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Low Cost, Scalable Proteomics Data Analysis Using Amazon’s Cloud Computing Services and Open Source Search Algorithms

by: Brian D. Halligan, Joey F. Geiger, Andrew K. Vallejos, Andrew S. Greene, Simon N. Twigger
Journal of Proteome Research, Vol. 8, No. 6. (5 June 2009), pp. 3148-3153, doi:10.1021/pr800970z  Key: citeulike:4298633

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Abstract

PMID: 19358578 We describe a system combining cloud computing and open source software that allows individual laboratories or users to create scalable virtual proteomics analysis clusters and have large-scale computational resources at their disposal at a very low cost without the investment in computational hardware or software licensing fees. We provide detailed step-by-step instructions on using these virtual proteomics analysis clusters at the Medical College of Wisconsin Proteomics Center Web site ( http://proteomics.mcw.edu/vipdac ).


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