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Diego_Prada's gnm [14 articles]

Recent papers added to Diego_Prada's library classified by the tag gnm. You can also see everyone's gnm.
  • Low Frequency Motion in Proteins
    Journal of Computational Physics, Vol. 151 (May 1999), pp. 169-189.
    by P Dauber-Osguthorpe, DJ Osguthorpe, PS Stern, J Moult
    posted to gnm by Diego_Prada on 2008-02-18 18:45:02 as read
  • Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast Motions in Relation to Function and Stability
    Physical Review Letters, Vol. 80, No. 12. (23 March 1998), 2733.
    by Ivet Bahar, Ali R Atilgan, Melik C Demirel, Burak Erman
    posted to gnm by Diego_Prada on 2008-02-18 18:41:25 as read along with 1 person choonpeng
  • Important fluctuation dynamics of large protein structures are preserved upon coarse-grained renormalization
    International Journal of Quantum Chemistry, Vol. 90, No. 2. (2002), pp. 822-837.
    by Pemra Doruker, Robert L Jernigan, Isabelle Navizet, Rigoberto Hernandez
    posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:39:25 as read
  • Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis
    Physical Review Letters, Vol. 77, No. 9. (1996), 1905.
    by Monique M Tirion
    posted to gnm by Diego_Prada on 2008-02-18 18:36:27 as read along with 1 person aqeel
  • Comparison of mode analyses at different resolutions applied to nucleic acid systems.
    Biophys J, Vol. 89, No. 5. (November 2005), pp. 2939-2949.
    by AW Van Wynsberghe, Q Cui
    posted to coarse-grained csn gnm pca by Diego_Prada on 2008-02-18 18:18:29 as **** along with 2 people aqeel eckart_bindewald
  • Harmonic and anharmonic aspects in the dynamics of BPTI: A normal mode analysis and principal component analysis
    Protein Sci, Vol. 3, No. 6. (1 June 1994), pp. 936-943.
    by S Hayward, A Kitao, N Go
    posted to gnm pca by Diego_Prada on 2008-02-18 18:15:23 as **** along with 1 person saravan
  • Global ribosome motions revealed with elastic network model
    Journal of Structural Biology, Vol. 147, No. 3. (September 2004), pp. 302-314.
    by Yongmei Wang, AJ Rader, Ivet Bahar, Robert L Jernigan
    posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:10:07 as read along with 3 people aqeel eckart_bindewald ffranca
  • Folding core predictions from network models of proteins
    Polymer, Vol. 45, No. 2. (January 2004), pp. 659-668.
    by AJ Rader, Ivet Bahar
    posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:07:31 as read along with 1 person choonpeng
  • Escherichia coli adenylate kinase dynamics: comparison of elastic network model modes with mode-coupling (15)N-NMR relaxation data.
    Proteins, Vol. 57, No. 3. (15 November 2004), pp. 468-480.
    by NA Temiz, E Meirovitch, I Bahar
    posted to coarse-grained gnm by Diego_Prada on 2008-02-18 18:04:46 as read along with 2 people apaydin aqeel
  • Collective deformations in proteins determined by a mode analysis of molecular dynamics trajectories
    Polymer, Vol. 43, No. 2. (January 2002), pp. 431-439.
    by Pemra Doruker, Ivet Bahar, Canan Baysal, Burak Erman
    posted to gnm pca protein_dynamics by Diego_Prada on 2008-02-18 17:48:28 as read
  • Elastic Properties of Proteins: Insight on the Folding Process and Evolutionary Selection of Native Structures
    Journal of Molecular Biology, Vol. 321, No. 5. (30 August 2002), pp. 909-921.
    by Cristian Micheletti, Gianluca Lattanzi, Amos Maritan
    posted to coarse-grained gnm go by Diego_Prada on 2008-02-18 17:44:17 as read along with 2 people and 2 groups barry Einat structural_bioinformatics Bioinformatics
  • The influence of conformational fluctuations on enzymatic activity: modelling the functional motion of $β$-secretase
    Journal of Physics Condensed Matter, Vol. 17 (May 2005), 1581.
    by M Neri, M Cascella, C Micheletti
    posted to coarse-grained gnm by Diego_Prada on 2008-02-18 17:41:12 as read
  • Crucial stages of protein folding through a solvable model: Predicting target sites for enzyme-inhibiting drugs
    Protein Sci, Vol. 11, No. 8. (1 August 2002), pp. 1878-1887.
    by Cristian Micheletti, Fabio Cecconi, Alessandro Flammini, Amos Maritan
    posted to coarse-grained gnm by Diego_Prada on 2008-02-18 17:36:33 as read
  • Modeling truncated hemoglobin vibrational dynamics
    Proteins: Structure, Function, and Bioinformatics, Vol. 62, No. 1. (2006), pp. 173-182.
    by Luca Marsella
    posted to gnm by Diego_Prada on 2008-02-18 17:30:42 as read
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