Diego_Prada's articulo [21 articles] Export

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	Generalized correlation for biomolecular dynamics [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 62, No. 4. (2006), pp. 1053-1061. by Oliver F. Lange, Helmut Grubmüller posted to articulo fca mutual-information by Diego_Prada on 2009-03-23 19:08:57 as
	Essential dynamics of proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 17, No. 4. (December 1993), pp. 412-425. by Andrea Amadei, Antonius B. M. Linssen, Herman J. C. Berendsen posted to articulo pca by Diego_Prada on 2009-03-23 18:50:50 as along with 10 people and 1 group kazemi baaden aqeel yongzhao ttjoseph ffranca allmensch carlescorbi dimka nigham TSRI_MGL
	Principal coordinate analysis on a protein model [My Copy] The Journal of Chemical Physics, Vol. 110, No. 21. (1999), pp. 10606-10622. by Nuran Elmaci, Stephen R. Berry posted to articulo pca by Diego_Prada on 2009-03-23 17:45:21 as along with 1 person scampos
	A comparison of techniques for calculating protein essential dynamics [My Copy] Journal of Computational Chemistry, Vol. 18, No. 2. (1997), pp. 169-181. by D. M. F. Van Aalten, Bert L. de Groot, J. B. C. Findlay, H. J. C. Berendsen, A. Amadei posted to articulo dpca pca by Diego_Prada on 2009-03-23 17:37:59 as
	2D Entropy of Discrete Molecular Ensembles [My Copy] J. Chem. Theory Comput., Vol. 2, No. 1. (10 January 2006), pp. 18-24. by J. Wang, R. Bruschweiler posted to articulo dpca by Diego_Prada on 2009-03-23 16:31:59 as along with 1 person dmobley
	Circular effects in representations of an RNA nucleotides data set in relation with principal components analysis [My Copy] Chemometrics and Intelligent Laboratory Systems, Vol. 56, No. 2. (30 May 2001), pp. 61-71. by T. H. Reijmers, R. Wehrens, L. M. C. Buydens posted to articulo dpca by Diego_Prada on 2009-03-23 16:28:55 as
	Efficient evaluation of sampling quality of molecular dynamics simulations by clustering of dihedral torsion angles and Sammon mapping [My Copy] Journal of Computational Chemistry, Vol. 30, No. 3. (2009), pp. 479-492. by Stephan Frickenhaus, Srinivasaraghavan Kannan, Martin Zacharias posted to articulo dpca by Diego_Prada on 2009-03-21 17:55:14 as along with 3 people and 1 group scampos sobolevnrm agrossfield baker-group
	Diffusive reaction dynamics on invariant free energy profiles [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 37. (16 September 2008), pp. 13841-13846. by Sergei V. Krivov, Martin Karplus posted to articulo free-energy by Diego_Prada on 2009-03-21 17:44:16 as
	Conformational states and folding pathways of peptides revealed by principal-independent component analyses [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 3. (2007), pp. 579-592. by Phuong H. Nguyen posted to articulo hexapeptide pca by Diego_Prada on 2009-03-21 17:37:12 as
	Full correlation analysis of conformational protein dynamics [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 70, No. 9999. (2007), pp. 1294-1312. by Oliver F. Lange, Helmut Grubmüller posted to articulo md mutual-information pca by Diego_Prada on 2009-03-21 17:32:53 as along with 7 people and 1 group anuragsethi jeargle softsimu barry choonpeng sobolevnrm LamBras baker-group
	Algorithmic dimensionality reduction for molecular structure analysis [My Copy] The Journal of Chemical Physics, Vol. 129, No. 6. (2008), 064118. by Michael W. Brown, Shawn Martin, Sara N. Pollock, Evangelos A. Coutsias, Jean P. Watson posted to articulo free-energy pca by Diego_Prada on 2009-03-21 17:16:01 as
	Principal component analysis for protein folding dynamics [My Copy] Journal of Molecular Biology (15 October 2008) by G. Maisuradze, A. Liwo, H. Scheraga posted to articulo dpca md pca by Diego_Prada on 2009-03-21 17:04:23 as along with 4 people and 1 group scampos phoenixzxl barry paulschlesinger structural_bioinformatics
	Comment on: "Energy landscape of a small peptide revealed by dihedral angle principal component analysis" [My Copy] Proteins (2 February 2006) by Konrad Hinsen posted to articulo dpca pca by Diego_Prada on 2009-03-21 16:48:59 as along with 1 person kentsis
	Reply to the comment on ldquoEnergy landscape of a small peptide revealed by dihedral angle principal component analysisrdquo [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 64, No. 3. (2006), pp. 798-799. by Yuguang Mu, Phuong Nguyen, Gerhard Stock posted to articulo dpca pca by Diego_Prada on 2009-03-21 16:45:56 as
	Free energy surfaces from an extended harmonic superposition approach and kinetics for alanine dipeptide [My Copy] Chemical Physics Letters, Vol. 466, No. 4-6. (04 December 2008), pp. 105-115. by Birgit Strodel, David J. Wales posted to amino articulo coarse-grained dialanine free-energy hexapeptide statistical_mechanics by Diego_Prada on 2009-03-07 12:18:52 as
	Free energy landscape of a biomolecule in dihedral principal component space: sampling convergence and correspondence between structures and minima. [My Copy] Proteins, Vol. 67, No. 3. (15 May 2007), pp. 569-578. by G. G. Maisuradze, D. M. Leitner posted to articulo pca short-peptides by Diego_Prada on 2008-12-19 11:25:15 as along with 2 people scampos onufriev
	Construction of the free energy landscape of biomolecules via dihedral angle principal component analysis [My Copy] The Journal of Chemical Physics, Vol. 128, No. 24. (2008) by Alexandros Altis, Moritz Otten, Phuong H. Nguyen, Rainer Hegger, Gerhard Stock posted to articulo dpca free-energy hexapeptide pca by Diego_Prada on 2008-12-16 11:16:42 as along with 2 people scampos agrossfield
	Using quaternions to calculate RMSD. [My Copy] J Comput Chem, Vol. 25, No. 15. (30 November 2004), pp. 1849-1857. by E. A. Coutsias, C. Seok, K. A. Dill posted to articulo methods rmsd by Diego_Prada on 2008-09-26 18:09:36 as along with 6 people eskay BragilMassoud apaydin nachtalp dgront rabio
	Energy landscape of a small peptide revealed by dihedral angle principal component analysis [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 58, No. 1. (2005), pp. 45-52. by Yuguang Mu, Phuong H. Nguyen, Gerhard Stock posted to articulo dpca hexapeptide md pca by Diego_Prada on 2008-09-24 12:25:09 as
	Dihedral angle principal component analysis of molecular dynamics simulations [My Copy] The Journal of Chemical Physics, Vol. 126, No. 24. (2007) by Alexandros Altis, Phuong H. Nguyen, Rainer Hegger, Gerhard Stock posted to articulo dpca md pca protein_dynamics by Diego_Prada on 2008-09-24 11:39:38 as along with 4 people and 1 group scampos barry ruvido nh structural_bioinformatics
	Quantitative visualization of a macromolecular potential energy "funnel" [My Copy] Journal of Molecular Structure: THEOCHEM In World Congress of Theoretically Oriented Chemists, Vol. 398-399 (30 June 1997), pp. 507-516. by Oren M. Becker posted to articulo free-energy hexapeptide by Diego_Prada on 2008-08-19 18:00:05 as

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free-energy	96
chapt_cmn	69
networks	66
short-peptides	63
hexapeptide	48
plos	47
md	41
communities	38
markov	35
stochastic_processes	34
protein_folding	33
gnm	32
cmn	31
protein_dynamics	31
pca	30
amino	28
amyloids	27
dialanine	27
md_history	27
methods	27
transition_path	26
articulo	21
complex_systems	21
coarse-grained	18
beta-hairpin	16
hp_model	16
dpca	15
proteins	15
force-fields	13
reaction_paths	13
water	13
chapt_amino	12
statistical_mechanics	12
transition_states	10
clustering	8
experimental	8
first_passage	8
markov_state_models	7
problems_fel_dof	7
active_site	6
glass_transition	6
mutual-information	6
rmsd	6
sampling	6
secondary_structure	6
struct_decorr	6
collective_motions	5
glycine	5
hot	5
kramers	5
langevin	5
mios	5
out_of_equilibrium	5
review	5
allostery	4
entropy	4
kinetic_models	4
mc	4
percolation	4
qha	4
alanine	3
dihedral	3
energy_landscape	3
rol_nodes	3
work_theorem	3
ala5	2
bayesian_analysis	2
conformational_entropy	2
fca	2
funnels	2
go	2
information	2
irreversibility	2
lanvegin	2
leas_action	2
non_markovian	2
probability_distributions	2
statistics	2
wavelets	2
aggregation	1
chain_interactions	1
discrete_breathers	1
enkaphalin	1
fibril_formation	1
flagellum	1
fre	1
hurst_exponent	1
information_theory	1
latex	1
mpi	1
nmr	1
nonequilibrium	1
opls	1
pendiente	1
protein_flexibility	1
relaxation_processes	1
statistical_models	1
t_dependence	1
temperature_dependence	1

Diego_Prada's articulo [21 articles] Export

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