Diego_Prada's pca [29 articles] Export

Recent papers added to Diego_Prada's library classified by the tag pca. You can also see everyone's pca.

	What is principal component analysis? [My Copy] Nature biotechnology, Vol. 26, No. 3. (March 2008), pp. 303-304. by Markus Ringnér posted to pca clustering by Diego_Prada on 2009-09-19 15:58:18 as along with 67 people and 3 groups tnhh ruvido ucbcjbm daforerog abellogin nguizard thegoose2 arsyed Zephyrus flips svozil VGreiff kaniko ssgong Yanno guhjy operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu rsantana sobolevnrm fryanpan kengg rvosa dekay23 adacier hpaces waghsk rchauhan pavanghatty kristgy jfr bibay2004 xingxu quianominorleo craigwilson06 ashko markusd dayjm dimka i-stevenson chrissp100 tharris ale mjoach HugoMarcelo jdiezperezj rrbarb Nici baker-group FAB-lab Bioinformatics
	Structuring and sampling complex conformation space: Weighted ensemble dynamics simulations [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 2. (2009), 026707. by Linchen Gong, Xin Zhou posted to pca free-energy cmn by Diego_Prada on 2009-09-17 19:04:45 as
	Detection of Functional Modes in Protein Dynamics [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000480. by Jochen S. Hub, Bert L. de Groot posted to pca gnm collective_motions by Diego_Prada on 2009-09-04 09:14:56 as along with 3 people sobolevnrm klexa zwang
	Multiple probes are required to explore and control the rugged energy landscape of RNA hairpins. [My Copy] Journal of the American Chemical Society, Vol. 130, No. 5. (6 February 2008), pp. 1538-1539. by C. Hyeon, D. Thirumalai posted to beta-hairpin free-energy pca protein_folding by Diego_Prada on 2009-06-15 16:05:55 as
	How Adequate are One- and Two-Dimensional Free Energy Landscapes for Protein Folding Dynamics? [My Copy] Physical Review Letters, Vol. 102, No. 23. (2009), 238102. by Gia G. Maisuradze, Adam Liwo, Harold A. Scheraga posted to protein_dynamics pca funnels free-energy energy_landscape dpca by Diego_Prada on 2009-06-15 09:51:22 as along with 1 person agrossfield
	Set-Oriented Dimension Reduction: Localizing Principal Component Analysis Via Hidden Markov Models [My Copy] Computational Life Sciences II (2006), pp. 74-85. by Illia Horenko, Johannes Schmidt-Ehrenberg, Christof Schütte posted to markov pca by Diego_Prada on 2009-05-30 20:14:05 as
	From simulation data to conformational ensembles: Structure and dynamics-based methods [My Copy] Journal of Computational Chemistry, Vol. 20, No. 16. (1999), pp. 1760-1774. by Wilhelm Huisinga, Christoph Best, Rainer Roitzsch, Christof Schütte, Frank Cordes posted to clustering cmn pca by Diego_Prada on 2009-05-30 19:58:33 as along with 2 people welliegirl thegoose
	Multidimensional Langevin modeling of biomolecular dynamics [My Copy] The Journal of Chemical Physics, Vol. 130, No. 3. (2009), 034106. by Rainer Hegger, Gerhard Stock posted to lanvegin md methods pca short-peptides by Diego_Prada on 2009-05-30 19:16:19 as along with 1 person and 1 group sobolevnrm baker-group
	On Estimation of a Probability Density Function and Mode [My Copy] The Annals of Mathematical Statistics, Vol. 33, No. 3. (1962), pp. 1065-1076. by Emanuel Parzen posted to pca statistics by Diego_Prada on 2009-03-30 16:27:50 as along with 4 people asterix77 b metamerist atbrew
	Essential dynamics of proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 17, No. 4. (December 1993), pp. 412-425. by Andrea Amadei, Antonius B. M. Linssen, Herman J. C. Berendsen posted to articulo pca by Diego_Prada on 2009-03-23 18:50:50 as along with 10 people and 1 group kazemi baaden aqeel yongzhao ttjoseph ffranca allmensch carlescorbi dimka nigham TSRI_MGL
	Principal coordinate analysis on a protein model [My Copy] The Journal of Chemical Physics, Vol. 110, No. 21. (1999), pp. 10606-10622. by Nuran Elmaci, Stephen R. Berry posted to articulo pca by Diego_Prada on 2009-03-23 17:45:21 as along with 1 person scampos
	A comparison of techniques for calculating protein essential dynamics [My Copy] Journal of Computational Chemistry, Vol. 18, No. 2. (1997), pp. 169-181. by D. M. F. Van Aalten, Bert L. de Groot, J. B. C. Findlay, H. J. C. Berendsen, A. Amadei posted to articulo dpca pca by Diego_Prada on 2009-03-23 17:37:59 as
	Conformational states and folding pathways of peptides revealed by principal-independent component analyses [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 3. (2007), pp. 579-592. by Phuong H. Nguyen posted to articulo hexapeptide pca by Diego_Prada on 2009-03-21 17:37:12 as
	Full correlation analysis of conformational protein dynamics [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 70, No. 9999. (2007), pp. 1294-1312. by Oliver F. Lange, Helmut Grubmüller posted to articulo md mutual-information pca by Diego_Prada on 2009-03-21 17:32:53 as along with 6 people and 1 group jeargle softsimu barry choonpeng sobolevnrm LamBras baker-group
	Algorithmic dimensionality reduction for molecular structure analysis [My Copy] The Journal of Chemical Physics, Vol. 129, No. 6. (2008), 064118. by Michael W. Brown, Shawn Martin, Sara N. Pollock, Evangelos A. Coutsias, Jean P. Watson posted to articulo free-energy pca by Diego_Prada on 2009-03-21 17:16:01 as
	Principal component analysis for protein folding dynamics [My Copy] Journal of Molecular Biology (15 October 2008) by G. Maisuradze, A. Liwo, H. Scheraga posted to articulo dpca md pca by Diego_Prada on 2009-03-21 17:04:23 as along with 4 people and 1 group scampos phoenixzxl barry paulschlesinger structural_bioinformatics
	Comment on: "Energy landscape of a small peptide revealed by dihedral angle principal component analysis" [My Copy] Proteins (2 February 2006) by Konrad Hinsen posted to articulo dpca pca by Diego_Prada on 2009-03-21 16:48:59 as along with 1 person kentsis
	Reply to the comment on ldquoEnergy landscape of a small peptide revealed by dihedral angle principal component analysisrdquo [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 64, No. 3. (2006), pp. 798-799. by Yuguang Mu, Phuong Nguyen, Gerhard Stock posted to articulo dpca pca by Diego_Prada on 2009-03-21 16:45:56 as
	Free energy landscape of a biomolecule in dihedral principal component space: sampling convergence and correspondence between structures and minima. [My Copy] Proteins, Vol. 67, No. 3. (15 May 2007), pp. 569-578. by G. G. Maisuradze, D. M. Leitner posted to articulo pca short-peptides by Diego_Prada on 2008-12-19 11:25:15 as along with 2 people scampos onufriev
	Construction of the free energy landscape of biomolecules via dihedral angle principal component analysis [My Copy] The Journal of Chemical Physics, Vol. 128, No. 24. (2008) by Alexandros Altis, Moritz Otten, Phuong H. Nguyen, Rainer Hegger, Gerhard Stock posted to articulo dpca free-energy hexapeptide pca by Diego_Prada on 2008-12-16 11:16:42 as along with 2 people scampos agrossfield
	Energy landscape of a small peptide revealed by dihedral angle principal component analysis [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 58, No. 1. (2005), pp. 45-52. by Yuguang Mu, Phuong H. Nguyen, Gerhard Stock posted to articulo dpca hexapeptide md pca by Diego_Prada on 2008-09-24 12:25:09 as
	Dihedral angle principal component analysis of molecular dynamics simulations [My Copy] The Journal of Chemical Physics, Vol. 126, No. 24. (2007) by Alexandros Altis, Phuong H. Nguyen, Rainer Hegger, Gerhard Stock posted to articulo dpca md pca protein_dynamics by Diego_Prada on 2008-09-24 11:39:38 as along with 4 people and 1 group scampos barry ruvido nh structural_bioinformatics
	Complexity of free energy landscapes of peptides revealed by nonlinear principal component analysis [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 4. (2006), pp. 898-913. by Phuong H. Nguyen posted to free-energy hexapeptide pca by Diego_Prada on 2008-07-04 18:29:56 as along with 2 people nickolay ladab
	The Meaning of Component Analysis: Decomposition of the Free Energy in Terms of Specific Interactions [My Copy] Journal of Molecular Biology, Vol. 254, No. 5. (15 December 1995), pp. 801-807. by S. Boresch, M. Karplus posted to free-energy pca by Diego_Prada on 2008-02-19 10:11:40 as along with 1 person dmobley
	Comparison of mode analyses at different resolutions applied to nucleic acid systems. [My Copy] Biophys J, Vol. 89, No. 5. (November 2005), pp. 2939-2949. by A. W. Van Wynsberghe, Q. Cui posted to coarse-grained gnm pca cmn by Diego_Prada on 2008-02-18 18:18:29 as along with 2 people aqeel eckart_bindewald
	Harmonic and anharmonic aspects in the dynamics of BPTI: A normal mode analysis and principal component analysis [My Copy] Protein Sci, Vol. 3, No. 6. (1 June 1994), pp. 936-943. by S. Hayward, A. Kitao, N. Go posted to gnm pca by Diego_Prada on 2008-02-18 18:15:23 as along with 1 person saravan
	Collective deformations in proteins determined by a mode analysis of molecular dynamics trajectories [My Copy] Polymer, Vol. 43, No. 2. (January 2002), pp. 431-439. by Pemra Doruker, Ivet Bahar, Canan Baysal, Burak Erman posted to gnm pca protein_dynamics by Diego_Prada on 2008-02-18 17:48:28 as
	Estimation of absolute and relative entropies of macromolecules using the covariance matrix [My Copy] Chemical Physics Letters, Vol. 215, No. 6. (17 December 1993), pp. 617-621. by J. Schlitter posted to pca by Diego_Prada on 2008-02-18 17:24:15 as along with 1 person rpetrenko
	Dynamics of essential collective motions in proteins: Theory [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 76, No. 5. (2007) by Maria Stepanova posted to pca protein_dynamics proteins by Diego_Prada on 2008-02-17 12:43:10 as along with 2 people and 1 group choonpeng sobolevnrm baker-group

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free-energy	87
networks	66
short-peptides	62
chapt_cmn	61
hexapeptide	48
plos	47
md	41
communities	38
markov	35
stochastic_processes	34
cmn	29
pca	29
protein_dynamics	29
protein_folding	27
amino	26
amyloids	26
md_history	26
dialanine	25
gnm	25
articulo	21
complex_systems	21
coarse-grained	18
hp_model	16
beta-hairpin	15
dpca	15
proteins	15
methods	14
transition_path	13
water	13
chapt_amino	12
force-fields	12
statistical_mechanics	12
clustering	8
experimental	8
first_passage	8
reaction_paths	7
transition_states	7
active_site	6
glass_transition	6
mutual-information	6
struct_decorr	6
glycine	5
hot	5
kramers	5
langevin	5
mios	5
out_of_equilibrium	5
rmsd	5
secondary_structure	5
allostery	4
entropy	4
kinetic_models	4
mc	4
percolation	4
qha	4
collective_motions	3
dihedral	3
energy_landscape	3
rol_nodes	3
work_theorem	3
ala5	2
alanine	2
bayesian_analysis	2
fca	2
funnels	2
go	2
information	2
irreversibility	2
lanvegin	2
leas_action	2
non_markovian	2
statistics	2
wavelets	2
chain_interactions	1
conformational_entropy	1
discrete_breathers	1
enkaphalin	1
flagellum	1
hurst_exponent	1
information_theory	1
latex	1
markov_state_models	1
mpi	1
nmr	1
nonequilibrium	1
opls	1
pendiente	1
protein_flexibility	1
relaxation_processes	1
review	1
statistical_models	1
t_dependence	1

Diego_Prada's pca [29 articles] Export

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