Diego_Prada's stochastic_processes [34 articles] Export

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	New method to analyze simulations of activated processes [My Copy] The Journal of Chemical Physics, Vol. 126, No. 13. (2007), 134103. by Jan Wedekind, Reinhard Strey, David Reguera posted to stochastic_processes kinetic_models free-energy first_passage by Diego_Prada on 2009-09-15 17:23:41 as along with 1 person janw
	Entropy production and the arrow of time [My Copy] New Journal of Physics, Vol. 11, No. 7. (2009), 073008. by J. M. R. Parrondo, Broeck, R. Kawai posted to work_theorem stochastic_processes irreversibility entropy by Diego_Prada on 2009-09-15 16:57:51 as along with 1 person pak
	The “footprints” of irreversibility [My Copy] EPL (Europhysics Letters), Vol. 82, No. 5. (2008), 50002. by A. Gomez-Marin, J. M. R. Parrondo, Broeck posted to work_theorem stochastic_processes irreversibility by Diego_Prada on 2009-09-15 16:51:09 as
	Dissipation: The Phase-Space Perspective [My Copy] Physical Review Letters, Vol. 98, No. 8. (2007), 080602. by R. Kawai, J. M. R. Parrondo, C. Van den Broeck posted to work_theorem stochastic_processes out_of_equilibrium free-energy by Diego_Prada on 2009-09-15 16:47:43 as along with 1 person madhadron
	Extracting macroscopic dynamics: model problems and algorithms [My Copy] Nonlinearity, Vol. 17, No. 6. (2004), pp. R55-R127. by Raz, Andrew Stuart posted to markov methods stochastic_processes by Diego_Prada on 2009-05-30 18:54:10 as along with 2 people and 1 group sobolevnrm Borelli baker-group
	Reduced Stochastic Models for Complex Molecular Systems [My Copy] Computing and Visualization in Science, Vol. 9, No. 2. (1 July 2006), pp. 89-102. by Illia Horenko, Evelyn Dittmer, Christof Schütte posted to bayesian_analysis markov stochastic_processes by Diego_Prada on 2009-05-30 18:47:04 as
	Computing Best Transition Pathways in High-Dimensional Dynamical Systems: Application to the Alpha[sub L] ≤ftrightharpoons Beta ≤ftrightharpoons Alpha[sub R] Transitions in Octaalanine [My Copy] Multiscale Modeling & Simulation, Vol. 5, No. 2. (2006), pp. 393-419. by Frank Noé, Marcus Oswald, Gerhard Reinelt, Stefan Fischer, Jeremy C. Smith posted to hexapeptide markov statistical_mechanics stochastic_processes transition_path by Diego_Prada on 2009-05-29 19:05:53 as
	Solving Chemical Master Equations by an Adaptive Wavelet Method [My Copy] In American Institute of Physics Conference Series, Vol. 1048 (September 2008), pp. 290-293. by T. jahnke, S. galan posted to stochastic_processes wavelets by Diego_Prada on 2009-05-29 18:57:01 as along with 2 people cjhall thegoose
	An Averaging Principle for Fast Degrees of Freedom Exhibiting Long-Term Correlations [My Copy] Multiscale Modeling & Simulation, Vol. 2, No. 3. (2004), pp. 501-526. by Christof Schütte, Jessika Walter, Carsten Hartmann, Wilhelm Huisinga posted to cmn free-energy markov stochastic_processes struct_decorr by Diego_Prada on 2009-05-29 18:19:26 as
	Transition Path Theory for Markov Jump Processes [My Copy] Multiscale Modeling & Simulation, Vol. 7, No. 3. (2009), pp. 1192-1219. by Philipp Metzner, Christof Schütte, Eric V. Eijnden posted to markov stochastic_processes by Diego_Prada on 2009-05-29 18:16:52 as
	HOW WELL CAN SIMULATION PREDICT PROTEIN FOLDING KINETICS AND THERMODYNAMICS? [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 34, No. 1. (29 October 2005), pp. 43-69. by Christopher D. Snow, Eric J. Sorin, Young M. Rhee, Vijay S. Pande posted to md methods protein_folding statistical_mechanics stochastic_processes by Diego_Prada on 2009-04-30 12:01:14 as along with 9 people amphibina flbarroso doktornoe dgront blackbart allmensch saunders evanse toerst
	THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method [My Copy] Journal of Computational Chemistry, Vol. 13, No. 8. (1992), pp. 1011-1021. by Shankar Kumar, John M. Rosenberg, Djamal Bouzida, Robert H. Swendsen, Peter A. Kollman posted to free-energy md md_history methods statistical_mechanics stochastic_processes by Diego_Prada on 2009-04-05 18:20:54 as along with 11 people and 1 group jrperillaj edws stephenbond dfgreen A_Coletta_Thesis sunnytov dgront sikorski jwagoner bransfop allmensch Structural Biology Group TorVergata
	Replica-exchange molecular dynamics method for protein folding [My Copy] Chemical Physics Letters, Vol. 314, No. 1-2. (26 November 1999), pp. 141-151. by Y. Sugita posted to md md_history methods statistical_mechanics stochastic_processes by Diego_Prada on 2009-04-05 17:41:37 as along with 8 people and 1 group chemrahul82 tovrstra oteri Sylvain_Prigent andreasauerwein dgront allmensch rulix Structural Biology Group TorVergata
	Thermodynamic fluctuations in protein molecules [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 73, No. 8. (August 1976), pp. 2740-2741. by A. Cooper posted to md_history statistical_mechanics stochastic_processes by Diego_Prada on 2009-04-05 17:01:23 as
	The Langevin Equation [My Copy] posted to lanvegin stochastic_processes by Diego_Prada on 2009-03-24 11:41:49 as
	Extracting macroscopic stochastic dynamics: Model problems [My Copy] Communications on Pure and Applied Mathematics, Vol. 56, No. 2. (2003), pp. 234-269. by Wilhelm Huisinga, Christof Schütte, Andrew M. Stuart posted to stochastic_processes non_markovian markov coarse-grained chapt_cmn by Diego_Prada on 2009-03-09 17:53:37 as
	Likelihood-Based Estimation of Multidimensional Langevin Models and Its Application to Biomolecular Dynamics [My Copy] Multiscale Modeling & Simulation, Vol. 7, No. 2. (2008), pp. 731-773. by Illia Horenko, Christof Schütte posted to free-energy langevin short-peptides statistical_mechanics stochastic_processes by Diego_Prada on 2009-03-07 12:46:38 as along with 1 person gardenes
	Efficient computation of the first passage time distribution of the generalized master equation by steady-state relaxation [My Copy] The Journal of Chemical Physics, Vol. 124, No. 5. (2006) by David Shalloway, Anton K. Faradjian posted to first_passage stochastic_processes by Diego_Prada on 2009-03-06 16:18:45 as
	Foldamer dynamics expressed via Markov state models. II. State space decomposition [My Copy] The Journal of Chemical Physics, Vol. 123, No. 11. (2005) by Sidney P. Elmer, Sanghyun Park, Vijay S. Pande posted to free-energy markov short-peptides stochastic_processes by Diego_Prada on 2009-03-03 12:09:47 as
	Foldamer dynamics expressed via Markov state models. I. Explicit solvent molecular-dynamics simulations in acetonitrile, chloroform, methanol, and water [My Copy] The Journal of Chemical Physics, Vol. 123, No. 11. (2005) by Sidney P. Elmer, Sanghyun Park, Vijay S. Pande posted to free-energy markov short-peptides stochastic_processes by Diego_Prada on 2009-03-03 12:06:39 as along with 1 person toerst
	Testing lumpability in Markov chains [My Copy] Statistics & Probability Letters, Vol. 64, No. 1. (01 August 2003), pp. 17-23. by R. W. Jernigan, R. H. Baran posted to chapt_cmn markov plos statistical_mechanics stochastic_processes by Diego_Prada on 2009-02-19 19:03:03 as
	Validation of Markov state models using Shannon's entropy [My Copy] The Journal of Chemical Physics, Vol. 124, No. 5. (2006) by Sanghyun Park, Vijay S. Pande posted to chapt_cmn entropy markov plos stochastic_processes by Diego_Prada on 2009-02-19 18:23:05 as along with 1 person toerst
	Describing Protein Folding Kinetics by Molecular Dynamics Simulations. 2. Example Applications to Alanine Dipeptide and a β-Hairpin Peptide [My Copy] J. Phys. Chem. B, Vol. 108, No. 21. (27 May 2004), pp. 6582-6594. by W. C. Swope, J. W. Pitera, F. Suits, et al.M. Pitman, M. Eleftheriou, B. G. Fitch, R. S. Germain, A. Rayshubski, T. J. C. Ward, Y. Zhestkov, R. Zhou posted to beta-hairpin hexapeptide markov md stochastic_processes by Diego_Prada on 2009-02-16 11:17:38 as along with 1 person toerst
	Describing Protein Folding Kinetics by Molecular Dynamics Simulations. 1. Theory [My Copy] J. Phys. Chem. B, Vol. 108, No. 21. (27 May 2004), pp. 6571-6581. by W. C. Swope, J. W. Pitera, F. Suits posted to chapt_cmn free-energy markov md plos protein_dynamics stochastic_processes by Diego_Prada on 2009-02-16 11:14:57 as along with 2 people mtw apaydin
	Remarks on non-Markov processes [My Copy] BRAZILIAN JOURNAL OF PHYSICS, Vol. 28, No. 2. (1998) by N. G. van Kampen posted to chapt_cmn langevin markov plos stochastic_processes by Diego_Prada on 2009-02-13 11:52:05 as
	Stochastic Processes in Physics and Chemistry (North-Holland Personal Library) [My Copy] (01 July 2001) by N. G. van Kampen posted to chapt_cmn kramers langevin markov plos statistical_mechanics stochastic_processes by Diego_Prada on 2009-02-13 11:41:48 as along with 2 people ddcttrl madhadron
	Six out of equilibrium lectures [My Copy] (18 Jan 2009) by Jorge Kurchan posted to out_of_equilibrium statistical_mechanics stochastic_processes by Diego_Prada on 2009-01-19 10:27:40 as along with 8 people guygurari dbikard jjray ansobol yonyoni proportional szirmai jlidmar
	Coarse Master Equations for Peptide Folding Dynamics [My Copy] J. Phys. Chem. B (31 January 2008) by N. V. Buchete, G. Hummer posted to chapt_cmn hexapeptide markov plos stochastic_processes by Diego_Prada on 2008-12-16 16:27:49 as along with 3 people and 1 group apaydin ruvido sobolevnrm baker-group
	On mean residence and first passage times in finite one-dimensional systems [My Copy] The Journal of Chemical Physics, Vol. 109, No. 13. (1998), pp. 5187-5193. by Arie B. Haim, Joseph Klafter posted to markov stochastic_processes cmn by Diego_Prada on 2008-05-10 11:47:32 as
	Some further applications of discrete path sampling to cluster isomerization [My Copy] Molecular Physics, pp. 891-908. by David J. Wales posted to free-energy stochastic_processes by Diego_Prada on 2008-05-07 15:34:07 as
	Discrete path sampling [My Copy] Molecular Physics, pp. 3285-3305. by D. J. Wales posted to free-energy stochastic_processes by Diego_Prada on 2008-05-07 15:32:10 as
	Statistically optimal analysis of samples from multiple equilibrium states [My Copy] (9 Jan 2008) by Michael R. Shirts, John D. Chodera posted to markov protein_dynamics stochastic_processes by Diego_Prada on 2008-03-30 16:14:48 as along with 1 person and 1 group sobolevnrm baker-group
	Maximum entropy change and least action principle for nonequilibrium systems [My Copy] (8 Sep 2004) by Qiuping A. Wang posted to information leas_action stochastic_processes by Diego_Prada on 2008-03-05 17:28:41 as along with 2 people scis0000001 Scis0000002
	Stochastic embedding of dynamical systems [My Copy] (30 Sep 2005) by Jacky Cresson, Sébastien Darses posted to markov stochastic_processes by Diego_Prada on 2008-03-05 17:23:06 as

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amino	26
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Diego_Prada's stochastic_processes [34 articles] Export

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