Diego_Prada's amino [28 articles] Export

Recent papers added to Diego_Prada's library classified by the tag amino. You can also see everyone's amino.

	Cis-Trans Imide Isomerization of the Proline Dipeptide [My Copy] Journal of the American Chemical Society, Vol. 116, No. 26. (1 December 1994), pp. 11931-11937. by Stefan Fischer, Roland L. Dunbrack, Martin Karplus posted to transition_path problems_fel_dof amino by Diego_Prada on 2009-11-23 17:09:55 as
	Role of backbone solvation and electrostatics in generating preferred peptide backbone conformations: Distributions of phi [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 10. (13 May 2003), pp. 5742-5747. by Franc Avbelj, Robert L. Baldwin posted to short-peptides secondary_structure amino by Diego_Prada on 2009-11-18 16:36:07 as
	Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms1 [My Copy] Journal of Molecular Biology, Vol. 285, No. 4. (29 January 1999), pp. 1711-1733. by Word, Simon C. Lovell, Thomas H. Labean, et al.Hope C. Taylor, Michael E. Zalis, Brent K. Presley, Jane S. Richardson, David C. Richardson posted to chapt_amino amino by Diego_Prada on 2009-08-12 12:21:51 as along with 4 people and 5 groups aqeel dgront barry joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	A survey of left-handed polyproline II helices [My Copy] Protein Science, Vol. 8, No. 3. (1999), pp. 587-595. by Benjamin J. Stapley, Trevor P. Creamer posted to chapt_amino amino by Diego_Prada on 2009-08-07 20:58:59 as
	In Vivo Chemical Modification of Proteins (Post-Translational Modification) [My Copy] Annual Review of Biochemistry, Vol. 50, No. 1. (1981), pp. 783-814. by F. Wold posted to amino by Diego_Prada on 2009-08-07 17:51:47 as
	Posttranslational covalent modification of proteins [My Copy] Science, Vol. 198, No. 4320. (2 December 1977), pp. 890-896. by R. Uy, F. Wold posted to amino by Diego_Prada on 2009-08-07 17:47:47 as
	Conformation of Polypeptides and Proteins [My Copy] In Advances in Protein Chemistry Volume 23, Vol. 23 (1968), pp. 283-437. by G. N. Ramachandran, V. Sasisekharan posted to chapt_amino amino by Diego_Prada on 2009-08-07 12:47:38 as
	Stereochemical quality of protein structure coordinates [My Copy] Proteins: Structure, Function, and Genetics, Vol. 12, No. 4. (3 February 1992), pp. 345-364. by Anne L. Morris, Malcolm W. Macarthur, E. Gail Hutchinson, Janet M. Thornton posted to chapt_amino amino by Diego_Prada on 2009-08-07 12:32:21 as along with 2 people aqeel andreasauerwein
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted to chapt_amino amino proteins by Diego_Prada on 2009-08-06 21:38:47 as along with 45 people and 5 groups trishul krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac tji higueruelo boris_aguilar sebk timg References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp beta
	Thermodynamic functions of conformational changes: conformational network of glycine diamide folding, entropy lowering, and informational accumulation. [My Copy] The journal of physical chemistry. A, Vol. 110, No. 49. (14 December 2006), pp. 13325-13331. by Szilard N. Fejer, Imre G. Csizmadia, Bela Viskolcz posted to amino cmn glycine by Diego_Prada on 2009-08-04 11:17:45 as
	Stereochemical Criteria for Polypeptide and Protein Chain ConformationsII. Allowed Conformations for a Pair of Peptide Units [My Copy] Biophysical Journal, Vol. 5, No. 6. (1 November 1965), pp. 909-933. by C. Ramakrishnan, G. N. Ramachandran posted to amino by Diego_Prada on 2009-07-29 17:20:12 as along with 2 people allmensch aqeel
	Comparison of a QM/MM force field and molecular mechanics force fields in simulations of alanine and glycine ldquodipeptidesrdquo (Ace-Ala-Nme and Ace-Gly-Nme) in water in relation to the problem of modeling the unfolded peptide backbone in solution [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 50, No. 3. (15 February 2003), pp. 451-463. by Hao Hu, Marcus Elstner, Jan Hermans posted to amino dialanine force-fields by Diego_Prada on 2009-07-26 16:12:40 as along with 3 people flbarroso paddydu allmensch
	Coulombic interactions between partially charged main-chain atoms not hydrogen-bonded to each other influence the conformations of α-helices and antiparallel β-sheet. A new method for analysing the forces between hydrogen bonding groups in proteins includes all the Coulombic interactions [My Copy] Journal of Molecular Biology, Vol. 248, No. 2. (1995), pp. 361-373. by P. Maccallum, R. Poet, E. Jamesmilnerwhite posted to chapt_amino amino by Diego_Prada on 2009-07-20 17:35:08 as
	Coulombic attractions between partially chargedmain-chain atoms stabilise the right-handed twist found in most β-strands [My Copy] Journal of Molecular Biology, Vol. 248, No. 2. (1995), pp. 374-384. by P. Maccallum, R. Poet, E. Jamesmilnerwhite posted to amino by Diego_Prada on 2009-07-20 17:31:34 as
	The anatomy and taxonomy of protein structure. [My Copy] Advances in protein chemistry, Vol. 34 (1981), pp. 167-339. by J. S. Richardson posted to chapt_amino amino protein_folding proteins by Diego_Prada on 2009-07-18 18:21:51 as along with 1 person nikkiwithers
	Revisiting the Ramachandran plot: hard-sphere repulsion, electrostatics, and H-bonding in the alpha-helix. [My Copy] Protein Sci, Vol. 12, No. 11. (November 2003), pp. 2508-2522. by B. K. Ho, A. Thomas, R. Brasseur posted to chapt_amino amino by Diego_Prada on 2009-07-18 18:06:17 as along with 3 people and 1 group aqeel allmensch Einat structural_bioinformatics
	Phi/Psi-chology: Ramachandran revisited [My Copy] Structure, Vol. 4, No. 12. (15 December 1996), pp. 1395-1400. by G. Kleywegt, T. Jones posted to chapt_amino amino glycine by Diego_Prada on 2009-07-08 22:34:43 as
	Structure validation by Cα geometry: Φ,Ψ and Cβ deviation [My Copy] Proteins: Structure, Function, and Genetics, Vol. 50, No. 3. (15 February 2003), pp. 437-450. by Simon C. Lovell, Ian W. Davis, W. Bryan Arendall, et al.Paul I. W. de Bakker, J. Michael Word, Michael G. Prisant, Jane S. Richardson, David C. Richardson posted to chapt_amino amino glycine by Diego_Prada on 2009-07-08 22:26:32 as along with 9 people and 2 groups bmduggan aqeel jwm robert dgront xiaobeizhao martainn mijam pavanghatty Radiation_Damage Stressosome
	Abbreviations and Symbols for the Description of the Conformation of Polypeptide Chains [My Copy] Pure Appl. Chem, Vol. 40 (1974), pp. 291-308. by IUPAC posted to amino by Diego_Prada on 2009-07-08 21:12:47 as
	Nomenclature and Symbolism for Amino Acids and Peptides [My Copy] Pure Appl. Chem, Vol. 56, No. 5. (1984), pp. 595-624. by IUPAC posted to amino by Diego_Prada on 2009-07-08 21:08:21 as
	Conformation of amino acid side-chains in proteins. [My Copy] Journal of molecular biology, Vol. 125, No. 3. (5 November 1978), pp. 357-386. by J. Janin, S. Wodak, M. Levitt, B. Maigret posted to amino by Diego_Prada on 2009-07-08 20:34:20 as
	Pseudo-structures for the 20 common amino acids for use in studies of protein conformations by measurements of intramolecular proton-proton distance constraints with nuclear magnetic resonance. [My Copy] Journal of molecular biology, Vol. 169, No. 4. (5 October 1983), pp. 949-961. by K. Wüthrich, M. Billeter, W. Braun posted to amino by Diego_Prada on 2009-07-08 20:32:52 as
	Force Field Modeling of Amino Acid Conformational Energies [My Copy] Journal of Chemical Theory and Computation, Vol. 3, No. 5. (1 September 2007), pp. 1774-1788. by Jakub Kaminsky, Frank Jensen posted to amino by Diego_Prada on 2009-07-08 20:26:03 as along with 3 people kubikuk paulschlesinger middledomain
	Conformations of amino acids in proteins [My Copy] Acta Crystallographica Section D, Vol. 58, No. 5. (May 2002), pp. 768-776. by Sven Hovmöller, Tuping Zhou, Tomas Ohlson posted to chapt_amino amino by Diego_Prada on 2009-07-08 20:20:50 as along with 1 person middledomain
	Free energy surfaces from an extended harmonic superposition approach and kinetics for alanine dipeptide [My Copy] Chemical Physics Letters, Vol. 466, No. 4-6. (04 December 2008), pp. 105-115. by Birgit Strodel, David J. Wales posted to amino articulo coarse-grained dialanine free-energy hexapeptide statistical_mechanics by Diego_Prada on 2009-03-07 12:18:52 as
	The Ramachandran plots of glycine and pre-proline [My Copy] BMC Structural Biology, Vol. 5, No. 1. (2005), 14. by Bosco Ho, Robert Brasseur posted to amino glycine by Diego_Prada on 2009-01-03 20:13:21 as along with 2 people dsekaran dgront
	A comparison of the CHARMM, AMBER and ECEPP potentials for peptides. II. Phi-psi maps for N-acetyl alanine N'-methyl amide: comparisons, contrasts and simple experimental tests. [My Copy] Journal of biomolecular structure & dynamics, Vol. 7, No. 3. (December 1989), pp. 421-453. by I. K. Roterman, M. H. Lambert, K. D. Gibson, H. A. Scheraga posted to chapt_cmn alanine amino dialanine plos by Diego_Prada on 2008-08-03 18:21:35 as
	Stereochemistry of polypeptide chain configurations. [My Copy] Journal of molecular biology, Vol. 7 (July 1963), pp. 95-99. by G. N. Ramachandran, C. Ramakrishnan, V. Sasisekharan posted to chapt_amino amino dialanine proteins by Diego_Prada on 2008-08-01 20:33:15 as along with 7 people stharward kumar_physics yangjustinc reyez cen4ik jwm wouterboomsma

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free-energy	96
chapt_cmn	69
networks	66
short-peptides	63
hexapeptide	48
plos	47
md	41
communities	38
markov	35
stochastic_processes	34
protein_folding	33
gnm	32
cmn	31
protein_dynamics	31
pca	30
amino	28
amyloids	27
dialanine	27
md_history	27
methods	27
transition_path	26
articulo	21
complex_systems	21
coarse-grained	18
beta-hairpin	16
hp_model	16
dpca	15
proteins	15
force-fields	13
reaction_paths	13
water	13
chapt_amino	12
statistical_mechanics	12
transition_states	10
clustering	8
experimental	8
first_passage	8
markov_state_models	7
problems_fel_dof	7
active_site	6
glass_transition	6
mutual-information	6
rmsd	6
sampling	6
secondary_structure	6
struct_decorr	6
collective_motions	5
glycine	5
hot	5
kramers	5
langevin	5
mios	5
out_of_equilibrium	5
review	5
allostery	4
entropy	4
kinetic_models	4
mc	4
percolation	4
qha	4
alanine	3
dihedral	3
energy_landscape	3
rol_nodes	3
work_theorem	3
ala5	2
bayesian_analysis	2
conformational_entropy	2
fca	2
funnels	2
go	2
information	2
irreversibility	2
lanvegin	2
leas_action	2
non_markovian	2
probability_distributions	2
statistics	2
wavelets	2
aggregation	1
chain_interactions	1
discrete_breathers	1
enkaphalin	1
fibril_formation	1
flagellum	1
fre	1
hurst_exponent	1
information_theory	1
latex	1
mpi	1
nmr	1
nonequilibrium	1
opls	1
pendiente	1
protein_flexibility	1
relaxation_processes	1
statistical_models	1
t_dependence	1
temperature_dependence	1

Diego_Prada's amino [28 articles] Export

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