Dulce's library 55 articles Export

	Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies1 [My Copy] Journal of Molecular Biology, Vol. 281, No. 5. (04 September 1998), pp. 827-842. by J. van Helden, B. André, J. Collado-Vides posted to regulatory oligonucleotoide by Dulce on 2009-11-20 17:22:05 as along with 6 people wowalz druvus dquest johncumbers smiddha ale
	Unsupervised Learning of Multiple Motifs in Biopolymers Using Expectation Maximization [My Copy] Mach. Learn., Vol. 21, No. 1-2. (1 October 1995), pp. 51-80. by Timothy L. Bailey, Charles Elkan posted to regulatory by Dulce on 2009-11-20 17:05:01 as along with 1 person hendrik85
	Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. [My Copy] Nature biotechnology, Vol. 16, No. 10. (October 1998), pp. 939-945. by F. P. Roth, J. D. Hughes, P. W. Estep, G. M. Church posted to unaligned regulatory by Dulce on 2009-11-20 17:02:07 as along with 4 people and 1 group wowalz dquest kengg isimpson Plantandetc
	WORDUP: an efficient algorithm for discovering statistically significant patterns in DNA sequences [My Copy] Nucl. Acids Res., Vol. 20, No. 11. (11 June 1992), pp. 2871-2875. by Graziano Pesole, Nicola Prunella, Sabino Liuni, Marcella Attimonelli, Cecilia Saccone posted to regulatory by Dulce on 2009-11-20 16:37:31 as along with 1 person wowalz
	Limitations and potentials of current motif discovery algorithms [My Copy] Nucl. Acids Res., Vol. 33, No. 15. (2 September 2005), pp. 4899-4913. by Jianjun Hu, Bin Li, Daisuke Kihara posted to no-tag by Dulce on 2009-11-19 15:23:58 as along with 6 people and 1 group farhat wowalz Stew bryankr gpalidwor dquest Bioinformatics - CRUK
	Computing exact P-values for DNA motifs [My Copy] Bioinformatics, Vol. 23, No. 5. (1 March 2007), pp. 531-537. by Jing Zhang, Bo Jiang, Ming Li, John Tromp, Xuegong Zhang, Michael Q. Zhang posted to p-value by Dulce on 2009-11-18 01:11:20 as along with 3 people GustavoLacerda Ema zhouyu
	SVMotif: A Machine Learning Motif Algorithm [My Copy] Machine Learning and Applications, 2007. ICMLA 2007. Sixth International Conference on (15 December 2007), pp. 573-580. by M. Kon, Yue Fan, D. Holloway, C. DeLisi posted to suport_vector_machine motif machine-learning by Dulce on 2009-11-17 10:06:12 as
	GAME: detecting cis-regulatory elements using a genetic algorithm [My Copy] Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1577-1584. by Zhi Wei, Shane T. Jensen posted to genetic_algorithm by Dulce on 2009-11-17 00:04:23 as along with 2 people wowalz xili03
	A statistical model for locating regulatory regions in genomic DNA [My Copy] Journal of Molecular Biology, Vol. 268, No. 1. (25 April 1997), pp. 8-14. by E. Crowley posted to no-tag by Dulce on 2009-11-16 05:15:29 as along with 1 person maximilianh
	Conservation of DNA Regulatory Motifs and Discovery of New Motifs in Microbial Genomes [My Copy] Genome Research, Vol. 10, No. 6. (1 June 2000), pp. 744-757. by Abigail M. McGuire, Jason D. Hughes, George M. Church posted to regulatory motif by Dulce on 2009-11-10 12:05:30 as along with 2 people and 1 group wowalz adepace EisenLab
	A survey of DNA motif finding algorithms. [My Copy] BMC bioinformatics, Vol. 8 Suppl 7, No. Suppl 7. (2007) by Modan K. Das, Ho-Kwok K. Dai posted to regulatory by Dulce on 2009-10-29 16:16:23 as along with 17 people and 2 groups lusk wowalz svenrahmann isimpson daveGerrard coldmeadow druvus Stew emptyhb dquest nklee maximilianh yevishere csdhwang brant xili03 pradiptaray BergmanLab Bioinformatics - CRUK
	Consensus sequence Zen. [My Copy] Appl Bioinformatics, Vol. 1, No. 3. (2002), pp. 111-119. by Thomas D. Schneider posted to consensus by Dulce on 2009-10-26 15:59:10 as along with 1 person and 1 group biplabbose Myxo group
	Computer-assisted prediction, classification, and delimitation of protein binding sites in nucleic acids [My Copy] Nucl. Acids Res., Vol. 21, No. 7. (11 April 1993), pp. 1655-1664. by Kornelie Frech, Gunter Herrmann, Thomas Werner posted to binding_sites by Dulce on 2009-09-28 23:31:49 as
	Applied bioinformatics for the identification of regulatory elements [My Copy] Nature Reviews Genetics, Vol. 5, No. 4. (01 April 2004), pp. 276-287. by Wyeth W. Wasserman, Albin Sandelin posted to regulatory_elements by Dulce on 2009-09-23 16:23:37 as along with 4 people cirillod mdimmic mycitation moborg
	Quantifying similarity between motifs [My Copy] Genome Biology, Vol. 8, No. 2. (26 February 2007), R24. by Shobhit Gupta, John Stamatoyannopoulos, Timothy Bailey, William Noble posted to motif by Dulce on 2009-09-17 16:35:47 as along with 6 people and 1 group jlike maximilianh cwbrown grahamc nklee gracio EisenLab
	Unsupervised Learning of Multiple Motifs in Biopolymers Using Expectation Maximization [My Copy] Machine Learning, Vol. 21, No. 1. (1 October 1995), pp. 51-80. by Timothy L. Bailey, Charles Elkan posted to meme expectation_maximization by Dulce on 2009-09-08 20:57:12 as
	YMF: a program for discovery of novel transcription factor binding sites by statistical overrepresentation [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3586-3588. by Saurabh Sinha, Martin Tompa posted to binding_sites by Dulce on 2009-09-08 20:46:42 as along with 2 people wowalz yylin
	An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. [My Copy] Nature biotechnology, Vol. 20, No. 8. (August 2002), pp. 835-839. by X. Shirley Liu, Douglas L. Brutlag, Jun S. Liu posted to binding_sites by Dulce on 2009-08-25 18:44:02 as along with 5 people troels_marstrand opheliav dquest yevishere xili03
	MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. [My Copy] Nucleic acids research, Vol. 23, No. 23. (11 December 1995), pp. 4878-4884. by K. Quandt, K. Frech, H. Karas, E. Wingender, T. Werner posted to sequence-data matrix by Dulce on 2009-08-25 18:39:02 as along with 1 person ea
	Functional classification of proteins by pattern discovery and top-down clustering of primary sequences [My Copy] IBM Syst. J., Vol. 40, No. 2. (2001), pp. 379-393. by A. H. Liu, A. Califano posted to pattern-discovery motif clustering by Dulce on 2009-08-25 17:06:06 as along with 1 group Gene Regulation
	DNA binding sites: representation and discovery [My Copy] Bioinformatics, Vol. 16, No. 1. (1 January 2000), pp. 16-23. by Gary D. Stormo posted to binding_sites by Dulce on 2009-08-18 23:48:26 as along with 6 people stharward austin_mcdonald ajbattle erdos emptyhb kaarsinogen
	Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes. [My Copy] Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3832-3839. by S. T. Jensen, L. Shen, J. S. Liu posted to clustering co-regulated by Dulce on 2009-07-09 00:42:06 as along with 1 person mdimmic
	Fuzzy C-Means Based DNA Motif Discovery [My Copy] Advanced Intelligent Computing Theories and Applications. With Aspects of Theoretical and Methodological Issues In ICIC '08: Proceedings of the 4th international conference on Intelligent Computing (2008), pp. 189-195. by Mustafa Karabulut, Turgay Ibrikci posted to clustering fuzzycmeans by Dulce on 2009-07-08 21:56:04 as along with 1 person wowalz
	Clustering Algorithms for ITS Sequence Data with Alignment Metrics [My Copy] AI 2006: Advances in Artificial Intelligence (2006), pp. 1027-1031. by Andrei Kelarev, Byeong Kang, Dorothy Steane posted to clustering by Dulce on 2009-07-08 21:53:39 as
	Probabilistic clustering of sequences: Inferring new bacterial regulons by comparative genomics [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 11. (28 May 2002), pp. 7323-7328. by Erik van Nimwegen, Mihaela Zavolan, Nikolaus Rajewsky, Eric D. Siggia posted to clustering probabilistic regulons by Dulce on 2009-07-08 21:38:20 as along with 1 person roys
	A Cluster Refinement Algorithm for Motif Discovery [My Copy] IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 99, No. 1. (5555) by Gang Li, Tak M. Chan, Kwong S. Leung, Kin H. Lee posted to cluster np-hard by Dulce on 2009-07-07 01:50:27 as
	Cluster analysis for gene expression data: a survey [My Copy] Knowledge and Data Engineering, IEEE Transactions on, Vol. 16, No. 11. (2004), pp. 1370-1386. by Daxin Jiang, Chun Tang, Aidong Zhang posted to clustering by Dulce on 2009-06-19 23:23:45 as along with 5 people bozdagd bayesian archroad dps AbnerCYH
	A guided tour to approximate string matching [My Copy] ACM Comput. Surv., Vol. 33, No. 1. (March 2001), pp. 31-88. by Gonzalo Navarro posted to string-matching by Dulce on 2009-06-18 17:14:50 as along with 5 people mogwaing federico_boschetti mthomure hugovdm sugarexpletive
	How does DNA sequence motif discovery work? [My Copy] Nature Biotechnology, Vol. 24, No. 8., pp. 959-961. by Patrik D'Haeseleer posted to discovery motif by Dulce on 2009-06-18 17:10:37 as along with 9 people and 1 group wowalz cambray bryankr okarsligil Evangelia antonkratz xi03 idonaldson isimpson Bioinformatics
	Assessing Clusters and Motifs from Gene Expression Data [My Copy] Genome Res., Vol. 11, No. 1. (1 January 2001), pp. 112-123. by Lars M. Jakt, Liang Cao, Kathryn S. Cheah, David K. Smith posted to no-tag by Dulce on 2009-06-18 17:09:38 as along with 1 person nuin
	Gene discovery in DNA sequences [My Copy] Intelligent Systems and their Applications, IEEE In Intelligent Systems and their Applications, IEEE, Vol. 14, No. 6. (1999), pp. 44-48. by S. L. Salzberg posted to discovery gene by Dulce on 2009-06-18 17:04:20 as
	Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals [My Copy] Nature, Vol. aop, No. current. (27 February 2005) by Xiaohui Xie, Jun Lu, E. J. Kulbokas, et al.Todd R. Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S. Lander, Manolis Kellis posted to no-tag by Dulce on 2009-06-17 18:55:19 as along with 28 people and 4 groups wowalz maximilianh_otx hagechouchin443 sterovetta kieran101 snuppepuppan BioGeek briann jtextori tmmurali okarsligil jfr balajis lyongu eckart_bindewald mtagaya adepace fisherp nickluscombe panetebrother smiddha franklin oscarluoinau heliopais ale emptyhb maralena mariakmejia Bioinformatics EisenLab microRNA EBI-regulation
	Whole-genome discovery of transcription factor binding sites by network-level conservation. [My Copy] Genome research, Vol. 14, No. 1. (1 January 2004), pp. 99-108. by M. Pritsker, Y. C. Liu, M. A. Beer, S. Tavazoie posted to no-tag by Dulce on 2009-06-17 18:41:37 as along with 5 people alhufton aprasad kaarsinogen koller xili03
	Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach. [My Copy] Genome Biol, Vol. 6, No. 2. (2005) by O. Elemento, S. Tavazoie posted to clustering by Dulce on 2009-06-17 18:33:17 as along with 4 people and 1 group leelarcombe indigoviolet grahamc nklee EisenLab
	Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering. [My Copy] Genome biology, Vol. 3, No. 11. (10 October 2002) by Audrey P. Gasch, Michael B. Eisen posted to clustering fuzzy by Dulce on 2009-06-17 18:02:59 as along with 4 people robert85 tmmurali tabu tvdbulck
	Sequencing and comparison of yeast species to identify genes and regulatory elements [My Copy] Nature, Vol. 423, No. 6937. (15 May 2003), pp. 241-254. by Manolis Kellis, Nick Patterson, Matthew Endrizzi, Bruce Birren, Eric S. Lander posted to clustering regulatory by Dulce on 2009-06-17 17:58:57 as along with 4 people kaarsinogen lyongu nklee kmdaily
	Transcriptional regulatory code of a eukaryotic genome [My Copy] Nature, Vol. 431, No. 7004. (02 September 2004), pp. 99-104. by Christopher T. Harbison, D. Benjamin Gordon, Tong I. Lee, et al.Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford, Nancy M. Hannett, Jean-Bosco Tagne, David B. Reynolds, Jane Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry K. Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young posted to clustering by Dulce on 2009-06-17 17:48:41 as along with 29 people and 8 groups viren4388 daveGerrard talponer wowalz siebert alokm tuck lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee cisevol njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
	Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W199-203. by Giulio Pavesi, Paolo Mereghetti, Giancarlo Mauri, Graziano Pesole posted to regulatory gene co-regulated by Dulce on 2009-06-16 20:48:40 as along with 8 people farhat wowalz coldmeadow djkt dquest xiaobeizhao dandaman bryankr
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to factor regulatory transcription by Dulce on 2009-06-16 20:44:41 as along with 38 people and 6 groups mpizbioinfo megraw farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
	A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction [My Copy] Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1718-1727. by Lee A. Newberg, William A. Thompson, Sean Conlan, Thomas M. Smith, Lee A. McCue, Charles E. Lawrence posted to no-tag by Dulce on 2009-06-15 23:32:29 as along with 7 people and 1 group vingron operon Mehlhorn dpollard cjeans sconlan siebert EisenLab
	Gibbs Recursive Sampler: finding transcription factor binding sites [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3580-3585. by William Thompson, Eric C. Rouchka, Charles E. Lawrence posted to gibbs-sampling by Dulce on 2009-06-15 23:31:25 as along with 8 people wowalz Mehlhorn jmartin49 lyongu dquest daniel_quest johncumbers xiaobeizhao
	The Gibbs Centroid Sampler. [My Copy] Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007) by W. A. Thompson, L. A. Newberg, S. Conlan, L. A. McCue, C. E. Lawrence posted to gibbs-sampling by Dulce on 2009-06-15 23:26:21 as along with 4 people wowalz jmartin49 cabbagezs sconlan
	Motif Discovery Through Predictive Modeling of Gene Regulation [My Copy] Research in Computational Molecular Biology (2005), pp. 538-552. by Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris H. Wiggins, Christina Leslie posted to discovery motif by Dulce on 2009-06-15 23:24:17 as along with 1 person coldmeadow
	Markov Chain Monte Carlo and Gibbs Sampling [My Copy] (2004) by B. Walsh posted to monte-carlo gibbs-sampling by Dulce on 2009-06-15 23:20:11 as
	Explaining the Gibbs Sampler [My Copy] The American Statistician, Vol. 46, No. 3. (1992), pp. 167-174. by George Casella, Edward I. George posted to gibbs-sampling by Dulce on 2009-06-15 23:11:59 as along with 17 people gtaralds pool007 fordela casutton sdvillal AbnerCYH jrnold bsilverthorn bayes thijswesterveld fishtank navil seitentaisei adamsi pcarbo vlachmore bhaddow
	Searching databases of conserved sequence regions by aligning protein multiple-alignments. [My Copy] Nucleic Acids Res, Vol. 24, No. 19. (1 October 1996), pp. 3836-3845. by S. Pietrokovski posted to no-tag by Dulce on 2009-06-15 23:08:10 as along with 2 people dgront granujilla
	Computational Identification of Cis-regulatory Elements Associated with Groups of Functionally Related Genes in . . . [My Copy] J. Mol. Biol, Vol. 296 (2000), pp. 1205-1214. by Jason D. Hughes, Preston W. Estep, Saeed Tavazoie, George M. Church posted to no-tag by Dulce on 2009-06-15 23:01:56 as
	Cluster-Buster: finding dense clusters of motifs in DNA sequences [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3666-3668. by Martin C. Frith, Michael C. Li, Zhiping Weng posted to no-tag by Dulce on 2009-06-11 16:39:17 as along with 3 people and 1 group isimpson nklee indigoviolet EisenLab
	Classification of co-expressed genes from DNA regulatory regions [My Copy] Information Fusion, Vol. 10, No. 3. (July 2009), pp. 233-241. by Giulio Pavesi, Giorgio Valentini posted to sequence-classification regulatory motif machine-learning gene-expression co-expressed by Dulce on 2009-06-11 16:29:37 as
	Computational Discovery of Motifs Using Hierarchical Clustering Techniques [My Copy] Data Mining, IEEE International Conference on, Vol. 0 (2008), pp. 1073-1078. by Dianhui Wang, Nung K. Lee posted to motif hierarchical clustering by Dulce on 2009-06-11 16:00:31 as

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clustering	12
regulatory	12
motif	9
binding_sites	4
gibbs-sampling	4
discovery	3
co-regulated	2
gene	2
machine-learning	2
sequences	2
string-matching	2
cluster	1
co-expressed	1
consensus	1
evolutionary-programing	1
expectation_maximization	1
factor	1
fuzzy	1
fuzzycmeans	1
gene-expression	1
genetic_algorithm	1
hierarchical	1
matrix	1
meme	1
monte-carlo	1
neural-networks	1
np-hard	1
oligonucleotoide	1
pattern-discovery	1
pattern-matching	1
probabilistic	1
protein-sequences	1
p-value	1
regulative	1
regulatory_elements	1
regulons	1
sequence-classification	1
sequence-data	1
som	1
suport_vector_machine	1
transcription	1
unaligned	1

Dulce's library 55 articles Export

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