Diego_Prada's Pande:VS [15 articles] Export

Recent papers posted to Diego_Prada's library by the author Pande:VS. You can also see everyone's Pande:VS.

	Absolute comparison of simulated and experimental protein-folding dynamics [My Copy] Nature, Vol. 420, No. 6911. (20 October 2002), pp. 102-106. by Christopher D. Snow, Houbi Nguyen, Vijay S. Pande, Martin Gruebele posted to protein_folding md_history by Diego_Prada on 2009-11-25 15:37:49 as along with 3 people doktornoe fjc1 samjlord
	Progress and challenges in the automated construction of Markov state models for full protein systems [My Copy] The Journal of Chemical Physics, Vol. 131, No. 12. (2009), 124101. by Gregory R. Bowman, Kyle A. Beauchamp, George Boxer, Vijay S. Pande posted to sampling markov_state_models by Diego_Prada on 2009-11-19 19:52:24 as along with 1 person dlimmer
	Using generalized ensemble simulations and Markov state models to identify conformational states [My Copy] Methods, Vol. 49, No. 2. (3 October 2009), pp. 197-201. by Gregory R. Bowman, Xuhui Huang, Vijay S. Pande posted to markov_state_models free-energy by Diego_Prada on 2009-11-19 18:06:04 as along with 1 person apaydin
	Rapid equilibrium sampling initiated from nonequilibrium data [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 47. (24 November 2009), pp. 19765-19769. by Xuhui Huang, Gregory R. Bowman, Sergio Bacallado, Vijay S. Pande posted to nonequilibrium markov_state_models markov free-energy by Diego_Prada on 2009-10-05 16:42:54 as along with 2 people doktornoe apaydin
	HOW WELL CAN SIMULATION PREDICT PROTEIN FOLDING KINETICS AND THERMODYNAMICS? [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 34, No. 1. (29 October 2005), pp. 43-69. by Christopher D. Snow, Eric J. Sorin, Young M. Rhee, Vijay S. Pande posted to md methods protein_folding statistical_mechanics stochastic_processes by Diego_Prada on 2009-04-30 12:01:14 as along with 10 people krapnik amphibina flbarroso doktornoe dgront blackbart allmensch saunders evanse toerst
	Foldamer dynamics expressed via Markov state models. II. State space decomposition [My Copy] The Journal of Chemical Physics, Vol. 123, No. 11. (2005) by Sidney P. Elmer, Sanghyun Park, Vijay S. Pande posted to free-energy markov short-peptides stochastic_processes by Diego_Prada on 2009-03-03 12:09:47 as
	Foldamer dynamics expressed via Markov state models. I. Explicit solvent molecular-dynamics simulations in acetonitrile, chloroform, methanol, and water [My Copy] The Journal of Chemical Physics, Vol. 123, No. 11. (2005) by Sidney P. Elmer, Sanghyun Park, Vijay S. Pande posted to free-energy markov short-peptides stochastic_processes by Diego_Prada on 2009-03-03 12:06:39 as along with 1 person toerst
	Validation of Markov state models using Shannon's entropy [My Copy] The Journal of Chemical Physics, Vol. 124, No. 5. (2006) by Sanghyun Park, Vijay S. Pande posted to chapt_cmn entropy markov plos stochastic_processes by Diego_Prada on 2009-02-19 18:23:05 as along with 1 person toerst
	Unusual compactness of a polyproline type II structure. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 33. (16 August 2005), pp. 11698-11703. by B. Zagrovic, J. Lipfert, E. J. Sorin, et al.I. S. Millett, W. F. van Gunsteren, S. Doniach, V. S. Pande posted to experimental force-fields hexapeptide by Diego_Prada on 2008-12-16 12:51:37 as along with 1 person allmensch
	Molecular dynamics simulations of unfolding and refolding of a β-hairpin fragment of protein G [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 16. (1999), pp. 9062-9067. by Vijay S. Pande, Daniel S. Rokhsar posted to short-peptides by Diego_Prada on 2008-11-29 18:36:58 as
	On the transition coordinate for protein folding [My Copy] The Journal of Chemical Physics, Vol. 108, No. 1. (1998), pp. 334-350. by Rose Du, Vijay S. Pande, Alexander Yu, Toyoichi Tanaka, Eugene S. Shakhnovich posted to free-energy hp_model protein_folding by Diego_Prada on 2008-08-19 22:33:06 as along with 1 person doktornoe
	Heteropolymer freezing and design: Towards physical models of protein folding [My Copy] Reviews of Modern Physics, Vol. 72, No. 1. (1 January 2000), 259. by Vijay S. Pande, Alexander Y. Grosberg, Toyoichi Tanaka posted to free-energy hexapeptide hp_model protein_folding proteins review by Diego_Prada on 2008-08-19 22:25:55 as
	Pathways for protein folding: is a new view needed? [My Copy] Current Opinion in Structural Biology, Vol. 8, No. 1. (February 1998), pp. 68-79. by Vijay S. Pande, Alexander Y. Grosberg, Toyoichi Tanaka, Daniel S. Rokhsar posted to hp_model by Diego_Prada on 2008-08-12 13:30:09 as along with 2 people prinz doktornoe
	Calculation of the distribution of eigenvalues and eigenvectors in Markovian state models for molecular dynamics [My Copy] The Journal of Chemical Physics, Vol. 126, No. 24. (2007) by Nina S. Hinrichs, Vijay S. Pande posted to markov protein_dynamics by Diego_Prada on 2008-03-30 16:17:53 as
	Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics [My Copy] The Journal of Chemical Physics, Vol. 126, No. 15. (21 April 2007), 155101. by John D. Chodera, Nina Singhal, Vijay S. Pande, Ken A. Dill, William C. Swope posted to chapt_cmn markov plos protein_dynamics by Diego_Prada on 2008-03-30 16:13:45 as along with 2 people ruvido allmensch

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free-energy	114
chapt_cmn	72
networks	66
short-peptides	63
hexapeptide	48
plos	47
protein_folding	46
md	41
communities	38
markov	35
stochastic_processes	34
cmn	34
gnm	32
protein_dynamics	31
pca	30
amino	28
methods	28
dialanine	27
md_history	27
amyloids	27
transition_path	26
articulo	21
complex_systems	21
aux	19
coarse-grained	18
beta-hairpin	16
hp_model	16
dpca	15
proteins	15
transition_states	14
reaction_paths	13
water	13
force-fields	13
chapt_amino	12
statistical_mechanics	12
experimental	8
pes_based	8
first_passage	8
problems_fel_dof	8
clustering	8
markov_state_models	7
glass_transition	7
mutual-information	6
secondary_structure	6
rmsd	6
active_site	6
kramers	6
struct_decorr	6
sampling	6
energy_landscape	6
hot	5
review	5
glycine	5
collective_motions	5
langevin	5
mios	5
out_of_equilibrium	5
percolation	4
mc	4
entropy	4
kinetic_models	4
allostery	4
qha	4
rol_nodes	3
work_theorem	3
dihedral	3
alanine	3
probability_distributions	2
information	2
fca	2
conformational_entropy	2
ala5	2
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leas_action	2
bayesian_analysis	2
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go	2
temperature_dependence	2
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t_dependence	2
wavelets	2
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fre	1
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pendiente	1
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relaxation_processes	1
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opls	1
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short_time_simus	1
aggregation	1
latex	1
nonequilibrium	1
mpi	1
energy_landscapes	1
nmr	1
information_theory	1
hurst_exponent	1

Diego_Prada's Pande:VS [15 articles] Export

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