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Diego_Prada's coarse-grained [12 articles]

Recent papers added to Diego_Prada's library classified by the tag coarse-grained. You can also see everyone's coarse-grained.
  • Annealed importance sampling of dileucine peptide
    (3 Apr 2007)
    by Edward Lyman, Daniel M Zuckerman
    posted to coarse-grained protein_dynamics struct_decorr by Diego_Prada on 2008-04-21 10:15:40 as **
  • Demonstrated convergence of the equilibrium ensemble for a fast united-residue protein model
    (24 Mar 2007)
    by Marty F Ytreberg, Svetlana, Daniel M Zuckerman
    posted to coarse-grained protein_dynamics struct_decorr by Diego_Prada on 2008-04-21 10:13:08 as **
  • Free energy landscapes of model peptides and proteins
    The Journal of Chemical Physics, Vol. 118, No. 8. (2003), pp. 3891-3897.
    by David A Evans, David J Wales
    posted to coarse-grained free-energy proteins by Diego_Prada on 2008-04-11 20:05:03 as **
  • Design of amino acid sequences to fold into C[sub alpha]-model proteins
    The Journal of Chemical Physics, Vol. 123, No. 5. (2005)
    by A Amatori, G Tiana, L Sutto, Ferkinghoff J Borg, A Trovato, RA Broglia
    posted to coarse-grained by Diego_Prada on 2008-02-18 18:48:21 as ****
  • Important fluctuation dynamics of large protein structures are preserved upon coarse-grained renormalization
    International Journal of Quantum Chemistry, Vol. 90, No. 2. (2002), pp. 822-837.
    by Pemra Doruker, Robert L Jernigan, Isabelle Navizet, Rigoberto Hernandez
    posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:39:25 as read
  • Comparison of mode analyses at different resolutions applied to nucleic acid systems.
    Biophys J, Vol. 89, No. 5. (November 2005), pp. 2939-2949.
    by AW Van Wynsberghe, Q Cui
    posted to coarse-grained csn gnm pca by Diego_Prada on 2008-02-18 18:18:29 as **** along with 2 people aqeel eckart_bindewald
  • Global ribosome motions revealed with elastic network model
    Journal of Structural Biology, Vol. 147, No. 3. (September 2004), pp. 302-314.
    by Yongmei Wang, AJ Rader, Ivet Bahar, Robert L Jernigan
    posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:10:07 as read along with 3 people aqeel eckart_bindewald ffranca
  • Folding core predictions from network models of proteins
    Polymer, Vol. 45, No. 2. (January 2004), pp. 659-668.
    by AJ Rader, Ivet Bahar
    posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:07:31 as read along with 1 person choonpeng
  • Escherichia coli adenylate kinase dynamics: comparison of elastic network model modes with mode-coupling (15)N-NMR relaxation data.
    Proteins, Vol. 57, No. 3. (15 November 2004), pp. 468-480.
    by NA Temiz, E Meirovitch, I Bahar
    posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:04:46 as read along with 2 people apaydin aqeel
  • Elastic Properties of Proteins: Insight on the Folding Process and Evolutionary Selection of Native Structures
    Journal of Molecular Biology, Vol. 321, No. 5. (30 August 2002), pp. 909-921.
    by Cristian Micheletti, Gianluca Lattanzi, Amos Maritan
    posted to coarse-grained gnm go by Diego_Prada on 2008-02-18 17:44:17 as read along with 2 people and 2 groups barry Einat structural_bioinformatics Bioinformatics
  • The influence of conformational fluctuations on enzymatic activity: modelling the functional motion of $β$-secretase
    Journal of Physics Condensed Matter, Vol. 17 (May 2005), 1581.
    by M Neri, M Cascella, C Micheletti
    posted to coarse-grained gnm by Diego_Prada on 2008-02-18 17:41:12 as read
  • Crucial stages of protein folding through a solvable model: Predicting target sites for enzyme-inhibiting drugs
    Protein Sci, Vol. 11, No. 8. (1 August 2002), pp. 1878-1887.
    by Cristian Micheletti, Fabio Cecconi, Alessandro Flammini, Amos Maritan
    posted to coarse-grained gnm by Diego_Prada on 2008-02-18 17:36:33 as read
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