gene_code	5
glucanases	5
positive	5
powdery_mildew	5
pr1	5
wound-inducible	5
adaptive	4
analyses	4
color	4
dca	4
pr	4
pr07	4
pr5	4
sar	4
simulations	4
solanum	4
zea	4
antibiotic	3
classification	3
gymnosperms	3
likelihood	3
molecular_evolution	3
mutation	3
oxidative_burst	3
speciation	3
synergy	3
bayes	2
bayesian	2
blast	2
bootstrap	2
darwin	2
discussion	2
disease	2
ferrofluids	2
infection	2
inhibitor	2
molecular	2
multigenic	2
njplot	2
peptide	2
phyml	2
r-genes	2
ros	2
signal_transduction	2
tree-puzzle	2
aphid	1
arabidopsis	1
at2g14610	1
at2g37130	1
bacteria	1
basic	1
capsicum	1
cdna	1
cross-linking	1
dnatagger	1
ecology	1
ecosystem	1
fungal	1
gene-fusion	1
genetic-mapping	1
hybrid	1
induced	1
induction	1
isr	1
leaf-gall	1
malus	1
metabolism	1
metaphors	1
msa	1
nbd-arc	1
nectarin	1
neurobiology	1
neutral	1
neutrality	1
nicotiana	1
non-neutral	1
pathogenicity	1
pepper	1
physcomitrella	1
physiology	1
plant-insect	1
pollen	1
powdery-mildew	1
pr18	1
prank	1
proteinase	1
proteinase-inhibitor	1
protein-coding	1
reconstruction	1
review	1
secretory	1
serine_protease	1
superoxide_dismutase	1
synonymous	1
systemic	1
tree-thinking	1
upgma	1
xylanase	1

BioNica's selection [34 articles] Export

BioNica's tags