Register | Log in | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

Diego_Prada's free-energy [28 articles]

Recent papers added to Diego_Prada's library classified by the tag free-energy. You can also see everyone's free-energy.
  • Complexity of free energy landscapes of peptides revealed by nonlinear principal component analysis
    Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 4. (2006), pp. 898-913.
    by Phuong H Nguyen
    posted to pca hexapeptide free-energy by Diego_Prada on 2008-07-04 18:29:56 as ***** along with 3 people nickolay npt11tpn ladab
  • Energy landscapes of conformationally constrained peptides
    The Journal of Chemical Physics, Vol. 114, No. 2. (2001), pp. 993-1009.
    by Yaakov Levy, Oren M Becker
    posted to hexapeptide free-energy by Diego_Prada on 2008-07-04 17:33:07 as **
  • Dynamics of hierarchical folding on energy landscapes of hexapeptides
    The Journal of Chemical Physics, Vol. 115, No. 22. (2001), pp. 10533-10547.
    by Yaakov Levy, Joshua Jortner, Oren M Becker
    posted to hexapeptide free-energy by Diego_Prada on 2008-07-04 17:30:57 as **
  • Effect of Conformational Constraints on the Topography of Complex Potential Energy Surfaces
    Physical Review Letters, Vol. 81, No. 5. (1998), 1126.
    by Yaakov Levy, Oren M Becker
    posted to hexapeptide free-energy by Diego_Prada on 2008-07-04 17:20:57 as **
  • Some further applications of discrete path sampling to cluster isomerization
    Molecular Physics, pp. 891-908.
    by David J Wales
    posted to stochastic_processes free-energy by Diego_Prada on 2008-05-07 15:34:07 as **
  • Discrete path sampling
    Molecular Physics, pp. 3285-3305.
    by DJ Wales
    posted to stochastic_processes free-energy by Diego_Prada on 2008-05-07 15:32:10 as **
  • Free energy landscapes of model peptides and proteins
    The Journal of Chemical Physics, Vol. 118, No. 8. (2003), pp. 3891-3897.
    by David A Evans, David J Wales
    posted to coarse-grained free-energy proteins by Diego_Prada on 2008-04-11 20:05:03 as **
  • Network and graph analyses of folding free energy surfaces
    Current Opinion in Structural Biology, Vol. 16, No. 1. (February 2006), pp. 71-78.
    by Amedeo Caflisch
    posted to free-energy protein_dynamics by Diego_Prada on 2008-04-11 19:59:28 as ** along with 4 people apaydin bilab mtw jlh64
  • Graph transformation method for calculating waiting times in Markov chains
    The Journal of Chemical Physics, Vol. 124, No. 23. (2006)
    by Semen A Trygubenko, David J Wales
    posted to free-energy markov by Diego_Prada on 2008-04-11 19:40:07 as **
  • Energy landscapes and properties of biomolecules
    Physical Biology, Vol. 2, No. 4. (December 2005), S86.
    by David J Wales
    posted to free-energy hot by Diego_Prada on 2008-02-19 11:10:33 as **** along with 1 person mtw
  • Importance of Metastable States in the Free Energy Landscapes of Polypeptide Chains
    Physical Review Letters, Vol. 99, No. 17. (2007)
    by Stefan Auer, Mark A Miller, Sergei V Krivov, Christopher M Dobson, Martin Karplus, Michele Vendruscolo
    posted to free-energy hot by Diego_Prada on 2008-02-19 10:53:07 as *****
  • Free energy disconnectivity graphs: Application to peptide models
    The Journal of Chemical Physics, Vol. 117, No. 23. (2002), pp. 10894-10903.
    by Sergei V Krivov, Martin Karplus
    posted to free-energy by Diego_Prada on 2008-02-19 10:28:36 as *****
  • Potential Energy Surfaces and Conformational Transitions in Biomolecules: A Successive Confinement Approach Applied to a Solvated Tetrapeptide
    Physical Review Letters, Vol. 88, No. 3. (2 January 2002), 038101.
    by Sergei V Krivov, Sergei F Chekmarev, Martin Karplus
    posted to free-energy by Diego_Prada on 2008-02-19 10:26:36 as ****
  • One-Dimensional Free-Energy Profiles of Complex Systems: Progress Variables that Preserve the Barriers.
    J Phys Chem B Condens Matter Mater Surf Interfaces Biophys, Vol. 110, No. 25. (29 June 2006), pp. 12689-12698.
    by SV Krivov, M Karplus
    posted to free-energy by Diego_Prada on 2008-02-19 10:24:24 as ****
  • Hidden complexity of free energy surfaces for peptide (protein) folding.
    Proc Natl Acad Sci U S A, Vol. 101, No. 41. (12 October 2004), pp. 14766-14770.
    by SV Krivov, M Karplus
    posted to free-energy proteins by Diego_Prada on 2008-02-19 10:22:29 as **** along with 4 people apaydin dimka bilab Fernando_FF
  • Exploration of the free-energy surface of a three-helix peptide with stochastic optimization methods
    International Journal of Quantum Chemistry, Vol. 99, No. 5. (2004), pp. 854-863.
    by T Herges, A Schug, W Wenzel
    posted to free-energy protein_dynamics by Diego_Prada on 2008-02-19 10:19:16 as **
  • From A to B in free energy space
    The Journal of Chemical Physics, Vol. 126, No. 5. (2007)
    by Davide Branduardi, Francesco L Gervasio, Michele Parrinello
    posted to free-energy hot by Diego_Prada on 2008-02-19 10:14:26 as ***** along with 2 people ruvido kdesmond
  • The Meaning of Component Analysis: Decomposition of the Free Energy in Terms of Specific Interactions
    Journal of Molecular Biology, Vol. 254, No. 5. (15 December 1995), pp. 801-807.
    by S Boresch, M Karplus
    posted to free-energy pca by Diego_Prada on 2008-02-19 10:11:40 as **** along with 1 person dmobley
  • Free-energy landscape of the villin headpiece in an all-atom force field.
    Structure (Camb), Vol. 13, No. 4. (April 2005), pp. 661-668.
    by T Herges, W Wenzel
    posted to free-energy protein_dynamics by Diego_Prada on 2008-02-19 10:10:21 as *** along with 2 people nigham fjc1
  • Escaping free-energy minima.
    Proc Natl Acad Sci U S A, Vol. 99, No. 20. (1 October 2002), pp. 12562-12566.
    by A Laio, M Parrinello
    posted to free-energy by Diego_Prada on 2008-02-19 10:04:16 as **** along with 4 people AndreaColetta apaydin baaden and_ped10
  • Energy landscapes: calculating pathways and rates
    International Reviews in Physical Chemistry, Vol. 25, No. 1-2. (8211), pp. 237-282.
    by Wales, J David
    posted to kramers free-energy by Diego_Prada on 2008-02-17 13:20:49 as **
  • Equilibrium thermodynamics from basin-sampling
    The Journal of Chemical Physics, Vol. 124, No. 4. (2006)
    by Tetyana V Bogdan, David J Wales, Florent Calvo
    posted to free-energy by Diego_Prada on 2008-02-17 13:18:39 as *****
  • Potential Energy and Free Energy Landscapes
    J. Phys. Chem. B, Vol. 110, No. 42. (26 October 2006), pp. 20765-20776.
    by DJ Wales, TV Bogdan
    posted to kramers free-energy by Diego_Prada on 2008-02-17 13:17:27 as ** along with 1 person jlh64
  • Energy Landscapes
    (March 2004)
    by D Wales
    posted to free-energy by Diego_Prada on 2008-02-17 13:15:03 as **
  • Construction of effective free energy landscape from single-molecule time series
    Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19297-19302.
    by Akinori Baba, Tamiki Komatsuzaki
    posted to communities csn networks free-energy by Diego_Prada on 2008-02-17 12:51:10 as ** along with 6 people and 1 group hsekiguc hmk zwang cactus sobolevnrm arnaudriegert baker-group
  • Topographical complexity of multidimensional energy landscapes
    Proceedings of the National Academy of Sciences, Vol. 103, No. 49. (5 December 2006), pp. 18551-18555.
    by Gareth J Rylance, Roy L Johnston, Yasuhiro Matsunaga, Chun-Biu Li, Akinori Baba, Tamiki Komatsuzaki
    posted to communities csn networks free-energy by Diego_Prada on 2008-02-17 12:50:10 as **
  • Network analysis of protein dynamics.
    FEBS Lett, Vol. 581, No. 15. (24 July 2007), pp. 2776-2782.
    by C Böde, IA Kovács, MS Szalay, R Palotai, T Korcsmáros, P Csermely
    posted to csn networks free-energy by Diego_Prada on 2008-02-17 12:20:15 as **** along with 3 people choonpeng george_g jlh64
  • From the Cover: Complex network analysis of free-energy landscapes
    PNAS, Vol. 104, No. 6. (6 February 2007), pp. 1817-1822.
    by D Gfeller, De Los, A Caflisch, F Rao
    posted to communities csn networks free-energy by Diego_Prada on 2008-02-17 12:12:33 as ** along with 4 people noby jlh64 marcio nh
    • Note: You may cite this page as: http://www.citeulike.org/user/Diego_Prada/tag/free-energy

    RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.