Diego_Prada's dpca [15 articles] Export

Recent papers added to Diego_Prada's library classified by the tag dpca. You can also see everyone's dpca.

	How Adequate are One- and Two-Dimensional Free Energy Landscapes for Protein Folding Dynamics? [My Copy] Physical Review Letters, Vol. 102, No. 23. (2009), 238102. by Gia G. Maisuradze, Adam Liwo, Harold A. Scheraga posted to protein_dynamics pca funnels free-energy energy_landscape dpca by Diego_Prada on 2009-06-15 09:51:22 as along with 1 person agrossfield
	In silico Relationship between Configurational Entropy and Soft Degrees of Freedom in Proteins and Peptides [My Copy] Physical Review Letters, Vol. 102, No. 11. (2009), 118108. by Da W. Li, Rafael Brüschweiler posted to cmn dialanine dihedral dpca entropy free-energy qha by Diego_Prada on 2009-06-03 11:08:23 as along with 2 people and 1 group anna_yershova sobolevnrm baker-group
	Identification of biomolecular conformations from incomplete torsion angle observations by hidden markov models [My Copy] Journal of Computational Chemistry, Vol. 28, No. 15. (2007), pp. 2453-2464. by Alexander Fischer, Sonja Waldhausen, Illia Horenko, Eike Meerbach, Christof Schütte posted to dpca markov by Diego_Prada on 2009-05-30 20:23:51 as
	A comparison of techniques for calculating protein essential dynamics [My Copy] Journal of Computational Chemistry, Vol. 18, No. 2. (1997), pp. 169-181. by D. M. F. Van Aalten, Bert L. de Groot, J. B. C. Findlay, H. J. C. Berendsen, A. Amadei posted to articulo dpca pca by Diego_Prada on 2009-03-23 17:37:59 as
	2D Entropy of Discrete Molecular Ensembles [My Copy] J. Chem. Theory Comput., Vol. 2, No. 1. (10 January 2006), pp. 18-24. by J. Wang, R. Bruschweiler posted to articulo dpca by Diego_Prada on 2009-03-23 16:31:59 as along with 1 person dmobley
	Circular effects in representations of an RNA nucleotides data set in relation with principal components analysis [My Copy] Chemometrics and Intelligent Laboratory Systems, Vol. 56, No. 2. (30 May 2001), pp. 61-71. by T. H. Reijmers, R. Wehrens, L. M. C. Buydens posted to articulo dpca by Diego_Prada on 2009-03-23 16:28:55 as
	Efficient evaluation of sampling quality of molecular dynamics simulations by clustering of dihedral torsion angles and Sammon mapping [My Copy] Journal of Computational Chemistry, Vol. 30, No. 3. (2009), pp. 479-492. by Stephan Frickenhaus, Srinivasaraghavan Kannan, Martin Zacharias posted to articulo dpca by Diego_Prada on 2009-03-21 17:55:14 as along with 3 people and 1 group scampos sobolevnrm agrossfield baker-group
	Principal component analysis for protein folding dynamics [My Copy] Journal of Molecular Biology (15 October 2008) by G. Maisuradze, A. Liwo, H. Scheraga posted to articulo dpca md pca by Diego_Prada on 2009-03-21 17:04:23 as along with 4 people and 1 group scampos phoenixzxl barry paulschlesinger structural_bioinformatics
	Comment on: "Energy landscape of a small peptide revealed by dihedral angle principal component analysis" [My Copy] Proteins (2 February 2006) by Konrad Hinsen posted to articulo dpca pca by Diego_Prada on 2009-03-21 16:48:59 as along with 1 person kentsis
	Reply to the comment on ldquoEnergy landscape of a small peptide revealed by dihedral angle principal component analysisrdquo [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 64, No. 3. (2006), pp. 798-799. by Yuguang Mu, Phuong Nguyen, Gerhard Stock posted to articulo dpca pca by Diego_Prada on 2009-03-21 16:45:56 as
	Variances and covariances of coordinates in polar crystal systems [My Copy] Acta Crystallographica Section A, Vol. 30, No. 2. (Mar 1974), pp. 261-264. by J. Waser posted to dpca by Diego_Prada on 2009-01-23 12:22:10 as
	On the standard deviation of a dihedral angle [My Copy] Acta Crystallographica Section A, Vol. 30, No. 6. (Nov 1974), pp. 848-849. by U. Shmueli posted to dpca by Diego_Prada on 2009-01-23 12:20:40 as
	Construction of the free energy landscape of biomolecules via dihedral angle principal component analysis [My Copy] The Journal of Chemical Physics, Vol. 128, No. 24. (2008) by Alexandros Altis, Moritz Otten, Phuong H. Nguyen, Rainer Hegger, Gerhard Stock posted to articulo dpca free-energy hexapeptide pca by Diego_Prada on 2008-12-16 11:16:42 as along with 2 people scampos agrossfield
	Energy landscape of a small peptide revealed by dihedral angle principal component analysis [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 58, No. 1. (2005), pp. 45-52. by Yuguang Mu, Phuong H. Nguyen, Gerhard Stock posted to articulo dpca hexapeptide md pca by Diego_Prada on 2008-09-24 12:25:09 as
	Dihedral angle principal component analysis of molecular dynamics simulations [My Copy] The Journal of Chemical Physics, Vol. 126, No. 24. (2007) by Alexandros Altis, Phuong H. Nguyen, Rainer Hegger, Gerhard Stock posted to articulo dpca md pca protein_dynamics by Diego_Prada on 2008-09-24 11:39:38 as along with 4 people and 1 group scampos barry ruvido nh structural_bioinformatics

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free-energy	87
networks	66
short-peptides	62
chapt_cmn	61
hexapeptide	48
plos	47
md	41
communities	38
markov	35
stochastic_processes	34
cmn	29
pca	29
protein_dynamics	29
protein_folding	27
amino	26
amyloids	26
md_history	26
dialanine	25
gnm	25
articulo	21
complex_systems	21
coarse-grained	18
hp_model	16
beta-hairpin	15
dpca	15
proteins	15
methods	14
transition_path	13
water	13
chapt_amino	12
force-fields	12
statistical_mechanics	12
clustering	8
experimental	8
first_passage	8
reaction_paths	7
transition_states	7
active_site	6
glass_transition	6
mutual-information	6
struct_decorr	6
glycine	5
hot	5
kramers	5
langevin	5
mios	5
out_of_equilibrium	5
rmsd	5
secondary_structure	5
allostery	4
entropy	4
kinetic_models	4
mc	4
percolation	4
qha	4
collective_motions	3
dihedral	3
energy_landscape	3
rol_nodes	3
work_theorem	3
ala5	2
alanine	2
bayesian_analysis	2
fca	2
funnels	2
go	2
information	2
irreversibility	2
lanvegin	2
leas_action	2
non_markovian	2
statistics	2
wavelets	2
chain_interactions	1
conformational_entropy	1
discrete_breathers	1
enkaphalin	1
flagellum	1
hurst_exponent	1
information_theory	1
latex	1
markov_state_models	1
mpi	1
nmr	1
nonequilibrium	1
opls	1
pendiente	1
protein_flexibility	1
relaxation_processes	1
review	1
statistical_models	1
t_dependence	1

Diego_Prada's dpca [15 articles] Export

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