Borelli's regulatory_network [38 articles] Export

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	Gene regulatory networks: A coarse-grained, equation-free approach to multiscale computation [My Copy] The Journal of Chemical Physics, Vol. 124, No. 8. (2006), 084106. by Radek Erban, Ioannis G. Kevrekidis, David Adalsteinsson, Timothy C. Elston posted to regulatory_network multiscale gene_expression equation-free by Borelli on 2009-11-11 17:12:17 as along with 1 person nurban
	Modeling and simulation of genetic regulatory systems: a literature review. [My Copy] J Comput Biol, Vol. 9, No. 1. (January 2002), pp. 67-103. by H. de Jong posted to simulation review regulatory_network gene_expression by Borelli on 2009-10-04 13:58:40 as along with 27 people and 6 groups mjoach qluo antonkratz reyez tlse65 wangbo dlobo jago behindtherabbit cswinburne ggallone softsimu eldan tmmurali bayesian balicea Happybene wnpx kengg noano sstoma josepe dagmar jo_davies roys maburkitt phoenixzxl smac GEB Jarman Lab VirtualPlants Plantandetc compneur
	Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R97. by James Costello, Mehmet Dalkilic, Scott Beason, et al.Jeff Gehlhausen, Rupali Patwardhan, Sumit Middha, Brian Eads, Justen Andrews posted to regulatory_network drosophilia by Borelli on 2009-09-24 10:16:13 as along with 8 people and 2 groups meanerelk abc623 carlk bdessailly sotacam kiekyon druvus daveGerrard Orengo Group Journal Picks BergmanLab
	Beyond Element-Wise Interactions: Identifying Complex Interactions in Biological Processes [My Copy] PLoS ONE, Vol. 4, No. 9. (23 September 2009), e6899. by Christophe Ladroue, Shuixia Guo, Keith Kendrick, Jianfeng Feng posted to regulatory_network networks granger by Borelli on 2009-09-23 14:58:23 as along with 3 people qluo scmelton johnabender
	Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions [My Copy] Genome Biology, Vol. 10, No. 9. (15 September 2009), R96. by Javier Carrera, Guillermo Rodrigo, Alfonso Jaramillo, Santiago Elena posted to regulatory_network arabidopsis by Borelli on 2009-09-23 08:57:03 as along with 5 people megraw TRHvidsten sotacam kiekyon natstreet
	Inferring gene regulatory networks from time series data using the minimum description length principle [My Copy] Bioinformatics, Vol. 22, No. 17. (1 September 2006), pp. 2129-2135. by Wentao Zhao, Erchin Serpedin, Edward R. Dougherty posted to time-series regulatory_network networks by Borelli on 2009-09-17 18:13:38 as
	From gene expression to gene regulatory networks in Arabidopsis thaliana [My Copy] BMC Systems Biology, Vol. 3, No. 1. (3 September 2009), 85. by Chris Needham, Iain Manfield, Andrew Bulpitt, Philip Gilmartin, David Westhead posted to regulatory_network gene_regulatory_networks arabidopsis by Borelli on 2009-09-11 23:07:36 as along with 9 people idonaldson pengchy ptrobajo danmaclean TRHvidsten rmk barriot natstreet druvus
	Can a biologist fix a radio?--Or, what I learned while studying apoptosis. [My Copy] Cancer cell, Vol. 2, No. 3. (September 2002), pp. 179-182. by Yuri Lazebnik posted to apoptosis biology regulatory_network by Borelli on 2009-08-10 17:39:05 as along with 22 people and 6 groups daforerog cambray arne allysonlister babakap rschulz rklancer dbk irenas manduca monod chihchun_chen massivemayhem gisle Tominator mattjb balicea quianominorleo tvdbulck dbikard leilaperie bayesian streptomyces dbk-lab ComplexAdaptiveSystems DSTO-CAS Centre de Recherches Interdisciplinaires SynBioSys
	Reconstruction and Structural Analysis of Metabolic and Regulatory Networks [My Copy] Introduction to Systems Biology (2007), pp. 124-146. by Hong-Wu Ma, Marcio R. Silva, Ji-Bin Sun, Bharani Kumar, An-Ping Zeng posted to network regulatory_network by Borelli on 2009-08-02 12:18:23 as along with 2 people mjoach hryk
	Transcriptional Regulatory Circuits: Predicting Numbers from Alphabets [My Copy] Science, Vol. 325, No. 5939. (24 July 2009), pp. 429-432. by Harold D. Kim, Tal Shay, Erin K. O'Shea, Aviv Regev posted to networks regulatory_network transcription_factor by Borelli on 2009-07-27 09:12:51 as along with 16 people and 1 group pkm ptrobajo rdiaz bborgeson guhjy sergiun emptyhb greg cajunsushi leliavski TRHvidsten jjray apocapoc fenghezi dswan daforerog Gene Regulation
	Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell [My Copy] Current Opinion in Cell Biology, Vol. 15, No. 2. (April 2003), pp. 221-231. by J. Tyson posted to modelling regulatory_network review tutorial by Borelli on 2009-03-05 15:24:43 as along with 9 people and 1 group saradtc tomd66 TimRooney Dangerfc joseph_x_zhou dolchan cryptochrome oelemento bayesian bioNetwork_sysBio
	Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 10. (13 May 2003), pp. 5914-5919. by Allan C. Froehlich, Jennifer J. Loros, Jay C. Dunlap posted to frequency regulatory_network by Borelli on 2009-02-17 16:59:20 as
	Design of genetic networks with specified functions by evolution in silico [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 2. (13 January 2004), pp. 580-585. by Paul FranÃ§ois, Vincent Hakim posted to evolution regulatory_network synthetic_biology by Borelli on 2009-02-17 16:43:44 as along with 8 people meanerelk rouault rklancer eldan monod dbikard discreteonyxorb mjoach
	Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells [My Copy] BMC Bioinformatics, Vol. 9 (29 September 2008), 404. by Atsushi Niida, Andrew D. Smith, Seiya Imoto, et al.Shuichi Tsutsumi, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama posted to cancer regulatory_network by Borelli on 2009-02-17 10:43:47 as along with 5 people Zephyrus druvus jfr xili03 pengchy
	Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. [My Copy] Genes & development, Vol. 22, No. 18. (15 September 2008), pp. 2550-2563. by C. Zhang, Z. Zhang, J. Castle, et al.S. Sun, J. Johnson, A. R. Krainer, M. Q. Zhang posted to fox regulatory_network by Borelli on 2009-02-17 10:38:22 as along with 2 people roys mbj
	Inference of gene regulatory networks and compound mode of action from time course gene expression profiles [My Copy] Bioinformatics, Vol. 22, No. 7. (1 April 2006), pp. 815-822. by Mukesh Bansal, Giusy D. Gatta, Diego di Bernardo posted to regulatory_network by Borelli on 2009-01-28 11:44:30 as along with 4 people and 1 group ggallone cswinburne ivokwee tvdbulck Jarman Lab
	How to infer gene networks from expression profiles [My Copy] Molecular Systems Biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted to regulatory_network review by Borelli on 2009-01-28 11:35:46 as along with 38 people and 3 groups Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia tmmurali Jarman Lab EBI-regulation Plantandetc
	Computational discovery of gene modules and regulatory networks [My Copy] Nat Biotech, Vol. 21, No. 11. (12 October 2003), pp. 1337-1342. by Ziv Bar-Joseph, Georg K. Gerber, Tong I. Lee, et al.Nicola J. Rinaldi, Jane Y. Yoo, Francois Robert, D. Benjamin Gordon, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted to gene_regulation regulatory_network by Borelli on 2009-01-22 16:19:33 as along with 16 people and 1 group stharward myzhang wangbo ggrot dragonrez bayesian wnpx nickluscombe koller frohike karfunkel roys dquest balicea carlk tvdbulck EBI-regulation
	The evolution of hierarchical gene regulatory networks [My Copy] Nat Rev Genet, Vol. 10, No. 2. (February 2009), pp. 141-148. by Douglas H. Erwin, Eric H. Davidson posted to evolution regulatory_network by Borelli on 2009-01-16 16:44:39 as along with 10 people PabloMarin Scis0000002 erel10 ynaito dakelley wangbo natstreet druvus balicea balabu
	Current approaches to gene regulatory network modelling [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 6. (2007), S9. by Thomas Schlitt, Alvis Brazma posted to regulatory_network review by Borelli on 2008-12-15 23:01:33 as along with 7 people antonkratz aviad_work kengg shigepong ramakris nicholasflann bertelsen
	Combinatorial control of gene expression. [My Copy] Nat Struct Mol Biol, Vol. 11, No. 9. (September 2004), pp. 812-815. by A. Reményi, H. R. Schöler, M. Wilmanns posted to gene regulatory_network transcription_factor by Borelli on 2008-11-27 11:49:04 as along with 1 group Bioinformatics
	SIRENE: supervised inference of regulatory networks. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by F. Mordelet, J. P. Vert posted to regulatory_network by Borelli on 2008-11-22 22:04:54 as along with 2 people behindtherabbit maralena
	Intrinsic noise in gene regulatory networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 98, No. 15. (17 July 2001), pp. 8614-8619. by M. Thattai, A. van Oudenaarden posted to modelling regulatory_network sde by Borelli on 2008-11-19 09:30:09 as along with 5 people sjayanthi bayesian timflutre margaritis jjray
	A sigmoidal transcriptional response: cooperativity, synergy and dosage effects [My Copy] Biological Reviews, Vol. 78, No. 01. (2003), pp. 149-170. by Reiner A. Veitia posted to regulatory_network sigmoid transcription_factor by Borelli on 2008-11-18 10:39:30 as
	Inferring Transcriptional Regulatory Networks from High-throughput Data. [My Copy] Bioinformatics (22 September 2007) by Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen posted to regulatory_network transcription_factor by Borelli on 2008-11-11 16:07:16 as along with 5 people wnpx rdiaz sebastien_vigneau shigepong cabbagezs
	Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 5. (23 May 2008), e1000086. by J. M. Lee, E. P. Gianchandani, J. A. Eddy, J. A. Papin posted to dynamics networks regulatory_network by Borelli on 2008-09-05 07:15:15 as along with 9 people schwartzjmc abhishek_tiwari raik guhjy nolodie bootsy roys lymxz Ema
	Stochastic Transcriptional Regulatory Systems with Time Delays: A Mean-Field Approximation [My Copy] Journal of Computational Biology, Vol. 13, No. 5. (2006), pp. 1049-1076. by John Goutsias, Seungchan Kim posted to regulatory_network by Borelli on 2008-08-22 18:53:44 as along with 2 people behindtherabbit verdicchio
	Evolution of Evolvability in Gene Regulatory Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112. by Anton Crombach, Paulien Hogeweg posted to regulatory_network by Borelli on 2008-08-21 10:09:45 as along with 18 people and 1 group tomhebbron roys mjoach semrich wangbo kaarsinogen renatomilani aramesh2 erel10 Ema jdiezperezj bootsy dlobo Stew djkt dquest shoshin rebeccamancy GEB
	A synthetic oscillatory network of transcriptional regulators. [My Copy] Nature, Vol. 403, No. 6767. (20 January 2000), pp. 335-338. by M. B. Elowitz, S. Leibler posted to model motifs networks regulatory_network by Borelli on 2008-08-16 09:57:10 as along with 22 people and 1 group balabu stharward dbikard dannya222 abhishek_tiwari adamnellis sjayanthi jasonpark1 cjryan ClaireFB mattions rklancer dgront sharatjv mhucka margaritis Grobi msuarezdiez tvdbulck austin jjray dagmar BP205
	Gene regulatory network reconstruction by bayesian integration of prior knowledge and/or different experimental conditions. [My Copy] Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 543-572. by A. V. Werhli, D. Husmeier posted to bayesian bayesian_network regulatory_network by Borelli on 2008-08-10 10:50:35 as along with 1 person guhjy
	Computational methods for transcriptional regulation. [My Copy] Curr Opin Genet Dev, Vol. 15, No. 2. (April 2005), pp. 214-221. by E. D. Siggia posted to networks regulatory_network by Borelli on 2008-07-14 15:23:06 as along with 7 people and 2 groups barry dpollard koller bertelsen nklee balicea jjray Bioinformatics EisenLab
	Biological networks [My Copy] Current Opinion in Structural Biology, Vol. 13, No. 2. (April 2003), pp. 193-202. by E. Alm posted to biology networks regulatory_network review by Borelli on 2008-07-14 15:03:54 as along with 3 people kentz sergiun cmmorel
	The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana [My Copy] PLoS Genetics, Vol. 3, No. 2. (1 February 2007), e11. by Dirk Walther, Roman Brunnemann, Joachim Selbig posted to arabidopsis athaliana regulatory_network by Borelli on 2008-07-08 14:39:06 as along with 7 people and 2 groups mingzhi JustinCrocker indigoviolet kengg saru braingrind byy EisenLab Plantandetc
	DiRE: identifying distant regulatory elements of co-expressed genes [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_2. (1 July 2008), pp. W133-139. by Valer Gotea, Ivan Ovcharenko posted to regulatory_network by Borelli on 2008-07-08 09:11:01 as along with 4 people tonamswish wowalz heliopais idonaldson
	Transcriptional Regulatory Networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804. by Tong I. Lee, Nicola J. Rinaldi, Francois Robert, et al.Duncan T. Odom, Ziv Bar-Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher T. Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, D. Benjamin Gordon, Bing Ren, John J. Wyrick, Jean-Bosco Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young posted to chip network regulatory_network by Borelli on 2008-07-07 15:58:32 as along with 32 people and 2 groups viren4388 mjoach kmdaily kinop junehlee lillo80 camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike brant kristallreiner Takayuki dquest siebert dbk-lab TNT
	Cell biology: Networks, regulation, pathways [My Copy] (28 Dec 2007) by Gasper Tkacik, William Bialek posted to networks pathway regulatory_network review by Borelli on 2008-07-07 11:14:40 as
	Network motifs in the transcriptional regulation network of Escherichia coli. [My Copy] Nature genetics, Vol. 31, No. 1. (22 May 2002), pp. 64-68. by Shai S. Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon posted to networks regulatory_network yeast by Borelli on 2008-07-06 19:06:43 as along with 19 people and 1 group antonkratz vtraag sergiun mtagaya kaarsinogen cswinburne jstajic jjray ssb nickluscombe gurkanbebek jtaylor jayster4 karfunkel blobbybirdman zibuyu maralena hannahrajasingh ethkim EBI-regulation
	Topological and causal structure of the yeast transcriptional regulatory network [My Copy] Nat Genet, Vol. 31, No. 1. (May 2002), pp. 60-63. by Nabil Guelzim, Samuele Bottani, Paul Bourgine, Francois Kepes posted to protein regulatory_network small_world yeast by Borelli on 2008-07-06 19:03:52 as along with 5 people antonkratz kentz kaarsinogen karfunkel Takayuki

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