CiteULike: Diego_Prada's Zuckerman:DM [5 articles]

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	Absolute free energies estimated by combining pre-calculated molecular fragment libraries [My Copy] (30 Jan 2009) by Xin Zhang, Artem B. Mamonov, Daniel M. Zuckerman posted to free_energy coarse-grained dialanine short-peptides by Diego_Prada on 2009-03-04 12:12:11 as
	On the Structural Convergence of Biomolecular Simulations by Determination of the Effective Sample Size [My Copy] J. Phys. Chem. B (13 October 2007) by E. Lyman, D. M. Zuckerman posted to chapt_cmn plos struct_decorr by Diego_Prada on 2008-08-15 17:35:32 as along with 1 person and 1 group sobolevnrm baker-group
	Annealed importance sampling of dileucine peptide [My Copy] (3 Apr 2007) by Edward Lyman, Daniel M. Zuckerman posted to coarse-grained protein_dynamics struct_decorr by Diego_Prada on 2008-04-21 10:15:40 as
	Demonstrated convergence of the equilibrium ensemble for a fast united-residue protein model [My Copy] (24 Mar 2007) by Marty F. Ytreberg, Svetlana, Daniel M. Zuckerman posted to coarse-grained protein_dynamics struct_decorr by Diego_Prada on 2008-04-21 10:13:08 as
	The structural de-correlation time: A robust statistical measure of convergence of biomolecular simulations [My Copy] (18 Feb 2007) by Edward Lyman, Daniel M. Zuckerman posted to protein_dynamics proteins struct_decorr by Diego_Prada on 2008-02-18 17:18:27 as

free_energy	117
chapt_cmn	72
networks	68
short-peptides	63
hexapeptide	48
plos	47
protein_folding	46
md	41
communities	38
cmn	35
markov	35
stochastic_processes	34
amino	34
gnm	32
protein_dynamics	31
pca	30
methods	28
transition_path	28
md_history	27
dialanine	27
amyloids	27
articulo	21
complex_systems	21
aux	21
coarse-grained	18
hp_model	16
beta-hairpin	16
transition_states	15
dpca	15
proteins	15
reaction_paths	14
water	14
force-fields	13
statistical_mechanics	12
chapt_amino	12
langevin	10
pes_based	10
problems_fel_dof	9
energy_landscape	9
glass_transition	8
first_passage	8
experimental	8
clustering	8
funnels	7
markov_state_models	7
kramers	6
struct_decorr	6
secondary_structure	6
rmsd	6
sampling	6
mutual-information	6
active_site	6
review	5
glycine	5
collective_motions	5
mios	5
transition_state_theory	5
hot	5
out_of_equilibrium	5
entropy	4
mc	4
qha	4
percolation	4
kinetic_models	4
allostery	4
rol_nodes	3
work_theorem	3
dihedral	3
alanine	3
leas_action	2
fca	2
ala5	2
falta	2
information	2
bayesian_analysis	2
conformational_entropy	2
t_dependence	2
temperature_dependence	2
probability_distributions	2
wavelets	2
non_markovian	2
energy_landscapes	2
statistics	2
maximal_flow	2
irreversibility	2
go	2
coarse-grained_potentials	1
statistical_models	1
fibril_formation	1
protein_flexibility	1
nonequilibrium	1
mpi	1
fre	1
md_vs_experiments	1
hurst_exponent	1
enkaphalin	1
relaxation_processes	1
lj_clusters	1
nmr	1
collective_variable	1
opls	1
latex	1
flagellum	1
discrete_breathers	1
information_theory	1
short_time_simus	1
pendiente	1
chain_interactions	1
aggregation	1

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