Diego_Prada's networks [66 articles] Export

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	The Structure and Function of Complex Networks [My Copy] SIAM Review, Vol. 45, No. 2. (2003), 167. by M. E. J. Newman posted to plos networks complex_systems chapt_cmn by Diego_Prada on 2009-11-18 19:00:31 as
	Community Structure in Directed Networks [My Copy] Physical Review Letters, Vol. 100, No. 11. (2008), 118703. by E. A. Leicht, M. E. J. Newman posted to networks communities chapt_cmn by Diego_Prada on 2009-11-18 18:16:29 as along with 7 people adamgyenge vtraag kubyaddi cgaugain cfelipesp Borelli orahcio
	Graph clustering by flow simulation [My Copy] (2000) by S. van Dongen posted to networks communities chapt_cmn by Diego_Prada on 2009-11-02 20:32:11 as
	Discrete breathers in protein structures [My Copy] Physical Biology, Vol. 5, No. 2. (21 June 2008), 026001. by Francesco Piazza, Yves-Henri Sanejouand posted to networks gnm discrete_breathers allostery active_site by Diego_Prada on 2009-09-17 18:17:02 as along with 2 people sanejouand joseph_x_zhou
	Perturbation waves in proteins and protein networks: applications of percolation and game theories in signaling and drug design. [My Copy] Current protein & peptide science, Vol. 10, No. 2. (April 2009), pp. 161-172. by Miklós A. Antal, Csaba Böde, Peter Csermely posted to percolation networks cmn active_site by Diego_Prada on 2009-09-17 18:13:11 as
	Creative elements: network-based predictions of active centres in proteins and cellular and social networks [My Copy] Trends in Biochemical Sciences, Vol. 33, No. 12. (20 December 2008), pp. 569-576. by P. Csermely posted to networks active_site by Diego_Prada on 2009-09-17 18:00:05 as along with 6 people and 1 group abhishek_tiwari sg45653 grahamc nilanjanroy cmmorel barry Bioinformatics
	Network Analysis of Protein Structures Identifies Functional Residues [My Copy] Journal of Molecular Biology, Vol. 344, No. 4. (03 December 2004), pp. 1135-1146. by Gil Amitai, Arye Shemesh, Einat Sitbon, et al.Maxim Shklar, Dvir Netanely, Ilya Venger, Shmuel Pietrokovski posted to networks gnm active_site by Diego_Prada on 2009-09-17 17:52:49 as along with 8 people and 1 group chrn vavi bicko Einat amitai sriram_s massivemayhem siebertm structural_bioinformatics
	Gradient networks [My Copy] Journal of Physics A: Mathematical and Theoretical, Vol. 41, No. 15. (2008), 155103. by Zoltan Toroczkai, Balazs Kozma, Kevin E. Bassler, N. W. Hengartner, G. Korniss posted to networks by Diego_Prada on 2009-09-17 17:42:05 as
	From time series to complex networks: The visibility graph [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 13. (1 April 2008), pp. 4972-4975. by Lucas Lacasa, Bartolo Luque, Fernando Ballesteros, Jordi Luque, Juan C. NuÃ±o posted to networks by Diego_Prada on 2009-09-15 17:58:14 as along with 5 people Borelli ocs AbnerCYH biehl vrich
	Assessing the relevance of node features for network structure [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 28. (14 July 2009), pp. 11433-11438. by Ginestra Bianconi, Paolo Pin, Matteo Marsili posted to communities networks by Diego_Prada on 2009-07-17 16:51:26 as along with 12 people rdiaz daforerog Kovanen zwang apocapoc winterstream trfield deanmalmgren tomt21 roys tmmurali statnet
	Protein folding on rugged energy landscapes: Conformational diffusion on fractal networks [My Copy] (24 Jun 2009) by Gregg Lois, J. Blawzdziewicz, Corey S. O'Hern posted to cmn coarse-grained complex_systems first_passage free-energy hp_model networks protein_dynamics protein_folding proteins reaction_paths transition_path by Diego_Prada on 2009-06-25 16:27:33 as
	Community detection in graphs [My Copy] (3 Jun 2009) by Santo Fortunato posted to communities networks by Diego_Prada on 2009-06-08 10:52:07 as along with 15 people mjb ecome AaronMcDaid saket pdlug dpf Bolozna lawraga Kovanen marinari juhop janpaniev acrmartins aheilbut deanmalmgren
	Transition networks for modeling the kinetics of conformational change in macromolecules [My Copy] Current Opinion in Structural Biology In Theory and simulation / Macromolecular assemblages, Vol. 18, No. 2. (April 2008), pp. 154-162. by Frank Noé, Stefan Fischer posted to chapt_cmn cmn hexapeptide markov networks plos by Diego_Prada on 2009-02-11 18:08:45 as along with 5 people and 3 groups aqeel barry sobolevnrm paulschlesinger toerst structural_bioinformatics baker-group McCammon
	Cartography of complex networks: modules and universal roles. [My Copy] Journal of statistical mechanics (Online), Vol. 2005, No. P02001. (1 February 2005), P02001. by Roger Guimerà, Luís Nunes A. Amaral posted to communities networks rol_nodes by Diego_Prada on 2008-08-28 11:46:35 as along with 3 people hrotsos senseable-urb diamantis
	Finding communities in linear time: a physics approach [My Copy] The European Physical Journal B - Condensed Matter and Complex Systems, Vol. 38, No. 2. (25 March 2004), pp. 331-338. by F. Wu, B. A. Huberman posted to chapt_cmn communities networks by Diego_Prada on 2008-08-16 12:57:54 as along with 1 person birukou
	Fast algorithm for detecting community structure in networks [My Copy] Physical Review E, Vol. 69, No. 6. (Jun 2004), 066133. by M. E. J. Newman posted to chapt_cmn communities networks by Diego_Prada on 2008-08-16 12:23:31 as along with 6 people Shirakawa muraken cgaugain tnhh RobMills pdlug
	Defining and identifying communities in networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 9. (2 March 2004), pp. 2658-2663. by Filippo Radicchi, Claudio Castellano, Federico Cecconi, Vittorio Loreto, Domenico Parisi posted to chapt_cmn communities networks by Diego_Prada on 2008-08-15 19:06:40 as along with 19 people and 2 groups akavipat mussi almadana christiand vtraag kremso kubyaddi fabianavernero haewoon castellano shivaram jfr yas merazzle gcalda ltabourier sparikh carlk tnhh smc-infm T_lab
	Detecting network communities: a new systematic and efficient algorithm [My Copy] Journal of Statistical Mechanics: Theory and Experiment, Vol. 2004, No. 10. (2004) by Luca Donetti, Miguel posted to chapt_cmn communities networks by Diego_Prada on 2008-08-15 19:01:49 as
	Comparing community structure identification [My Copy] Journal of Statistical Mechanics: Theory and Experiment, Vol. 2005, No. 09. (September 2005), pp. P09008-P09008. by Leon Danon, Albert Diaz-Guilera, Jordi Duch, Alex Arenas posted to chapt_cmn communities networks plos by Diego_Prada on 2008-08-15 17:59:14 as along with 8 people AaronMcDaid compbio krisl almadana Kovanen cgaugain conradlee dpf
	Percolation and cluster distribution. I. Cluster multiple labeling technique and critical concentration algorithm [My Copy] Physical Review B, Vol. 14, No. 8. (15 October 1976), 3438. by J. Hoshen, R. Kopelman posted to chapt_cmn methods networks percolation plos by Diego_Prada on 2008-08-15 17:08:33 as along with 1 person alexphys
	Complex networks: Structure and dynamics [My Copy] Physics Reports, Vol. 424, No. 4-5. (February 2006), pp. 175-308. by S. Boccaletti, V. Latora, Y. Moreno, M. Chavez, D. Hwang posted to chapt_cmn networks plos by Diego_Prada on 2008-08-13 17:13:46 as along with 39 people and 2 groups Sergey_gerbek Katieleonard tessonec heitzig-j jotwin dschafer yizhi hendysh vtraag janpaniev fierykylin acrmartins kshundyak kubyaddi ocs anphony panisson lfriedl jmenche tjpp ansobol jrw BarrosH afragop craigtalbert merazzle kevinweil gennaro muraken hariprasadt jaspervoskuilen flavian_vasile ltabourier salvoscellato watson nolodie khloudi ebalp spool complex networks Complex_Real_Networks
	Classes of small-world networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 21. (10 October 2000), pp. 11149-11152. by L. A. N. Amaral, A. Scala, M. BarthÃ©lÃ©my, H. E. Stanley posted to hp_model networks by Diego_Prada on 2008-08-11 22:56:48 as along with 27 people and 11 groups tessonec leonglester haewoon Bolozna Kovanen buluzhai camster KAllendoerfer xxc zqshen ChaTo yoh cristinaalp mmt kubyaddi muraken mattjb jaspervoskuilen PaulBHartzog yidao mylit JimFolk dejori Evangelia stefanoallesina subhacom Borelli dbk-lab Blog_and_Wiki_Research GraphVis Wikipedia ETEC533 ComplexAdaptiveSystems DSTO-CAS ic4 generif_paper CSU_School_of_Education Web2-0_Education
	Small-world networks and the conformation space of a short lattice polymer chain [My Copy] EPL (Europhysics Letters), Vol. 55, No. 4. (2001), pp. 594-600. by A. Scala, Nunes L. A. Amaral, M. Barthélémy posted to chapt_cmn hp_model networks plos by Diego_Prada on 2008-08-11 22:52:26 as
	Tools for network dynamics [My Copy] (27 Apr 2004) by Vilela R. Mendes posted to networks by Diego_Prada on 2008-08-10 22:04:48 as
	Statistical mechanics of complex networks [My Copy] (6 Jun 2001) by Reka Albert, Albert-Laszlo Barabasi posted to networks percolation by Diego_Prada on 2008-08-10 22:01:31 as along with 26 people and 2 groups nigini thepogoman suneilmohan satch5841 jeremygow danman sandeepdey ansobol jrw bayesian matiasg cmm henningpeters maqbes cerkut sugarexpletive awooga josepe mylit gi0rgi0ne rcrane napoleon1982 Ema maralena Borelli hryk FAB-lab EntrepreneurialRisks
	Diffusion and networks: A powerful combination! [My Copy] (26 Aug 2005) by Ingve Simonsen posted to networks cmn by Diego_Prada on 2008-08-10 21:58:41 as
	Critical phenomena in complex networks [My Copy] (1 May 2007) by S. N. Dorogovtsev, A. V. Goltsev, J. F. F. Mendes posted to networks by Diego_Prada on 2008-08-10 21:56:22 as along with 10 people autoplectic tnishi0 ansobol elsantosneto yaroslavvb balicea rsantana gi0rgi0ne misha thecolourblue
	Evolution of networks [My Copy] (7 Sep 2001) by S. N. Dorogovtsev, J. F. F. Mendes posted to networks by Diego_Prada on 2008-08-10 21:53:26 as along with 15 people and 2 groups pdlug zpinhead sergiun jb44 phreeza rrbarb korakot ansobol jrw rvasa lyongu maqbes jirlong ltabourier Ema Philosophy_of_Information Blog_and_Wiki_Research
	Complexities of social networks: A Physicist's perspective [My Copy] (8 May 2006) by Parongama Sen posted to networks by Diego_Prada on 2008-08-10 21:43:17 as along with 1 person gane5h
	Scale- free networks in cell biology [My Copy] (28 Oct 2005) by Reka Albert posted to networks by Diego_Prada on 2008-08-10 21:39:09 as
	Probability Distributions in Complex Systems [My Copy] (15 Jul 2007) by D. Sornette posted to complex_systems networks by Diego_Prada on 2008-08-10 21:32:51 as along with 6 people and 1 group acrmartins bigbossman MarioPaolucci muraken georgiad dpf LABSS
	Complex systems: Network thinking [My Copy] Artificial Intelligence In Special Review Issue, Vol. 170, No. 18. (December 2006), pp. 1194-1212. by Melanie Mitchell posted to complex_systems networks by Diego_Prada on 2008-08-10 20:12:48 as along with 8 people and 1 group rsantana kentz ddahlem scritic achiar grisogono watson robotact DSTO-CAS
	Classes of complex networks defined by role-to-role connectivity profiles [My Copy] Nat Phys, Vol. 3, No. 1. (January 2007), pp. 63-69. by Roger Guimera, Marta Sales-Pardo, Luis A. Amaral posted to complex_systems networks rol_nodes by Diego_Prada on 2008-08-10 19:33:16 as along with 9 people and 1 group lawraga adampah ocs tny aalibes okarsligil jaspervoskuilen biehl AbnerCYH Bioinformatics
	Complex networks: Augmenting the framework for the study of complex systems [My Copy] The European Physical Journal B - Condensed Matter, Vol. 38, No. 2. (March 2004), pp. 147-162. by L. Amaral, J. Ottino posted to complex_systems networks by Diego_Prada on 2008-08-10 19:31:17 as
	Complex systems and networks: challenges and opportunities for chemical and biological engineers [My Copy] Chemical Engineering Science In Complex Systems and Multi-scale Methodology, Vol. 59, No. 8-9. ( 2004), pp. 1653-1666. by L. A. N. Amaral, J. M. Ottino posted to chapt_cmn complex_systems networks plos by Diego_Prada on 2008-08-10 19:05:43 as
	Network Topology of a Potential Energy Landscape: A Static Scale-Free Network [My Copy] Physical Review Letters, Vol. 88, No. 23. (20 May 2002), 238701. by Jonathan P. K. Doye posted to networks cmn by Diego_Prada on 2008-08-10 19:03:17 as along with 1 person poccian
	Emergence of Scaling in Random Networks [My Copy] Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512. by Albert-László Barabási, Réka Albert posted to networks by Diego_Prada on 2008-08-10 18:52:48 as along with 51 people asangansi tonyony tessonec leonglester aniakovas nlimam acrmartins bivas makukha melo_mcr thepogoman vmarceau mfuhr tomhebbron eitanla1 voiklis jb44 kinop panisson anphony Adso mattjb phoenixzxl sWorgan czeller alanyang kaarsinogen diamantis pgastrein nolodie qwermish dragonrez shivaram tolosoft balicea ddahlem merazzle Borelli muraken lshaw gurkanbebek jaspervoskuilen rcrane ransombriggs idreams2 nkishan justforscraps Evangelia kb subhacom ethkim
	Computing communities in large networks using random walks [My Copy] (14 Dec 2004) by Matthieu Latapy, Pascal Pons posted to communities networks by Diego_Prada on 2008-02-29 17:20:33 as
	Network Brownian Motion: A New Method to Measure Vertex-Vertex Proximity and to Identify Communities and Subcommunities [My Copy] Computational Science - ICCS 2004 (2004), pp. 1062-1069. by Haijun Zhou, Reinhard Lipowsky posted to communities networks by Diego_Prada on 2008-02-29 17:18:31 as
	Distance, dissimilarity index, and network community structure [My Copy] Physical Review E, Vol. 67, No. 6. (10 June 2003), 061901. by Haijun Zhou posted to communities networks by Diego_Prada on 2008-02-29 17:15:49 as
	Network landscape from a Brownian particle's perspective [My Copy] Physical Review E, Vol. 67, No. 4. (21 April 2003), 041908. by Haijun Zhou posted to communities networks by Diego_Prada on 2008-02-29 17:14:06 as
	Detecting Fuzzy Community Structures in Complex Networks with a Potts Model [My Copy] Physical Review Letters, Vol. 93, No. 21. (2004) by Jörg Reichardt, Stefan Bornholdt posted to communities networks by Diego_Prada on 2008-02-24 19:09:36 as along with 7 people and 2 groups nolodie kubyaddi zufar phreeza fukken hannu marcio Network Analysis of Genes Regulated in Renal Diseases ThinkTank
	Modularity and community structure in networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 23. (6 June 2006), pp. 8577-8582. by M. E. J. Newman posted to networks communities chapt_cmn by Diego_Prada on 2008-02-21 13:14:38 as along with 34 people and 4 groups Sergey_gerbek RayRa houniao007 gagliol spool jago thegoose tnhh daforerog pdlug senseable-urb tomhebbron dakelley rsantana orahcio vtraag dartar aqeel ChaTo jfr yas balicea ddahlem cmm fukken kubyaddi adriandefroment gcalda hannu marcio phreeza carlk ellakat jjray complex networks T_lab FAB-lab ThinkTank
	Finding and evaluating community structure in networks [My Copy] Physical Review E, Vol. 69, No. 2. (Feb 2004), 026113. by M. E. J. Newman, M. Girvan posted to chapt_cmn communities networks by Diego_Prada on 2008-02-21 13:11:36 as along with 18 people and 1 group almadana lawraga senseable-urb diamantis rsantana panisson vtraag jyew muraken cgaugain davidecellai lshaw gcalda RobMills hannu carlk ilkert ddahlem ThinkTank
	Community structure in social and biological networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 12. (11 June 2002), pp. 7821-7826. by M. Girvan, M. E. J. Newman posted to chapt_cmn communities networks by Diego_Prada on 2008-02-21 13:08:23 as along with 44 people and 4 groups spool lawraga studentx ChaTo kubyaddi anhlc Adso orahcio dartar mattjb muraken cgaugain diamantis nolodie davidecellai qwermish pridkett korakot mrm rasca jtowle PiersYoung zqshen schaal shivaram yas lyongu herdivineshadow jirlong fwkroon adriandefroment gcalda noby andreacapocci Evangelia marcio pipkin stefanoallesina verdicchio compbio ellakat ganden chibatching jpbarrette Philosophy_of_Information Blog_and_Wiki_Research GraphVis T_lab
	Functional cartography of complex metabolic networks [My Copy] Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900. by Roger Guimera, Luis A. Nunes Amaral posted to communities networks rol_nodes by Diego_Prada on 2008-02-17 13:12:26 as along with 23 people and 4 groups schwartzjmc tomt21 lawraga Scis0000002 vtraag cgaugain pdelosri cswinburne camster dbk BioGeek Borelli lfriedl balajis alexg eweaver tny wnpx cjeans kdang carlk RobMills marcio streptomyces dbk-lab kdl Bioinformatics
	Finding Community Structure in Mega-scale Social Networks [My Copy] (8 Feb 2007) by Ken Wakita, Toshiyuki Tsurumi posted to chapt_cmn communities networks by Diego_Prada on 2008-02-17 13:10:25 as
	Construction of effective free energy landscape from single-molecule time series [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19297-19302. by Akinori Baba, Tamiki Komatsuzaki posted to communities networks free-energy cmn by Diego_Prada on 2008-02-17 12:51:10 as along with 7 people and 1 group victorclaessen hmk zwang cactus sobolevnrm arnaudriegert hsekiguc baker-group
	Topographical complexity of multidimensional energy landscapes [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 49. (5 December 2006), pp. 18551-18555. by Gareth J. Rylance, Roy L. Johnston, Yasuhiro Matsunaga, Chun-Biu Li, Akinori Baba, Tamiki Komatsuzaki posted to communities networks free-energy cmn by Diego_Prada on 2008-02-17 12:50:10 as
	Emergence of Communities in Weighted Networks [My Copy] Physical Review Letters, Vol. 99, No. 22. (2007) by Jussi M. Kumpula, Jukka P. Onnela, Jari Saramäki, Kimmo Kaski, János Kertész posted to communities networks by Diego_Prada on 2008-02-17 12:48:29 as along with 3 people Kovanen travieso sbianco

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free-energy	94
networks	66
short-peptides	63
chapt_cmn	62
hexapeptide	48
plos	47
md	41
communities	38
markov	35
stochastic_processes	34
gnm	32
cmn	31
pca	30
protein_dynamics	29
amino	28
protein_folding	28
amyloids	27
dialanine	27
md_history	26
articulo	21
complex_systems	21
coarse-grained	18
transition_path	17
beta-hairpin	16
hp_model	16
methods	16
dpca	15
proteins	15
force-fields	13
water	13
chapt_amino	12
statistical_mechanics	12
transition_states	10
clustering	8
experimental	8
first_passage	8
reaction_paths	8
markov_state_models	7
active_site	6
glass_transition	6
mutual-information	6
problems_fel_dof	6
rmsd	6
secondary_structure	6
struct_decorr	6
collective_motions	5
glycine	5
hot	5
kramers	5
langevin	5
mios	5
out_of_equilibrium	5
sampling	5
allostery	4
entropy	4
kinetic_models	4
mc	4
percolation	4
qha	4
alanine	3
dihedral	3
energy_landscape	3
rol_nodes	3
work_theorem	3
ala5	2
bayesian_analysis	2
conformational_entropy	2
fca	2
funnels	2
go	2
information	2
irreversibility	2
lanvegin	2
leas_action	2
non_markovian	2
probability_distributions	2
statistics	2
wavelets	2
aggregation	1
chain_interactions	1
discrete_breathers	1
enkaphalin	1
fibril_formation	1
flagellum	1
fre	1
hurst_exponent	1
information_theory	1
latex	1
mpi	1
nmr	1
nonequilibrium	1
opls	1
pendiente	1
protein_flexibility	1
relaxation_processes	1
review	1
statistical_models	1
t_dependence	1
temperature_dependence	1

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