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Borelli's library [850 articles]

Recent papers added to Borelli's library.
  • Dynamic analysis of integrated signaling, metabolic, and regulatory networks.
    PLoS computational biology, Vol. 4, No. 5. (May 2008)
    by JM Lee, EP Gianchandani, JA Eddy, JA Papin
    posted to regulatory_network networks dynamics by Borelli on 2008-09-05 07:15:15 as ** along with 5 people nolodie bootsy roys lymxz Ema
  • Community Structure in Directed Networks
    Physical Review Letters, Vol. 100, No. 11. (2008)
    by EA Leicht, MEJ Newman
    posted to networks directed_networks community by Borelli on 2008-09-03 15:43:13 as ** along with 1 person orahcio
  • An Arabidopsis gene network based on the graphical Gaussian model.
    Genome research, Vol. 17, No. 11. (November 2007), pp. 1614-1625.
    by S Ma, Q Gong, HJ Bohnert
    posted to partial_correlation network arabidopsis by Borelli on 2008-09-02 10:52:29 as **
  • Survival of the sparsest: robust gene networks are parsimonious
    Mol Syst Biol, Vol. 4 (2008)
    by Robert D Leclerc
    posted to networks by Borelli on 2008-09-01 18:49:59 as ** along with 6 people sg45653 bootsy Retchless maralena bpcusack reyez
  • Einstein, Eddington and the 1919 Eclipse
    (27 Feb 2001)
    by Peter Coles
    posted to astrophysics history by Borelli on 2008-09-01 10:25:15 as ** along with 4 people and 2 groups jjray ansobol A_Olympia rxt Philosophy_of_Information Blog_and_Wiki_Research
  • Social network analysis: A methodological introduction
    Asian Journal of Social Psychology, Vol. 11, No. 1. (March 2008), pp. 13-41.
    by Butts, T Carter
    posted to networks review socialnetwork sociology by Borelli on 2008-08-27 10:07:35 as ** along with 4 people orzenil abellogin spool rrbarb
  • Geometric Interpretation of Gene Coexpression Network Analysis
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000117.
    by Steve Horvath, Jun Dong
    posted to correlation gene networks by Borelli on 2008-08-26 14:59:14 as ** along with 8 people kengg roys Ema tmmurali Totobox AbnerCYH davidchavalarias caseybrown
  • Graph theory and networks in Biology
    IET Systems Biology, Vol. 1, No. 2. (2007), pp. 89-119.
    by Oliver Mason, Mark Verwoerd
    posted to networks review by Borelli on 2008-08-25 19:14:11 as **
  • The architecture of complex weighted networks
    PNAS, Vol. 101, No. 11. (16 March 2004), pp. 3747-3752.
    by A Barrat, M Barthelemy, R Pastor-Satorras, A Vespignani
    posted to networks weighted_networks by Borelli on 2008-08-22 19:09:22 as ** along with 1 person gcalda
  • Stochastic Transcriptional Regulatory Systems with Time Delays: A Mean-Field Approximation
    Journal of Computational Biology, Vol. 13, No. 5. (2006), pp. 1049-1076.
    by John Goutsias, Seungchan Kim
    posted to regulatory_network by Borelli on 2008-08-22 18:53:44 as ** along with 1 person verdicchio
  • Electronic Publication and the Narrowing of Science and Scholarship
    Science, Vol. 321, No. 5887. (18 July 2008), pp. 395-399.
    by James A Evans
    posted to history science sociology by Borelli on 2008-08-22 17:42:01 as ** along with 23 people and 6 groups samjlord xjlibod stringertheory mmkurth rrbarb pandegroup achinerarias diomede root jago Gaetan yori shivakmr dullhunk ArtemPankin ricmilne kharke katiehumphry garo scholze ajaymalik markymaypo gulsacan moernerlab CUL Study Group VisionLab Khavkin's lab Academic Writing, Literacies and Discourse ARTFL
  • Analysis of weighted networks
    Physical Review E, Vol. 70, No. 5. (24 November 2004), 056131.
    by MEJ Newman
    posted to networks weighted_networks by Borelli on 2008-08-22 16:43:20 as ** along with 2 people lshaw Diego_Prada
  • Emergence of Scaling in Random Networks
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512.
    by Albert-László Barabási, Réka Albert
    posted to networks power_law scale_free by Borelli on 2008-08-22 15:05:51 as ** along with 20 people dragonrez shivaram tolosoft balicea ddahlem merazzle muraken lshaw gurkanbebek jaspervoskuilen rcrane ransombriggs idreams2 nkishan justforscraps Evangelia kb Diego_Prada subhacom ethkim
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to networks protein by Borelli on 2008-08-22 13:57:30 as ** along with 7 people bicko neils Evangelia grahamc paolomarcatili phoenixzxl zwang
  • A History of Markov Chain Monte Carlo--Subjective Recollections from Incomplete Data--
    (21 Aug 2008)
    by Christian Robert, George Casella
    posted to history mcmc statistics by Borelli on 2008-08-22 11:36:40 as ** along with 3 people ansobol AbnerCYH dah
  • Complex networks: small-world, scale-free and beyond
    Circuits and Systems Magazine, IEEE, Vol. 3, No. 1. (2003), pp. 6-20.
    by Xiao F Wang, Guanrong Chen
    posted to community networks scale_free small_world by Borelli on 2008-08-21 11:28:00 as ** along with 1 person and 1 group VRadenovic DSTO-CAS
  • Signatures of small-world and scale-free properties in large computer programs
    Physical Review E, Vol. 68 (2003)
    by Alessandro P de Moura, Ying-Cheng Lai, Adilson E Motter
    posted to community networks scale_free small_world by Borelli on 2008-08-21 11:24:07 as **
  • Classification of scale-free networks.
    Proc Natl Acad Sci U S A, Vol. 99, No. 20. (1 October 2002), pp. 12583-12588.
    by KI Goh, E Oh, H Jeong, B Kahng, D Kim
    posted to community networks power_law scale_free small_world by Borelli on 2008-08-21 10:34:16 as ** along with 8 people shivaram bigbossman merazzle zflavio grahamc marymcglo Evangelia spool
  • Evolution of Evolvability in Gene Regulatory Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112.
    by Anton Crombach, Paulien Hogeweg
    posted to regulatory_network by Borelli on 2008-08-21 10:09:45 as ** along with 11 people and 1 group aramesh2 erel10 Ema jdiezperezj bootsy dlobo Stew djkt dquest shoshin rebeccamancy GEB
  • The Structure and Function of Complex Networks
    SIAM Review, Vol. 45, No. 2. (2003), pp. 167-256.
    by MEJ Newman
    posted to networks review by Borelli on 2008-08-20 19:07:52 as ** along with 19 people and 2 groups matteodellamico eyliu afragop merazzle muraken lshaw jaspervoskuilen timflutre gcalda gi0rgi0ne rcrane shikin nolodie stefanoallesina eustatic skumagai ilkert rrbarb ebalp Complex_Real_Networks EntrepreneurialRisks
  • Advanced Theory of Statistics
    (1973)
    by Maurice Kendall, Alan Stuart
    posted to statistics by Borelli on 2008-08-20 18:39:31 as **
  • Networking metabolites and diseases
    Proceedings of the National Academy of Sciences, Vol. 105, No. 29. (22 July 2008), pp. 9849-9850.
    by Pascal Braun, Edward Rietman, Marc Vidal
    posted to disease metabolomics networks by Borelli on 2008-08-20 14:36:44 as ** along with 3 people ptrobajo jyuh AbnerCYH
  • Lectures on Probability, Entropy, and Statistical Physics
    (31 Jul 2008)
    by Ariel Caticha
    posted to bayesian entropy probability statistical_physics tutorial by Borelli on 2008-08-20 14:36:23 as ** along with 8 people pdlug gniebler travieso petr cager ansobol jjray sbarthelme
  • The implications of human metabolic network topology for disease comorbidity.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 29. (22 July 2008), pp. 9880-9885.
    by DS Lee, J Park, KA Kay, NA Christakis, ZN Oltvai, AL Barabási
    posted to disease metabolomics networks by Borelli on 2008-08-20 14:35:48 as ** along with 2 people ptrobajo jyuh
  • Finding groups in gene expression data.
    Journal of biomedicine & biotechnology, Vol. 2005, No. 2. (30 June 2005), pp. 215-225.
    by DJ Hand, NA Heard
    posted to community gene genomics microarray review by Borelli on 2008-08-20 14:35:29 as ** along with 2 people isimpson gabe_rosser
  • An empirical Bayes approach to inferring large-scale gene association networks
    Bioinformatics, Vol. 21, No. 6. (15 March 2005), pp. 754-764.
    by Schafer Juliane, Strimmer Korbinian
    posted to gene genomics networks by Borelli on 2008-08-20 14:35:03 as ** along with 3 people jo_davies srp33 gabe_rosser
  • Cytoscape: a software environment for integrated models of biomolecular interaction networks.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2498-2504.
    by P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, B Schwikowski, T Ideker
    posted to cytoscape networks tool visualisation by Borelli on 2008-08-16 17:30:31 as ** along with 12 people and 3 groups dragonrez balajis tvdbulck frohike carmaus dagmar natstreet jlh64 Evangelia pmendes yggdrasil carlk dIEMoSIRIS MoSi-Rostock compneur
  • Towards zoomable multidimensional maps of the cell
    Nature Biotechnology, Vol. 25, No. 5. (04 May 2007), pp. 547-554.
    by Zhenjun Hu, Joe Mellor, Jie Wu, Minoru Kanehisa, Joshua M Stuart, Charles Delisi
    posted to networks visant visualisation by Borelli on 2008-08-16 17:18:33 as ** along with 10 people tmmurali kuhn cmmorel yas balajis thomaskelder dullhunk jyuh AlexanderPico carlk
  • A synthetic oscillatory network of transcriptional regulators.
    Nature, Vol. 403, No. 6767. (20 January 2000), pp. 335-338.
    by MB Elowitz, S Leibler
    posted to model motifs networks regulatory_network by Borelli on 2008-08-16 09:57:10 as ** along with 11 people rklancer dgront sharatjv mhucka margaritis Grobi msuarezdiez tvdbulck austin jjray dagmar
  • reCAPTCHA: Human-Based Character Recognition via Web Security Measures
    Science (14 August 2008), 1160379.
    by Luis von Ahn, Benjamin Maurer, Colin Mcmillen, David Abraham, Manuel Blum
    posted to captcha ocr by Borelli on 2008-08-15 11:32:56 as ** along with 2 people pablog meikipp
  • Computational methods for complex stochastic systems: a review of some alternatives to MCMC
    Statistics and Computing, Vol. 18, No. 2. (1 June 2008), pp. 151-171.
    by Paul Fearnhead
    posted to mcmc stochastic_process by Borelli on 2008-08-14 23:31:23 as ** along with 1 person pcarbo
  • A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell
    Cell, Vol. 131, No. 7. (28 December 2007), pp. 1354-1365.
    by Richard Bonneau, Marc T Facciotti, David J Reiss, Amy K Schmid, Min Pan, Amardeep Kaur, Vesteinn Thorsson, Paul Shannon, Michael H Johnson, Christopher J Bare, William Longabaugh, Madhavi Vuthoori, Kenia Whitehead, Aviv Madar, Lena Suzuki, Tetsuya Mori, Dong-Eun Chang, Jocelyne Diruggiero, Carl H Johnson, Leroy Hood, Nitin S Baliga
    posted to no-tag by Borelli on 2008-08-13 17:28:36 as ** along with 7 people jyuh tmmurali raiyar oelemento emptyhb megraw roys
  • Metabolic rate does not calibrate the molecular clock.
    Proc Natl Acad Sci U S A, Vol. 104, No. 39. (25 September 2007), pp. 15388-15393.
    by R Lanfear, JA Thomas, JJ Welch, T Brey, L Bromham
    posted to circadian clock by Borelli on 2008-08-13 10:59:02 as ** along with 3 people and 2 groups kinestetika Katje rvosa microbiology_nijmegen FAB-lab
  • Classes of small-world networks.
    Proc Natl Acad Sci U S A, Vol. 97, No. 21. (10 October 2000), pp. 11149-11152.
    by LA Amaral, A Scala, M Barthelemy, HE Stanley
    posted to networks small_world by Borelli on 2008-08-11 22:58:29 as ** along with 22 people and 11 groups camster KAllendoerfer xxc zqshen ChaTo yoh cristinaalp mmt kubyaddi muraken mattjb RafG jaspervoskuilen PaulBHartzog yidao mylit JimFolk dejori Evangelia stefanoallesina subhacom Diego_Prada dbk-lab Blog_and_Wiki_Research GraphVis Wikipedia ETEC533 ComplexAdaptiveSystems DSTO-CAS ic4 generif_paper CSU_School_of_Education Web2-0_Education
  • Gene regulatory network reconstruction by bayesian integration of prior knowledge and/or different experimental conditions.
    Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 543-572.
    by AV Werhli, D Husmeier
    posted to bayesian bayesian_network regulatory_network by Borelli on 2008-08-10 10:50:35 as ** along with 1 person jyuh
  • A fortunate choice: the history of Arabidopsis as a model plant.
    Nature reviews. Genetics, Vol. 3, No. 11. (November 2002), pp. 883-889.
    by C Somerville, M Koornneef
    posted to arabidopsis review by Borelli on 2008-08-08 11:42:02 as ** along with 1 person moborg
  • Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection
    The Plant Journal, Vol. 48, No. 1. (October 2006), pp. 28-44.
    by Synan Abuqamar, Xi Chen, Rahul Dhawan, Burton Bluhm, John Salmeron, Stephen Lam, Robert A Dietrich, Tesfaye Mengiste
    posted to arabidopsis botrytis by Borelli on 2008-08-08 09:58:12 as **
  • Identification of <i>Botrytis cinerea</i> susceptibility loci in <i>Arabidopsis thaliana</i>
    The Plant Journal, Vol. 38, No. 3. (2004), pp. 473-486.
    by Katherine J Denby, Pavan Kumar, Daniel J Kliebenstein
    posted to arabidopsis botrytis by Borelli on 2008-08-08 09:56:16 as **
  • Wounding of Arabidopsis leaves causes a powerful but transient protection against <i>Botrytis</i> infection
    The Plant Journal, Vol. 55, No. 4. (2008), pp. 555-567.
    by Céline Chassot, Antony Buchala, Henk-Jan Schoonbeek, Jean-Pierre Métraux, Olivier Lamotte
    posted to arabidopsis botrytis by Borelli on 2008-08-08 09:55:30 as **
  • Plant Circadian Rhythms
    Plant Cell, Vol. 18, No. 4. (1 April 2006), pp. 792-803.
    by Robertson C Mcclung
    posted to arabidopsis circadian plant review by Borelli on 2008-08-07 12:13:47 as **
  • Post-translational regulation of the Arabidopsis circadian clock through selective proteolysis and phosphorylation of pseudo- response regulator proteins
    J. Biol. Chem. (18 June 2008), M803471200.
    by Sumire Fujiwara, Lei Wang, Linqu Han, Sung-Suk Suh, Patrice A Salome, Robertson C Mcclung, David E Somers
    posted to arabidopsis circadian by Borelli on 2008-08-06 09:10:05 as ** along with 1 person jmjimenez
  • Social Network Sites: Definition, History, and Scholarship
    Journal of Computer-Mediated Communication, Vol. 13, No. 1. (2007), pp. 210-230.
    by Danah, Nicole B Ellison
    posted to socialnetwork sociology web by Borelli on 2008-08-06 09:09:13 as ** along with 8 people and 1 group Mandre FG abl rizomatica ramonovelar mrogers59 samonthenet rrbarb LearningTechnologies
  • The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana.
    Nature, Vol. 419, No. 6902. (5 September 2002), pp. 74-77.
    by MR Doyle, SJ Davis, RM Bastow, HG McWatters, L Kozma-Bognár, F Nagy, AJ Millar, RM Amasino
    posted to arabidopsis circadian elf4 by Borelli on 2008-08-01 16:26:50 as ** along with 1 person Happybene
  • New Insights into the Placebo and Nocebo Responses
    Neuron, Vol. 59, No. 2. (31 July 2008), pp. 195-206.
    by Paul Enck, Fabrizio Benedetti, Manfred Schedlowski
    posted to neuroscience nocebo placebo by Borelli on 2008-07-31 17:38:41 as ** along with 1 person isami
  • Forrest Mims Engineer's Notebook
    (30 August 1992)
    by Forrest Mims
    posted to electronics reference tutorial by Borelli on 2008-07-28 19:25:15 as **
  • Computing Knock-Out Strategies in Metabolic Networks
    Journal of Computational Biology, Vol. 15, No. 3. (2008), pp. 259-268.
    by Utz-Uwe Haus, Steffen Klamt, Tamon Stephen
    posted to cost knockout networks by Borelli on 2008-07-25 16:49:49 as ** along with 5 people and 1 group tmmurali ptrobajo balicea jiny longoka Frontiers in Diabetes and Obesity
  • Metabolomics, machine learning and modelling: towards an understanding of the language of cells.
    Biochemical Society transactions, Vol. 33, No. Pt 3. (June 2005), pp. 520-524.
    by DB Kell
    posted to metabolomics review by Borelli on 2008-07-25 10:02:40 as ** along with 1 person JeremyZucker
  • Statistical analysis of the social network and discussion threads in slashdot
    (2008), pp. 645-654.
    by Vicen\cc Gómez, Andreas Kaltenbrunner, Vicente López
    posted to fun networks by Borelli on 2008-07-25 08:06:11 as ** along with 4 people tnhh rrbarb davidchavalarias ChaTo
  • Network motifs: theory and experimental approaches
    Nature Reviews Genetics, Vol. 8, No. 6., pp. 450-461.
    by Uri Alon
    posted to motifs review by Borelli on 2008-07-24 15:02:22 as ** along with 14 people and 3 groups icases aalibes cmmorel jtaylor dbikard margaritis shigepong zwang grinfish Pascalichouchou xingxu karfunkel vietanh0 haarcuba TNT Centre de Recherches Interdisciplinaires SynBioSys
  • Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana.
    Mol Syst Biol, Vol. 2 (2006)
    by JC Locke, L Kozma-Bognár, PD Gould, B Fehér, E Kevei, F Nagy, MS Turner, A Hall, AJ Millar
    posted to arabidopsis circadian clock network by Borelli on 2008-07-24 14:55:47 as ** along with 1 person Happybene
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