Diego_Prada's coarse-grained [18 articles] Export

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	Protein folding on rugged energy landscapes: Conformational diffusion on fractal networks [My Copy] (24 Jun 2009) by Gregg Lois, J. Blawzdziewicz, Corey S. O'Hern posted to cmn coarse-grained complex_systems first_passage free-energy hp_model networks protein_dynamics protein_folding proteins reaction_paths transition_path by Diego_Prada on 2009-06-25 16:27:33 as
	Extracting macroscopic stochastic dynamics: Model problems [My Copy] Communications on Pure and Applied Mathematics, Vol. 56, No. 2. (2003), pp. 234-269. by Wilhelm Huisinga, Christof Schütte, Andrew M. Stuart posted to stochastic_processes non_markovian markov coarse-grained chapt_cmn by Diego_Prada on 2009-03-09 17:53:37 as
	Free energy surfaces from an extended harmonic superposition approach and kinetics for alanine dipeptide [My Copy] Chemical Physics Letters, Vol. 466, No. 4-6. (04 December 2008), pp. 105-115. by Birgit Strodel, David J. Wales posted to amino articulo coarse-grained dialanine free-energy hexapeptide statistical_mechanics by Diego_Prada on 2009-03-07 12:18:52 as
	Absolute free energies estimated by combining pre-calculated molecular fragment libraries [My Copy] (30 Jan 2009) by Xin Zhang, Artem B. Mamonov, Daniel M. Zuckerman posted to coarse-grained dialanine free-energy short-peptides by Diego_Prada on 2009-03-04 12:12:11 as
	Energy landscape of a model protein [My Copy] The Journal of Chemical Physics, Vol. 111, No. 14. (1999), pp. 6610-6616. by Mark A. Miller, David J. Wales posted to coarse-grained hp_model by Diego_Prada on 2008-08-20 10:44:26 as
	Coarse molecular dynamics of a peptide fragment: Free energy, kinetics, and long-time dynamics computations [My Copy] J. Chem. Phys., Vol. 118 (June 2003), pp. 10762-10773. by G. Hummer, I. G. Kevrekidis posted to chapt_cmn coarse-grained dialanine md plos by Diego_Prada on 2008-08-01 19:40:41 as
	Annealed importance sampling of dileucine peptide [My Copy] (3 Apr 2007) by Edward Lyman, Daniel M. Zuckerman posted to coarse-grained protein_dynamics struct_decorr by Diego_Prada on 2008-04-21 10:15:40 as
	Demonstrated convergence of the equilibrium ensemble for a fast united-residue protein model [My Copy] (24 Mar 2007) by Marty F. Ytreberg, Svetlana, Daniel M. Zuckerman posted to coarse-grained protein_dynamics struct_decorr by Diego_Prada on 2008-04-21 10:13:08 as
	Free energy landscapes of model peptides and proteins [My Copy] The Journal of Chemical Physics, Vol. 118, No. 8. (2003), pp. 3891-3897. by David A. Evans, David J. Wales posted to coarse-grained free-energy proteins by Diego_Prada on 2008-04-11 20:05:03 as
	Design of amino acid sequences to fold into C[sub alpha]-model proteins [My Copy] The Journal of Chemical Physics, Vol. 123, No. 5. (2005) by A. Amatori, G. Tiana, L. Sutto, Ferkinghoff J. Borg, A. Trovato, R. A. Broglia posted to coarse-grained by Diego_Prada on 2008-02-18 18:48:21 as
	Important fluctuation dynamics of large protein structures are preserved upon coarse-grained renormalization [My Copy] International Journal of Quantum Chemistry, Vol. 90, No. 2. (2002), pp. 822-837. by Pemra Doruker, Robert L. Jernigan, Isabelle Navizet, Rigoberto Hernandez posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:39:25 as
	Comparison of mode analyses at different resolutions applied to nucleic acid systems. [My Copy] Biophys J, Vol. 89, No. 5. (November 2005), pp. 2939-2949. by A. W. Van Wynsberghe, Q. Cui posted to coarse-grained gnm pca cmn by Diego_Prada on 2008-02-18 18:18:29 as along with 2 people aqeel eckart_bindewald
	Global ribosome motions revealed with elastic network model [My Copy] Journal of Structural Biology, Vol. 147, No. 3. (September 2004), pp. 302-314. by Yongmei Wang, A. J. Rader, Ivet Bahar, Robert L. Jernigan posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:10:07 as along with 3 people aqeel eckart_bindewald ffranca
	Folding core predictions from network models of proteins [My Copy] Polymer In Conformational Protein Conformations, Vol. 45, No. 2. (January 2004), pp. 659-668. by A. J. Rader, Ivet Bahar posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:07:31 as along with 1 person choonpeng
	Escherichia coli adenylate kinase dynamics: comparison of elastic network model modes with mode-coupling (15)N-NMR relaxation data. [My Copy] Proteins, Vol. 57, No. 3. (15 November 2004), pp. 468-480. by N. A. Temiz, E. Meirovitch, I. Bahar posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:04:46 as along with 2 people apaydin aqeel
	Elastic Properties of Proteins: Insight on the Folding Process and Evolutionary Selection of Native Structures [My Copy] Journal of Molecular Biology, Vol. 321, No. 5. (30 August 2002), pp. 909-921. by Cristian Micheletti, Gianluca Lattanzi, Amos Maritan posted to coarse-grained gnm go by Diego_Prada on 2008-02-18 17:44:17 as along with 2 people and 2 groups barry Einat structural_bioinformatics Bioinformatics
	The influence of conformational fluctuations on enzymatic activity: modelling the functional motion of $β$-secretase [My Copy] Journal of Physics Condensed Matter, Vol. 17 (May 2005), 1581. by M. Neri, M. Cascella, C. Micheletti posted to coarse-grained gnm by Diego_Prada on 2008-02-18 17:41:12 as
	Crucial stages of protein folding through a solvable model: Predicting target sites for enzyme-inhibiting drugs [My Copy] Protein Sci, Vol. 11, No. 8. (1 August 2002), pp. 1878-1887. by Cristian Micheletti, Fabio Cecconi, Alessandro Flammini, Amos Maritan posted to coarse-grained gnm by Diego_Prada on 2008-02-18 17:36:33 as

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free-energy	96
chapt_cmn	69
networks	66
short-peptides	63
hexapeptide	48
plos	47
md	41
communities	38
markov	35
stochastic_processes	34
protein_folding	33
gnm	32
cmn	31
protein_dynamics	31
pca	30
amino	28
amyloids	27
dialanine	27
md_history	27
methods	27
transition_path	26
articulo	21
complex_systems	21
coarse-grained	18
beta-hairpin	16
hp_model	16
dpca	15
proteins	15
force-fields	13
reaction_paths	13
water	13
chapt_amino	12
statistical_mechanics	12
transition_states	10
clustering	8
experimental	8
first_passage	8
markov_state_models	7
problems_fel_dof	7
active_site	6
glass_transition	6
mutual-information	6
rmsd	6
sampling	6
secondary_structure	6
struct_decorr	6
collective_motions	5
glycine	5
hot	5
kramers	5
langevin	5
mios	5
out_of_equilibrium	5
review	5
allostery	4
entropy	4
kinetic_models	4
mc	4
percolation	4
qha	4
alanine	3
dihedral	3
energy_landscape	3
rol_nodes	3
work_theorem	3
ala5	2
bayesian_analysis	2
conformational_entropy	2
fca	2
funnels	2
go	2
information	2
irreversibility	2
lanvegin	2
leas_action	2
non_markovian	2
probability_distributions	2
statistics	2
wavelets	2
aggregation	1
chain_interactions	1
discrete_breathers	1
enkaphalin	1
fibril_formation	1
flagellum	1
fre	1
hurst_exponent	1
information_theory	1
latex	1
mpi	1
nmr	1
nonequilibrium	1
opls	1
pendiente	1
protein_flexibility	1
relaxation_processes	1
statistical_models	1
t_dependence	1
temperature_dependence	1

Diego_Prada's coarse-grained [18 articles] Export

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