Einat's library 165 articles Export

	Selection of optimal DNA oligos for gene expression arrays. [My Copy] Bioinformatics, Vol. 17, No. 11. (November 2001), pp. 1067-1076. by F. Li, G. D. Stormo posted to primer tm_calculation by Einat on 2009-06-03 15:59:32 as along with 1 person yoanjacquemin
	New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites. [My Copy] Genome research, Vol. 19, No. 7. (31 July 2009), pp. 1175-1183. by Inhan Lee, Subramanian S. Ajay, Jong In I. Yook, et al.Hyun Sil S. Kim, Su Hyung H. Hong, Nam Hee H. Kim, Saravana M. Dhanasekaran, Arul M. Chinnaiyan, Brian D. Athey posted to micro-rna target-prediction by Einat on 2009-04-20 14:05:06 as along with 16 people and 5 groups danaiancu hzoltan ebcgantman jfr ashkelon13 heliopais megraw fenghezi fpattyn tmmurali ppgardne tonamswish stajich daforerog valeriehilgers ealloza Neuroblastoma Journal picks microRNA Mycology cube_and_beyond
	Statistical evaluation of alternative models of human evolution [My Copy] Proceedings of the National Academy of Sciences (31 October 2007), 0708280104. by Nelson J. Fagundes, Nicolas Ray, Mark Beaumont, et al.Samuel Neuenschwander, Francisco M. Salzano, Sandro L. Bonatto, Laurent Excoffier posted to evolution human by Einat on 2007-11-11 06:55:35 as along with 7 people A_Olympia EsepBib joepickrell nurban ryanraaum wsjames xosepedro
	Specialization and evolution of endogenous small RNA pathways [My Copy] Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 884-896. by Elisabeth J. Chapman, James C. Carrington posted to sirna by Einat on 2007-11-11 06:43:09 as along with 8 people natstreet druvus valeriehilgers dchughes alwinpremanand cabbagezs dandaman maralena
	Functional Specificity Lies within the Properties and Evolutionary Changes of Amino Acids [My Copy] Journal of Molecular Biology, Vol. 373, No. 3. (26 October 2007), pp. 801-810. by Saikat Chakrabarti, Stephen H. Bryant, Anna R. Panchenko posted to function-prediction by Einat on 2007-11-07 20:23:52 as along with 5 people and 2 groups qluo jameswasmuth barry biehl mingzhi structural_bioinformatics Bioinformatics
	MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans [My Copy] BMC Bioinformatics, Vol. 8 (17 September 2007), 341. by Ting-Hua Huang, Bin Fan, Max F. Rothschild, Zhi-Liang Hu, Kui Li, Shu-Hong Zhao posted to micro-rna by Einat on 2007-09-23 13:41:34 as along with 3 people natstreet druvus maralena
	Engineering by homologous recombination: exploring sequence and function within a conserved fold. [My Copy] Curr Opin Struct Biol (18 September 2007) by Martina N N. Carbone, Frances H H. Arnold posted to design evolution structure by Einat on 2007-09-23 13:29:59 as along with 3 people Vincent_Rouilly guhjy allPowerde
	MicroRNA-34b and MicroRNA-34c Are Targets of p53 and Cooperate in Control of Cell Proliferation and Adhesion-Independent Growth. [My Copy] Cancer Res (6 September 2007) by David C C. Corney, Andrea Flesken-Nikitin, Andrew K K. Godwin, Wei Wang, Alexander Yu Y. Nikitin posted to cancer micro-rna by Einat on 2007-09-10 16:17:59 as along with 5 people and 2 groups danaiancu guhjy andersbj delenca maralena structural_bioinformatics microRNA
	Occurrence of protein structure elements in conserved sequence regions. [My Copy] BMC structural biology, Vol. 7 (09 January 2007), 3. by Einat Sitbon, Shmuel Pietrokovski posted to evolution secondary-structure sequence-structure superfunnel by Einat on 2007-09-02 16:06:53 as along with 1 person and 1 group pablocarb structural_bioinformatics
	Design of multi-specificity in protein interfaces. [My Copy] PLoS computational biology, Vol. 3, No. 8. (1 August 2007), e164. by Elisabeth L. Humphris, Tanja Kortemme posted to design interface protein_structure by Einat on 2007-09-02 16:02:53 as along with 9 people and 3 groups bmduggan allmensch msuarezdiez jwm bicko dpollard Scis0000002 phoenixzxl marck structural_bioinformatics Bioinformatics EisenLab
	Automated Protein Subfamily Identification and Classification [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e160. by Duncan P. Brown, Nandini Krishnamurthy, Kimmen Sjölander posted to function-prediction sub-family by Einat on 2007-09-02 16:00:00 as along with 5 people and 1 group djkt druvus cjeans mingzhi shung structural_bioinformatics
	Automated discovery of functional generality of human gene expression programs. [My Copy] PLoS computational biology, Vol. 3, No. 8. (10 August 2007) by Georg K. Gerber, Robin D. Dowell, Tommi S. Jaakkola, David K. Gifford posted to expression function-prediction by Einat on 2007-09-02 15:56:58 as along with 3 people and 1 group ptrobajo jfr sebastien_vigneau structural_bioinformatics
	rMotifGen: random motif generator for DNA and protein sequences [My Copy] BMC Bioinformatics, Vol. 8 (07 August 2007), 292. by Eric C. Rouchka, Timothy C. Hardin posted to background-creation motifs sequence-alignment by Einat on 2007-08-12 19:34:07 as along with 1 person and 1 group niallhaslam structural_bioinformatics
	Evolution of Function in the "Two Dinucleotide Binding Domains" Flavoproteins [My Copy] PLoS Comput Biol, Vol. 3, No. 7. (20 July 2007), e121. by Sunil Ojha, Elaine C. Meng, Patricia C. Babbitt posted to evolution fad-binding nucelotide_binding rossman by Einat on 2007-08-05 08:39:04 as along with 5 people and 2 groups anuragsethi pradiptaray barry zwang mdimon structural_bioinformatics Bioinformatics
	Clustering protein environments for function prediction: finding PROSITE motifs in 3D [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 4. (2007), S10. by Sungroh Yoon, Jessica Ebert, Eui Y. Chung, Giovanni De Micheli, Russ Altman posted to active-site protein_structure structural_enviroment by Einat on 2007-07-01 13:56:21 as along with 3 people and 1 group HawkinsJohnC iaolier shadowman structural_bioinformatics
	Prediction of Functional Sites Based on the Fuzzy Oil Drop Model [My Copy] PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e94. by Michał Bryliński, Katarzyna Prymula, Wiktor Jurkowski, et al.Marek Kochańczyk, Ewa Stawowczyk, Leszek Konieczny, Irena Roterman posted to active-site by Einat on 2007-06-26 14:56:06 as along with 3 people and 1 group tomjad iaolier zwang structural_bioinformatics
	Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption with 3D visualization [My Copy] BMC Bioinformatics, Vol. 8 (20 June 2007), 213. by Namshin Kim, Christopher Lee posted to evolution protein_structure by Einat on 2007-06-26 14:49:57 as along with 1 person and 1 group AaronDarling structural_bioinformatics
	Relating destabilizing regions to known functional sites in proteins. [My Copy] BMC bioinformatics, Vol. 8 (30 April 2007), 141. by Benoît H. Dessailly, Marc F. Lensink, Shoshana J. Wodak posted to function-prediction protein-stability by Einat on 2007-05-25 11:28:43 as along with 1 person and 2 groups bdessailly Orengo Group Journal Picks structural_bioinformatics
	How accurate and statistically robust are catalytic site predictions based on closeness centrality? [My Copy] BMC Bioinformatics, Vol. 8 (11 May 2007), 153. by Eric Chea, Dennis R. Livesay posted to centrality function-prediction by Einat on 2007-05-25 11:25:33 as along with 3 people and 1 group pablocarb neils massivemayhem structural_bioinformatics
	Improved prediction of critical residues for protein function based on network and phylogenetic analyses. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by B. Thibert, D. E. Bredesen, G. del Rio posted to evolution function-prediction networks protein_structure by Einat on 2007-05-25 11:24:23 as along with 3 people and 1 group neils pansapiens sriram_s structural_bioinformatics
	Domain swapping in the sporulation response regulator Spo0A. [My Copy] J Mol Biol, Vol. 297, No. 3. (31 March 2000), pp. 757-770. by R. J. Lewis, K. Muchová, J. A. Brannigan, I. Barák, G. Leonard, A. J. Wilkinson posted to spo0a sporulation structure by Einat on 2007-05-07 14:18:23 as along with 1 group structural_bioinformatics
	Phylogeny and functional conservation of sigma(E) in endospore-forming bacteria. [My Copy] Microbiology, Vol. 146 ( Pt 7) (July 2000), pp. 1593-1603. by E. F. Arcuri, M. Wiedmann, K. J. Boor posted to evolution sporulation by Einat on 2007-05-07 14:00:00 as along with 1 group structural_bioinformatics
	PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes. [My Copy] Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3316-3317. by S. P. Gore, D. F. Burke, T. L. Blundell posted to complex protein_structure by Einat on 2007-04-16 17:14:27 as along with 4 people and 1 group bicko skhadar massivemayhem medic0747 structural_bioinformatics
	A comparative genomic view of clostridial sporulation and physiology [My Copy] Nat Rev Micro, Vol. 3, No. 12. (24 October 2005), pp. 969-978. by Carlos J. Paredes, Keith V. Alsaker, Eleftherios T. Papoutsakis posted to evolution sporulation by Einat on 2007-04-11 13:33:45 as along with 2 people and 1 group RasmusJensen Winzer structural_bioinformatics
	Cyanobacterial two-component proteins: structure, diversity, distribution, and evolution. [My Copy] Microbiol Mol Biol Rev, Vol. 70, No. 2. (June 2006), pp. 472-509. by M. K. Ashby, J. Houmard posted to evolution sporulation by Einat on 2007-04-11 13:32:38 as along with 1 group structural_bioinformatics
	The Generation of New Protein Functions by the Combination of Domains [My Copy] Structure, Vol. 15, No. 1. (January 2007), pp. 85-99. by Matthew Bashton, Cyrus Chothia posted to domains protein-function by Einat on 2007-04-11 13:19:49 as along with 7 people and 1 group cmzmasek ucbcjbm tny madhadron choonpeng cjeans bioinfolib structural_bioinformatics
	Structure, function and evolution of multidomain proteins. [My Copy] Current opinion in structural biology, Vol. 14, No. 2. (April 2004), pp. 208-216. by Christine Vogel, Matthew Bashton, Nicola D. Kerrison, Cyrus Chothia, Sarah A. Teichmann posted to domains evolution protein-function protein_structure review by Einat on 2007-04-11 13:18:01 as along with 5 people and 1 group wiedenhoeft dgront Schmidtc cjeans cmzmasek structural_bioinformatics
	The linked conservation of structure and function in a family of high diversity: the monomeric cupredoxins. [My Copy] Structure, Vol. 12, No. 6. (June 2004), pp. 917-925. by J. Gough, C. Chothia posted to conservation protein-function protein_structure by Einat on 2007-04-11 13:00:07 as along with 1 person and 1 group cjeans structural_bioinformatics
	Protein Family Expansions and Biological Complexity [My Copy] PLoS Comput Biol, Vol. 2, No. 5. (26 May 2006), e48. by Christine Vogel, Cyrus Chothia posted to complex protein-families by Einat on 2007-04-11 12:56:28 as along with 5 people and 2 groups igchoi ccots caporaso cjeans cmzmasek structural_bioinformatics biomedical-nlp
	The SUPERFAMILY database in 2007: families and functions. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by D. Wilson, M. Madera, C. Vogel, C. Chothia, J. Gough posted to protein-families protein_structure by Einat on 2007-04-11 12:40:09 as along with 2 people and 1 group dullhunk siebertm structural_bioinformatics
	3D complex: a structural classification of protein complexes. [My Copy] PLoS computational biology, Vol. 2, No. 11. (17 November 2006) by Emmanuel D. Levy, Jose B. Pereira-Leal, Cyrus Chothia, Sarah A. Teichmann posted to complex protein_structure by Einat on 2007-04-11 12:38:06 as along with 3 people and 1 group flbarroso bicko chad_davis structural_bioinformatics
	A ?FRankenstein's monster? approach to comparative modeling: Merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation [My Copy] Proteins: Structure, Function, and Genetics, Vol. 53, No. S6. (2003), pp. 369-379. by Jan Kosinski, Iwona A. Cymerman, Marcin Feder, Michal A. Kurowski, Joanna M. Sasin, Janusz M. Bujnicki posted to fold-recognition structural_prediction by Einat on 2007-04-04 16:04:39 as along with 2 people and 1 group mijam dgront structural_bioinformatics
	Identification of a new subfamily of HNH nucleases and experimental characterization of a representative member, HphI restriction endonuclease. [My Copy] Proteins, Vol. 65, No. 4. (1 December 2006), pp. 867-876. by I. A. Cymerman, A. Obarska, K. J. Skowronek, A. Lubys, J. M. Bujnicki posted to hnh homing-endonuclease by Einat on 2007-04-04 15:38:31 as along with 1 group structural_bioinformatics
	Structural determinants of the rate of protein evolution in yeast. [My Copy] Molecular biology and evolution, Vol. 23, No. 9. (September 2006), pp. 1751-1761. by J. D. Bloom, D. A. Drummond, F. H. Arnold, C. O. Wilke posted to evolution protein-stability protein_structure by Einat on 2007-04-04 15:27:56 as along with 1 person and 1 group gjuggler structural_bioinformatics
	Protein stability promotes evolvability [My Copy] PNAS, Vol. 103, No. 15. (11 April 2006), pp. 5869-5874. by Jesse D. Bloom, Sy T. Labthavikul, Christopher R. Otey, Frances H. Arnold posted to evolution protein-stability by Einat on 2007-04-04 15:24:17 as along with 10 people and 2 groups rklancer Retchless lna penka cmm redelings BioNica Cristiano wilbur cdeane structural_bioinformatics FAB-lab
	Why highly expressed proteins evolve slowly. [My Copy] Proc Natl Acad Sci U S A (21 September 2005) by D Allan A. Drummond, Jesse D D. Bloom, Christoph Adami, Claus O O. Wilke, Frances H H. Arnold posted to evolution folding protein-stability protein_structure by Einat on 2007-04-04 15:21:31 as along with 17 people and 5 groups codonusage allmaya michaelbarton rklancer stevanspringer bjorns imouthesmp aprasad dayjm marcius xwbcn penka balabu malcook balicea RamuAnandakrishnan wilbur structural_bioinformatics Nie FAB-lab BioinfoCIPF SGU-CIPF
	Destruction of long-range interactions by a single mutation in lysozyme. [My Copy] Proc Natl Acad Sci U S A (26 March 2007) by Ruhong Zhou, Maria Eleftheriou, Ajay K Royyuru, Bruce J J. Berne posted to centrality folding_nucleation protein-stability protein_structure by Einat on 2007-04-02 14:44:05 as along with 3 people and 1 group allmensch choonpeng gisle structural_bioinformatics
	Exploring the common dynamics of homologous proteins. Application to the globin family. [My Copy] Biophys J, Vol. 89, No. 1. (July 2005), pp. 3-13. by S. Maguid, S. Fernandez-Alberti, L. Ferrelli, J. Echave posted to globin protein-families protein-flexibility by Einat on 2007-02-20 14:29:01 as along with 5 people and 2 groups aqeel gisle barry jlh64 edvin structural_bioinformatics Bioinformatics
	SNPs, Silent But Not Invisible. [My Copy] Science (21 December 2006) by Anton A A. Komar posted to folding protein_structure snps by Einat on 2007-02-20 14:27:10 as along with 5 people and 4 groups Zephyrus misonneh dchughes massivemayhem cat_worth Roswell Cancer Crosstalk structural_bioinformatics G4ID Genetics-of-Gambling
	Evolution of protein fold in the presence of functional constraints [My Copy] Current Opinion in Structural Biology In Nucleic acids/Sequences and topology - Anna Marie Pyle and Jonathan Widom/Nick V Grishin and Sarah A Teichmann, Vol. 16, No. 3. (June 2006), pp. 399-408. by Antonina Andreeva, Alexey G. Murzin posted to evolution protein-function protein_structure by Einat on 2007-02-20 13:45:01 as along with 4 people and 2 groups ana barry tny cjeans structural_bioinformatics Bioinformatics
	Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteins. [My Copy] Science, Vol. 247, No. 4945. (23 February 1990), pp. 939-945. by M. V. Milburn, L. Tong, A. M. deVos, et al.A. Brünger, Z. Yamaizumi, S. Nishimura, S. H. Kim posted to allostery protein_structure by Einat on 2007-02-20 13:43:17 as along with 4 people and 2 groups barry laurabailey allmensch gloria structural_bioinformatics Bioinformatics
	Analysis of chameleon sequences and their implications in biological processes. [My Copy] Proteins (13 February 2007) by Jun-Tao T. Guo, Jerzy W W. Jaromczyk, Ying Xu posted to chameleon by Einat on 2007-02-18 13:08:28 as along with 1 group structural_bioinformatics
	Conserved residues and the mechanism of protein folding. [My Copy] Nature, Vol. 379, No. 6560. (4 January 1996), pp. 96-98. by E. Shakhnovich, V. Abkevich, O. Ptitsyn posted to conservation folding by Einat on 2007-02-18 13:07:51 as along with 2 people and 1 group cat_worth medic0747 structural_bioinformatics
	SNPs, protein structure, and disease. [My Copy] Hum Mutat, Vol. 17, No. 4. (April 2001), pp. 263-270. by Z. Wang, J. Moult posted to protein_structure snps by Einat on 2007-02-18 13:07:16 as along with 4 people and 2 groups ssgong bicko massivemayhem cat_worth References for 3DSim paper structural_bioinformatics
	Predicting the Effects of Amino Acid Substitutions on Protein Function. [My Copy] Annu Rev Genomics Hum Genet (9 August 2005) by Pauline C C. Ng, Steven Henikoff posted to amino-acid-propensities protein-function by Einat on 2007-02-18 13:06:18 as along with 7 people and 2 groups daforerog caporaso hdopazo ramensky massivemayhem cat_worth lpfernandes structural_bioinformatics biomedical-nlp
	Allosteric determinants in guanine nucleotide-binding proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 14445-14450. by M. E. Hatley, S. W. Lockless, S. K. Gibson, A. G. Gilman, R. Ranganathan posted to allostery by Einat on 2007-02-18 13:04:57 as along with 5 people and 5 groups qluo barry lna marcius caporaso structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
	Flavin-dependent enzymes [My Copy] In Comprehensive biological catalysis (1998), pp. 84-100. by B. A. Palfey, V. Massey edited by M. Sinnot posted to fad-binding by Einat on 2007-02-18 13:04:08 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Hydrogen bonding increases packing density in the protein interior [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 2. (2006), pp. 278-282. by David Schell, Jerry Tsai, Martin J. Scholtz, Nick C. Pace posted to hydrogen-bonds protein-stability by Einat on 2007-02-18 13:03:27 as along with 2 people and 2 groups jmrivort cat_worth Supramolecular structural_bioinformatics
	Low-throughput model design of protein folding inhibitors. [My Copy] Proteins (12 February 2007) by R A A. Broglia, G Tiana, L Sutto, D Provasi, V Perelli posted to protein-stability by Einat on 2007-02-18 12:40:44 as along with 1 group structural_bioinformatics
	Local motions in a benchmark of allosteric proteins. [My Copy] Proteins (12 February 2007) by Michael D D. Daily, Jeffrey J J. Gray posted to allostery protein_structure by Einat on 2007-02-18 12:34:47 as along with 4 people and 1 group anuragsethi allmensch lna choonpeng structural_bioinformatics

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evolution	33
protein_structure	31
secondary-structure	28
folding	20
function-prediction	20
active-site	14
conservation	13
protein-families	13
beta-strand	11
protein-stability	11
sequence-structure	10
alpha-helix	9
alphabeta	8
loops	8
motifs	8
prediction	8
amino-acid-propensities	6
conformation	6
domains	6
networks	5
protein-function	5
review	5
topology	5
contact-map	4
ramachandran	4
server	4
s_h	4
sporulation	4
structural_alignment	4
structure	4
allostery	3
complex	3
entropy	3
flexibility	3
folds	3
globin	3
metabolomics	3
micro-rna	3
propensities	3
sequence-alignment	3
structural-class	3
structure-clasification	3
superfunnel	3
tim-barrel	3
1q5x	2
beta-hairpin	2
centrality	2
core	2
design	2
electrostatics	2
fad-binding	2
folding_nucleation	2
homing-endonuclease	2
linkers	2
local-interactions	2
loop-strand	2
msa	2
neutral-networks	2
protein-flexibility	2
rnasee_inhibitor	2
robustness	2
secondary-structure-assignment	2
snps	2
stabilization-centers	2
sub-family	2
tertiary-structure	2
turn	2
accuracy	1
background-creation	1
beta_flexibility	1
blocks	1
cancer	1
cavities	1
chameleon	1
coevolution	1
context	1
dcm	1
dna-binding	1
enzyme	1
expression	1
fold-recognition	1
hnh	1
human	1
hydrogen-bonds	1
immunoglobulin	1
interface	1
kinase	1
kinetics	1
lon-range-interactions	1
mismatch-repair	1
mutagenesis	1
neural-networks	1
neutral	1
nucelotide_binding	1
phylogenomics	1
p-loop	1
primer	1
protein-structure-comparison	1
protein-thermostability	1
rossman	1
r_package	1
rraa	1
sarig	1
sirna	1
specificity	1
spo0a	1
stability	1
structural_enviroment	1
structural_prediction	1
supersecondary	1
supersecondary_library	1
target-prediction	1
thik	1
thz	1
tm_calculation	1
transitions	1
transmembrane	1
weight	1

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