Diego_Prada's gnm [25 articles] Export

Recent papers added to Diego_Prada's library classified by the tag gnm. You can also see everyone's gnm.

	Flexibility and packing in proteins [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 3. (5 February 2002), pp. 1274-1279. by Bertil Halle posted to protein_flexibility protein_dynamics gnm free-energy by Diego_Prada on 2009-09-19 15:55:12 as along with 7 people and 3 groups edws barry sobolevnrm ana aqeel allmensch hmk baker-group structural_bioinformatics Bioinformatics
	Discrete breathers in protein structures [My Copy] Physical Biology, Vol. 5, No. 2. (21 June 2008), 026001. by Francesco Piazza, Yves-Henri Sanejouand posted to networks gnm discrete_breathers allostery active_site by Diego_Prada on 2009-09-17 18:17:02 as along with 2 people sanejouand joseph_x_zhou
	Network Analysis of Protein Structures Identifies Functional Residues [My Copy] Journal of Molecular Biology, Vol. 344, No. 4. (03 December 2004), pp. 1135-1146. by Gil Amitai, Arye Shemesh, Einat Sitbon, et al.Maxim Shklar, Dvir Netanely, Ilya Venger, Shmuel Pietrokovski posted to networks gnm active_site by Diego_Prada on 2009-09-17 17:52:49 as along with 8 people and 1 group chrn vavi bicko Einat amitai sriram_s massivemayhem siebertm structural_bioinformatics
	Detection of Functional Modes in Protein Dynamics [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000480. by Jochen S. Hub, Bert L. de Groot posted to pca gnm collective_motions by Diego_Prada on 2009-09-04 09:14:56 as along with 3 people sobolevnrm klexa zwang
	Global Motions of the Nuclear Pore Complex: Insights from Elastic Network Models [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (4 September 2009), e1000496. by Timothy R. Lezon, Andrej Sali, Ivet Bahar posted to gnm by Diego_Prada on 2009-09-04 09:12:27 as
	Thermodynamic stability of small-world oscillator networks: A case study of proteins [My Copy] (7 May 2009) by Jie Ren, Baowen Li posted to gnm by Diego_Prada on 2009-06-03 10:53:43 as
	Temperature Dependence of Normal Mode Reconstructions of Protein Dynamics [My Copy] Physical Review Letters, Vol. 102, No. 21. (2009), 218104. by Francesco Piazza, Paolo, Fabio Cecconi posted to gnm t_dependence by Diego_Prada on 2009-05-31 16:11:08 as along with 6 people and 1 group abovell dchen agrossfield paulschlesinger cecconi_fabio kdesmond2 smc-infm
	Prediction of chain flexibility in proteins [My Copy] Naturwissenschaften, Vol. 72, No. 4. (1 April 1985), pp. 212-213. by P. A. Karplus, G. E. Schulz posted to gnm protein_dynamics protein_folding proteins by Diego_Prada on 2009-04-30 11:55:17 as
	Domain swapping is a consequence of minimal frustration [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 38. (2004), pp. 13786-13791. by Sichun Yang, Samuel S. Cho, Yaakov Levy, et al.Margaret S. Cheung, Herbert Levine, Peter G. Wolynes, José N. Onuchic posted to gnm go md md_history by Diego_Prada on 2009-04-05 18:27:24 as along with 1 person apaydin
	Contact order, transition state placement and the refolding rates of single domain proteins [My Copy] Journal of Molecular Biology, Vol. 277, No. 4. (10 April 1998), pp. 985-994. by Kevin W. Plaxco, Kim T. Simons, David Baker posted to gnm md_history by Diego_Prada on 2009-04-05 17:33:09 as along with 1 person RamuAnandakrishnan
	Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor. [My Copy] Proc Natl Acad Sci U S A, Vol. 80, No. 21. (November 1983), pp. 6571-6575. by B. Brooks, M. Karplus posted to gnm md_history by Diego_Prada on 2009-04-05 17:12:49 as along with 5 people mkrishna baaden lna aqeel saravan
	Low Frequency Motion in Proteins [My Copy] Journal of Computational Physics, Vol. 151 (May 1999), pp. 169-189. by P. Dauber-Osguthorpe, D. J. Osguthorpe, P. S. Stern, J. Moult posted to gnm by Diego_Prada on 2008-02-18 18:45:02 as
	Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast Motions in Relation to Function and Stability [My Copy] Physical Review Letters, Vol. 80, No. 12. (23 Mar 1998), pp. 2733-2736. by Ivet Bahar, Ali R. Atilgan, Melik C. Demirel, Burak Erman posted to gnm by Diego_Prada on 2008-02-18 18:41:25 as along with 2 people edws choonpeng
	Important fluctuation dynamics of large protein structures are preserved upon coarse-grained renormalization [My Copy] International Journal of Quantum Chemistry, Vol. 90, No. 2. (2002), pp. 822-837. by Pemra Doruker, Robert L. Jernigan, Isabelle Navizet, Rigoberto Hernandez posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:39:25 as
	Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis [My Copy] Physical Review Letters, Vol. 77, No. 9. (1996), 1905. by Monique M. Tirion posted to gnm by Diego_Prada on 2008-02-18 18:36:27 as along with 4 people and 1 group abovell akraemer joseph_x_zhou aqeel protein_Dyn
	Comparison of mode analyses at different resolutions applied to nucleic acid systems. [My Copy] Biophys J, Vol. 89, No. 5. (November 2005), pp. 2939-2949. by A. W. Van Wynsberghe, Q. Cui posted to coarse-grained gnm pca cmn by Diego_Prada on 2008-02-18 18:18:29 as along with 2 people aqeel eckart_bindewald
	Harmonic and anharmonic aspects in the dynamics of BPTI: A normal mode analysis and principal component analysis [My Copy] Protein Sci, Vol. 3, No. 6. (1 June 1994), pp. 936-943. by S. Hayward, A. Kitao, N. Go posted to gnm pca by Diego_Prada on 2008-02-18 18:15:23 as along with 1 person saravan
	Global ribosome motions revealed with elastic network model [My Copy] Journal of Structural Biology, Vol. 147, No. 3. (September 2004), pp. 302-314. by Yongmei Wang, A. J. Rader, Ivet Bahar, Robert L. Jernigan posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:10:07 as along with 3 people aqeel eckart_bindewald ffranca
	Folding core predictions from network models of proteins [My Copy] Polymer In Conformational Protein Conformations, Vol. 45, No. 2. (January 2004), pp. 659-668. by A. J. Rader, Ivet Bahar posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:07:31 as along with 1 person choonpeng
	Escherichia coli adenylate kinase dynamics: comparison of elastic network model modes with mode-coupling (15)N-NMR relaxation data. [My Copy] Proteins, Vol. 57, No. 3. (15 November 2004), pp. 468-480. by N. A. Temiz, E. Meirovitch, I. Bahar posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:04:46 as along with 2 people apaydin aqeel
	Collective deformations in proteins determined by a mode analysis of molecular dynamics trajectories [My Copy] Polymer, Vol. 43, No. 2. (January 2002), pp. 431-439. by Pemra Doruker, Ivet Bahar, Canan Baysal, Burak Erman posted to gnm pca protein_dynamics by Diego_Prada on 2008-02-18 17:48:28 as
	Elastic Properties of Proteins: Insight on the Folding Process and Evolutionary Selection of Native Structures [My Copy] Journal of Molecular Biology, Vol. 321, No. 5. (30 August 2002), pp. 909-921. by Cristian Micheletti, Gianluca Lattanzi, Amos Maritan posted to coarse-grained gnm go by Diego_Prada on 2008-02-18 17:44:17 as along with 2 people and 2 groups barry Einat structural_bioinformatics Bioinformatics
	The influence of conformational fluctuations on enzymatic activity: modelling the functional motion of $β$-secretase [My Copy] Journal of Physics Condensed Matter, Vol. 17 (May 2005), 1581. by M. Neri, M. Cascella, C. Micheletti posted to coarse-grained gnm by Diego_Prada on 2008-02-18 17:41:12 as
	Crucial stages of protein folding through a solvable model: Predicting target sites for enzyme-inhibiting drugs [My Copy] Protein Sci, Vol. 11, No. 8. (1 August 2002), pp. 1878-1887. by Cristian Micheletti, Fabio Cecconi, Alessandro Flammini, Amos Maritan posted to coarse-grained gnm by Diego_Prada on 2008-02-18 17:36:33 as
	Modeling truncated hemoglobin vibrational dynamics [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 62, No. 1. (2006), pp. 173-182. by Luca Marsella posted to gnm by Diego_Prada on 2008-02-18 17:30:42 as

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free-energy	87
networks	66
short-peptides	62
chapt_cmn	61
hexapeptide	48
plos	47
md	41
communities	38
markov	35
stochastic_processes	34
cmn	29
pca	29
protein_dynamics	29
protein_folding	27
amino	26
amyloids	26
md_history	26
dialanine	25
gnm	25
articulo	21
complex_systems	21
coarse-grained	18
hp_model	16
beta-hairpin	15
dpca	15
proteins	15
methods	14
transition_path	13
water	13
chapt_amino	12
force-fields	12
statistical_mechanics	12
clustering	8
experimental	8
first_passage	8
reaction_paths	7
transition_states	7
active_site	6
glass_transition	6
mutual-information	6
struct_decorr	6
glycine	5
hot	5
kramers	5
langevin	5
mios	5
out_of_equilibrium	5
rmsd	5
secondary_structure	5
allostery	4
entropy	4
kinetic_models	4
mc	4
percolation	4
qha	4
collective_motions	3
dihedral	3
energy_landscape	3
rol_nodes	3
work_theorem	3
ala5	2
alanine	2
bayesian_analysis	2
fca	2
funnels	2
go	2
information	2
irreversibility	2
lanvegin	2
leas_action	2
non_markovian	2
statistics	2
wavelets	2
chain_interactions	1
conformational_entropy	1
discrete_breathers	1
enkaphalin	1
flagellum	1
hurst_exponent	1
information_theory	1
latex	1
markov_state_models	1
mpi	1
nmr	1
nonequilibrium	1
opls	1
pendiente	1
protein_flexibility	1
relaxation_processes	1
review	1
statistical_models	1
t_dependence	1

Diego_Prada's gnm [25 articles] Export

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