Diego_Prada's transition_states [12 articles] Export

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	Estimation of protein folding probability from equilibrium simulations [My Copy] The Journal of Chemical Physics, Vol. 122, No. 18. (2005), 184901. by Francesco Rao, Giovanni Settanni, Enrico Guarnera, Amedeo Caflisch posted to transition_states protein_folding free-energy cmn by Diego_Prada on 2009-11-26 18:21:55 as
	Kinetic analysis of molecular dynamics simulations reveals changes in the denatured state and switch of folding pathways upon single-point mutation of a beta-sheet miniprotein [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 70, No. 4. (2008), pp. 1185-1195. by Stefanie Muff, Amedeo Caflisch posted to transition_states free-energy cmn chapt_cmn by Diego_Prada on 2009-11-26 17:24:35 as along with 1 person RamuAnandakrishnan
	The Structural Coupling between ATPase Activation and Recovery Stroke in the Myosin II Motor [My Copy] Structure, Vol. 15, No. 7. (18 July 2007), pp. 825-837. by Sampath Koppole, Jeremy C. Smith, Stefan Fischer posted to transition_states transition_path problems_fel_dof chapt_cmn by Diego_Prada on 2009-11-23 12:11:49 as along with 2 people ckmyo cactus
	Estimating the sampling error: Distribution of transition matrices and functions of transition matrices for given trajectory data [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 2. (2009), 021106. by Philipp Metzner, Frank Noé, Christof Schütte posted to transition_states sampling markov_state_models by Diego_Prada on 2009-11-19 19:58:42 as along with 1 person agrossfield
	Identification of the protein folding transition state from molecular dynamics trajectories [My Copy] The Journal of Chemical Physics, Vol. 130, No. 12. (2009), 125104. by S. Muff, A. Caflisch posted to transition_states sampling markov_state_models free-energy by Diego_Prada on 2009-11-19 18:13:46 as
	Efficient exploration of energy landscapes [My Copy] (14 Oct 2009) by Martin Mann, Konstantin Klemm posted to transition_states mutual-information mc markov free-energy by Diego_Prada on 2009-10-20 19:21:50 as along with 2 people Fernando_FF apocapoc
	Pathways for Conformational Change in Nitrogen Regulatory Protein C from Discrete Path Sampling [My Copy] The Journal of Physical Chemistry B, Vol. 112, No. 8. (1 February 2008), pp. 2456-2465. by Mey Khalili, David J. Wales posted to first_passage free-energy protein_dynamics qha reaction_paths transition_path transition_states by Diego_Prada on 2009-07-02 12:02:29 as
	Refined kinetic transition networks for the GB1 hairpin peptide [My Copy] Phys. Chem. Chem. Phys., Vol. 11, No. 18. (2009), pp. 3341-3354. by Joanne M. Carr, David J. Wales posted to beta-hairpin first_passage free-energy hexapeptide protein_dynamics protein_folding qha reaction_paths short-peptides transition_path transition_states by Diego_Prada on 2009-07-02 11:55:15 as
	Calculating rate constants and committor probabilities for transition networks by graph transformation [My Copy] The Journal of Chemical Physics, Vol. 130, No. 20. (2009), 204111. by David J. Wales posted to reaction_paths transition_path transition_states by Diego_Prada on 2009-06-09 11:29:56 as
	A note on two problems in connexion with graphs [My Copy] Numerische Mathematik, Vol. 1, No. 1. (1 December 1959), pp. 269-271. by E. W. Dijkstra posted to transition_path transition_states by Diego_Prada on 2009-06-09 11:21:36 as along with 7 people jrperillaj Borelli ben500 hp2oo1 antonkratz mpotamias dylanwalker
	Temperature dependent reaction coordinates [My Copy] The Journal of Chemical Physics, Vol. 112, No. 13. (2000), pp. 5539-5545. by Ron Elber, David Shalloway posted to reaction_paths transition_path transition_states by Diego_Prada on 2009-06-08 21:13:47 as
	A statistical method for identifying transition states in high dimensional problems [My Copy] The Journal of Chemical Physics, Vol. 85, No. 9. (1986), pp. 5045-5048. by Lawrence R. Pratt posted to reaction_paths transition_path transition_states by Diego_Prada on 2009-06-08 21:04:01 as along with 1 person jrperillaj

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free-energy	101
chapt_cmn	71
networks	66
short-peptides	63
hexapeptide	48
plos	47
md	41
communities	38
markov	35
protein_folding	35
stochastic_processes	34
cmn	33
gnm	32
protein_dynamics	31
pca	30
amino	28
amyloids	27
dialanine	27
md_history	27
methods	27
transition_path	26
articulo	21
complex_systems	21
coarse-grained	18
beta-hairpin	16
hp_model	16
dpca	15
proteins	15
force-fields	13
reaction_paths	13
water	13
chapt_amino	12
statistical_mechanics	12
transition_states	12
clustering	8
experimental	8
first_passage	8
markov_state_models	7
problems_fel_dof	7
active_site	6
glass_transition	6
mutual-information	6
rmsd	6
sampling	6
secondary_structure	6
struct_decorr	6
collective_motions	5
glycine	5
hot	5
kramers	5
langevin	5
mios	5
out_of_equilibrium	5
review	5
allostery	4
entropy	4
kinetic_models	4
mc	4
percolation	4
qha	4
alanine	3
dihedral	3
energy_landscape	3
rol_nodes	3
work_theorem	3
ala5	2
bayesian_analysis	2
conformational_entropy	2
fca	2
funnels	2
go	2
information	2
irreversibility	2
lanvegin	2
leas_action	2
non_markovian	2
probability_distributions	2
statistics	2
wavelets	2
aggregation	1
chain_interactions	1
discrete_breathers	1
enkaphalin	1
fibril_formation	1
flagellum	1
fre	1
hurst_exponent	1
information_theory	1
latex	1
mpi	1
nmr	1
nonequilibrium	1
opls	1
pendiente	1
protein_flexibility	1
relaxation_processes	1
short_time_simus	1
statistical_models	1
t_dependence	1
temperature_dependence	1

Diego_Prada's transition_states [12 articles] Export

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