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Borelli's library [850 articles]

Recent papers added to Borelli's library.
  • Dynamic analysis of integrated signaling, metabolic, and regulatory networks.
    PLoS computational biology, Vol. 4, No. 5. (May 2008)
    by JM Lee, EP Gianchandani, JA Eddy, JA Papin
  • Community Structure in Directed Networks
    Physical Review Letters, Vol. 100, No. 11. (2008)
    by EA Leicht, MEJ Newman
    posted to networks directed_networks community by Borelli on 2008-09-03 15:43:13 as ** along with 1 person orahcio
  • An Arabidopsis gene network based on the graphical Gaussian model.
    Genome research, Vol. 17, No. 11. (November 2007), pp. 1614-1625.
    by S Ma, Q Gong, HJ Bohnert
    posted to partial_correlation network arabidopsis by Borelli on 2008-09-02 10:52:29 as **
  • Survival of the sparsest: robust gene networks are parsimonious
    Mol Syst Biol, Vol. 4 (2008)
    by Robert D Leclerc
  • Einstein, Eddington and the 1919 Eclipse
    (27 Feb 2001)
    by Peter Coles
  • Social network analysis: A methodological introduction
    Asian Journal of Social Psychology, Vol. 11, No. 1. (March 2008), pp. 13-41.
  • Geometric Interpretation of Gene Coexpression Network Analysis
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000117.
    by Steve Horvath, Jun Dong
  • Graph theory and networks in Biology
    IET Systems Biology, Vol. 1, No. 2. (2007), pp. 89-119.
    by Oliver Mason, Mark Verwoerd
    posted to networks review by Borelli on 2008-08-25 19:14:11 as **
  • The architecture of complex weighted networks
    PNAS, Vol. 101, No. 11. (16 March 2004), pp. 3747-3752.
    posted to networks weighted_networks by Borelli on 2008-08-22 19:09:22 as ** along with 1 person gcalda
  • Stochastic Transcriptional Regulatory Systems with Time Delays: A Mean-Field Approximation
    Journal of Computational Biology, Vol. 13, No. 5. (2006), pp. 1049-1076.
    by John Goutsias, Seungchan Kim
    posted to regulatory_network by Borelli on 2008-08-22 18:53:44 as ** along with 1 person verdicchio
  • Electronic Publication and the Narrowing of Science and Scholarship
    Science, Vol. 321, No. 5887. (18 July 2008), pp. 395-399.
    by James A Evans
  • Analysis of weighted networks
    Physical Review E, Vol. 70, No. 5. (24 November 2004), 056131.
    by MEJ Newman
    posted to networks weighted_networks by Borelli on 2008-08-22 16:43:20 as ** along with 2 people lshaw Diego_Prada
  • Emergence of Scaling in Random Networks
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512.
    by Albert-László Barabási, Réka Albert
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
  • A History of Markov Chain Monte Carlo--Subjective Recollections from Incomplete Data--
    (21 Aug 2008)
    by Christian Robert, George Casella
    posted to history mcmc statistics by Borelli on 2008-08-22 11:36:40 as ** along with 3 people ansobol AbnerCYH dah
  • Complex networks: small-world, scale-free and beyond
    Circuits and Systems Magazine, IEEE, Vol. 3, No. 1. (2003), pp. 6-20.
    by Xiao F Wang, Guanrong Chen
  • Signatures of small-world and scale-free properties in large computer programs
    Physical Review E, Vol. 68 (2003)
    by Alessandro P de Moura, Ying-Cheng Lai, Adilson E Motter
    posted to community networks scale_free small_world by Borelli on 2008-08-21 11:24:07 as **
  • Classification of scale-free networks.
    Proc Natl Acad Sci U S A, Vol. 99, No. 20. (1 October 2002), pp. 12583-12588.
    by KI Goh, E Oh, H Jeong, B Kahng, D Kim
  • Evolution of Evolvability in Gene Regulatory Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112.
    by Anton Crombach, Paulien Hogeweg
  • The Structure and Function of Complex Networks
    SIAM Review, Vol. 45, No. 2. (2003), pp. 167-256.
    by MEJ Newman
  • Advanced Theory of Statistics
    (1973)
    by Maurice Kendall, Alan Stuart
    posted to statistics by Borelli on 2008-08-20 18:39:31 as **
  • Networking metabolites and diseases
    Proceedings of the National Academy of Sciences, Vol. 105, No. 29. (22 July 2008), pp. 9849-9850.
    by Pascal Braun, Edward Rietman, Marc Vidal
  • Lectures on Probability, Entropy, and Statistical Physics
    (31 Jul 2008)
    by Ariel Caticha
  • The implications of human metabolic network topology for disease comorbidity.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 29. (22 July 2008), pp. 9880-9885.
    by DS Lee, J Park, KA Kay, NA Christakis, ZN Oltvai, AL Barabási
    posted to disease metabolomics networks by Borelli on 2008-08-20 14:35:48 as ** along with 2 people ptrobajo jyuh
  • Finding groups in gene expression data.
    Journal of biomedicine & biotechnology, Vol. 2005, No. 2. (30 June 2005), pp. 215-225.
    by DJ Hand, NA Heard
  • An empirical Bayes approach to inferring large-scale gene association networks
    Bioinformatics, Vol. 21, No. 6. (15 March 2005), pp. 754-764.
    by Schafer Juliane, Strimmer Korbinian
    posted to gene genomics networks by Borelli on 2008-08-20 14:35:03 as ** along with 3 people jo_davies srp33 gabe_rosser
  • Cytoscape: a software environment for integrated models of biomolecular interaction networks.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2498-2504.
    by P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, B Schwikowski, T Ideker
  • Towards zoomable multidimensional maps of the cell
    Nature Biotechnology, Vol. 25, No. 5. (04 May 2007), pp. 547-554.
    by Zhenjun Hu, Joe Mellor, Jie Wu, Minoru Kanehisa, Joshua M Stuart, Charles Delisi
  • A synthetic oscillatory network of transcriptional regulators.
    Nature, Vol. 403, No. 6767. (20 January 2000), pp. 335-338.
    by MB Elowitz, S Leibler
  • reCAPTCHA: Human-Based Character Recognition via Web Security Measures
    Science (14 August 2008), 1160379.
    by Luis von Ahn, Benjamin Maurer, Colin Mcmillen, David Abraham, Manuel Blum
    posted to captcha ocr by Borelli on 2008-08-15 11:32:56 as ** along with 2 people pablog meikipp
  • Computational methods for complex stochastic systems: a review of some alternatives to MCMC
    Statistics and Computing, Vol. 18, No. 2. (1 June 2008), pp. 151-171.
    by Paul Fearnhead
    posted to mcmc stochastic_process by Borelli on 2008-08-14 23:31:23 as ** along with 1 person pcarbo
  • A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell
    Cell, Vol. 131, No. 7. (28 December 2007), pp. 1354-1365.
    by Richard Bonneau, Marc T Facciotti, David J Reiss, Amy K Schmid, Min Pan, Amardeep Kaur, Vesteinn Thorsson, Paul Shannon, Michael H Johnson, Christopher J Bare, William Longabaugh, Madhavi Vuthoori, Kenia Whitehead, Aviv Madar, Lena Suzuki, Tetsuya Mori, Dong-Eun Chang, Jocelyne Diruggiero, Carl H Johnson, Leroy Hood, Nitin S Baliga
  • Metabolic rate does not calibrate the molecular clock.
    Proc Natl Acad Sci U S A, Vol. 104, No. 39. (25 September 2007), pp. 15388-15393.
    by R Lanfear, JA Thomas, JJ Welch, T Brey, L Bromham
  • Classes of small-world networks.
    Proc Natl Acad Sci U S A, Vol. 97, No. 21. (10 October 2000), pp. 11149-11152.
    by LA Amaral, A Scala, M Barthelemy, HE Stanley
  • Gene regulatory network reconstruction by bayesian integration of prior knowledge and/or different experimental conditions.
    Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 543-572.
    by AV Werhli, D Husmeier
  • A fortunate choice: the history of Arabidopsis as a model plant.
    Nature reviews. Genetics, Vol. 3, No. 11. (November 2002), pp. 883-889.
    posted to arabidopsis review by Borelli on 2008-08-08 11:42:02 as ** along with 1 person moborg
  • Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection
    The Plant Journal, Vol. 48, No. 1. (October 2006), pp. 28-44.
    by Synan Abuqamar, Xi Chen, Rahul Dhawan, Burton Bluhm, John Salmeron, Stephen Lam, Robert A Dietrich, Tesfaye Mengiste
    posted to arabidopsis botrytis by Borelli on 2008-08-08 09:58:12 as **
  • Identification of <i>Botrytis cinerea</i> susceptibility loci in <i>Arabidopsis thaliana</i>
    The Plant Journal, Vol. 38, No. 3. (2004), pp. 473-486.
    by Katherine J Denby, Pavan Kumar, Daniel J Kliebenstein
    posted to arabidopsis botrytis by Borelli on 2008-08-08 09:56:16 as **
  • Wounding of Arabidopsis leaves causes a powerful but transient protection against <i>Botrytis</i> infection
    The Plant Journal, Vol. 55, No. 4. (2008), pp. 555-567.
    by Céline Chassot, Antony Buchala, Henk-Jan Schoonbeek, Jean-Pierre Métraux, Olivier Lamotte
    posted to arabidopsis botrytis by Borelli on 2008-08-08 09:55:30 as **
  • Plant Circadian Rhythms
    Plant Cell, Vol. 18, No. 4. (1 April 2006), pp. 792-803.
    by Robertson C Mcclung
    posted to arabidopsis circadian plant review by Borelli on 2008-08-07 12:13:47 as **
  • Post-translational regulation of the Arabidopsis circadian clock through selective proteolysis and phosphorylation of pseudo- response regulator proteins
    J. Biol. Chem. (18 June 2008), M803471200.
    by Sumire Fujiwara, Lei Wang, Linqu Han, Sung-Suk Suh, Patrice A Salome, Robertson C Mcclung, David E Somers
    posted to arabidopsis circadian by Borelli on 2008-08-06 09:10:05 as ** along with 1 person jmjimenez
  • Social Network Sites: Definition, History, and Scholarship
    Journal of Computer-Mediated Communication, Vol. 13, No. 1. (2007), pp. 210-230.
    by Danah, Nicole B Ellison
  • The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana.
    Nature, Vol. 419, No. 6902. (5 September 2002), pp. 74-77.
    by MR Doyle, SJ Davis, RM Bastow, HG McWatters, L Kozma-Bognár, F Nagy, AJ Millar, RM Amasino
    posted to arabidopsis circadian elf4 by Borelli on 2008-08-01 16:26:50 as ** along with 1 person Happybene
  • New Insights into the Placebo and Nocebo Responses
    Neuron, Vol. 59, No. 2. (31 July 2008), pp. 195-206.
    by Paul Enck, Fabrizio Benedetti, Manfred Schedlowski
    posted to neuroscience nocebo placebo by Borelli on 2008-07-31 17:38:41 as ** along with 1 person isami
  • Forrest Mims Engineer's Notebook
    (30 August 1992)
    by Forrest Mims
    posted to electronics reference tutorial by Borelli on 2008-07-28 19:25:15 as **
  • Computing Knock-Out Strategies in Metabolic Networks
    Journal of Computational Biology, Vol. 15, No. 3. (2008), pp. 259-268.
    by Utz-Uwe Haus, Steffen Klamt, Tamon Stephen
  • Metabolomics, machine learning and modelling: towards an understanding of the language of cells.
    Biochemical Society transactions, Vol. 33, No. Pt 3. (June 2005), pp. 520-524.
    by DB Kell
    posted to metabolomics review by Borelli on 2008-07-25 10:02:40 as ** along with 1 person JeremyZucker
  • Statistical analysis of the social network and discussion threads in slashdot
    (2008), pp. 645-654.
    by Vicen\cc Gómez, Andreas Kaltenbrunner, Vicente López
    posted to fun networks by Borelli on 2008-07-25 08:06:11 as ** along with 4 people tnhh rrbarb davidchavalarias ChaTo
  • Network motifs: theory and experimental approaches
    Nature Reviews Genetics, Vol. 8, No. 6., pp. 450-461.
    by Uri Alon
  • Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana.
    Mol Syst Biol, Vol. 2 (2006)
    by JC Locke, L Kozma-Bognár, PD Gould, B Fehér, E Kevei, F Nagy, MS Turner, A Hall, AJ Millar
    posted to arabidopsis circadian clock network by Borelli on 2008-07-24 14:55:47 as ** along with 1 person Happybene
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