Elena_Zubova's library 345 articles Export

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	Principles of Condensed Matter Physics [My Copy] (28 September 2000) by P. M. Chaikin, T. C. Lubensky posted to textbooks by Elena_Zubova on 2009-03-03 06:55:31 as along with 2 people kulinskii chiufanlee
	Thermodynamics: A Dynamical Systems Approach [My Copy] (05 July 2005) by Wassim M. Haddad, VijaySekhar Chellaboina, Sergey G. Nersesov posted to theory-of-phase-transitions thermodynamics textbooks by Elena_Zubova on 2009-10-17 05:38:50 as along with 1 person NitinCR
	Salt induced B -- A transition of poly(dG).poly(dC) and the stabilization of A form by its methylation [My Copy] Nucl. Acids Res., Vol. 14, No. 6. (11 March 1986), pp. 2737-2748. by Yoshiftuni Nishimura, Chikako Torigoe, Masamichi Tsuboi posted to dna-ab-exp by Elena_Zubova on 2008-09-19 14:51:21 as
	Cations as hydrogen bond donors: a view of electrostatic interactions in DNA. [My Copy] Annu Rev Biophys Biomol Struct, Vol. 32 (2003), pp. 27-45. by J. A. Subirana, M. Soler-Lopez posted to dna_solution_dielectric solutions by Elena_Zubova on 2008-09-19 10:22:08 as along with 1 person flbarroso
	MODELING WATER, THE HYDROPHOBIC EFFECT, AND ION SOLVATION [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 34, No. 1. (2005), pp. 173-199. by Ken A. Dill, Thomas M. Truskett, Vojko Vlachy, Barbara H. Lee posted to dna_solution_dielectric solutions by Elena_Zubova on 2008-09-19 10:20:40 as along with 2 people and 1 group whitead Lombardo_7 Jiang Research Group
	Macroscopic Dynamics of Complex Metastable Systems: Theory, Algorithms, and Application to B-DNA [My Copy] SIAM Journal on Applied Dynamical Systems, Vol. 7, No. 2. (2008), pp. 532-560. by Illia Horenko, Evelyn Dittmer, Filip Lankas, John Maddocks, Philipp Metzner, Christof Schütte posted to dynamics by Elena_Zubova on 2008-09-02 11:43:59 as along with 1 person Diego_Prada
	Molecular dynamics calculation of thermodynamic properties of nanostructures [My Copy] Physical Mesomechanics, Vol. 11, No. 1-2. (January 2008), pp. 19-24. by I. Golovnev, E. Golovneva, V. Fomin posted to thermodynamic_properties pe-phases molecular_dynamics_calculation by Elena_Zubova on 2009-09-30 17:14:52 as
	Mixed-valence manganites [My Copy] Advances in Physics, Vol. 48, No. 2. (March 1999), pp. 167-293. by J. M. D. Coey, M. Viret, S. Von Molnar posted to perovskites by Elena_Zubova on 2009-08-31 17:59:42 as
	Fundamental Forces of Nature: The Story of Gauge Fields [My Copy] (17 May 2007) by Kerson Huang posted to textbooks by Elena_Zubova on 2009-06-13 15:46:27 as along with 1 person NitinCR
	Integral equation method for calculating entropy of confined chains [My Copy] Journal of Applied Physics, Vol. 52, No. 10. (1981), pp. 5930-5933. by R. G. Priest posted to pe-phases thermodynamics by Elena_Zubova on 2009-06-08 08:06:29 as
	Model calculation of the conformational entropy of the high-pressure intermediate phase of polyethylene [My Copy] Macromolecules, Vol. 15, No. 5. (1 September 1982), pp. 1357-1364. by Richard G. Priest posted to pe-phases thermodynamics by Elena_Zubova on 2009-06-08 08:00:58 as
	Calculation of the high-pressure phase diagram of polyethylene [My Copy] Macromolecules, Vol. 18, No. 7. (1 July 1985), pp. 1504-1508. by Richard G. Priest posted to pe-phases thermodynamics by Elena_Zubova on 2009-06-08 07:40:56 as
	Molecular Renormalization Group Coarse-Graining of Polymer Chains: Application to Double-Stranded DNA [My Copy] Vol. 96, No. 10. (20 May 2009), pp. 4044-4052. by Alexey Savelyev, Garegin A. Papoian posted to coarse-grain by Elena_Zubova on 2009-05-20 16:55:44 as along with 2 people tomweingarten onufriev
	A Computational Framework for Mechanical Response of Macromolecules: Application to the Salt Concentration Dependence of DNA Bendability [My Copy] Vol. 96, No. 9. (6 May 2009), pp. 3543-3554. by Liang Ma, Arun Yethiraj, Xi Chen, Qiang Cui posted to dna-electrostatics dna_bending by Elena_Zubova on 2009-05-06 10:30:06 as
	Making Sense of the Legendre Transform [My Copy] (6 Jun 2008) by R. K. P. Zia, Edward F. Redish, Susan R. Mckay posted to thermodynamics by Elena_Zubova on 2009-05-01 11:46:57 as along with 4 people Pomm marcio mouton cager
	PHASE TRANSITIONS IN POLYMERS: THE ROLE OF METASTABLE STATES [My Copy] (2008) by Stephen Cheng posted to pe-phases thermodynamics by Elena_Zubova on 2009-04-28 16:40:59 as
	Equation of state of a Lennard-Jones polymer [My Copy] Journal of Physics A: Mathematical and General, Vol. 10, No. 1. (1977), pp. 59-64. by J. Naghizadeh, N. K. Ailawadi posted to eos by Elena_Zubova on 2009-04-24 09:03:44 as
	The length dependence of translational diffusion, free solution electrophoretic mobility, and electrophoretic tether force of rigid rod-like model duplex DNA. [My Copy] Biophysical journal, Vol. 81, No. 5. (November 2001), pp. 2558-2568. by S. Allison, C. Chen, D. Stigter posted to dna-ions-solution by Elena_Zubova on 2009-04-10 16:43:11 as
	Calculating total electrostatic energies with the nonlinear Poisson-Boltzmann equation [My Copy] The Journal of Physical Chemistry, Vol. 94, No. 19. (1990), pp. 7684-7692. by Kim A. Sharp, Barry Honig posted to dna-analytical-models dna-electrostatics dna-entropy by Elena_Zubova on 2009-04-10 10:02:57 as along with 2 people dmitry_s_yershov dfgreen
	INTERACTIONS IN AQUEOUS SOLUTIONS. III. ON STATISTICAL THERMODYNAMICS OF COLLOIDAL ELECTROLYTES [My Copy] The Journal of Physical Chemistry, Vol. 64, No. 7. (1 July 1960), pp. 838-842. by D. Stigter posted to dna-analytical-models dna-electrostatics dna-entropy by Elena_Zubova on 2009-04-10 09:59:38 as
	Universal features of the equation of state of metals [My Copy] Phys. Rev. B, Vol. 29 (March 1984), pp. 2963-2969. by J. H. Rose, J. R. Smith, F. Guinea, J. Ferrante posted to thermodynamics by Elena_Zubova on 2009-02-10 12:02:47 as along with 2 people and_ped10 ranger
	Electronic Structure and the Properties of Solids: The Physics of the Chemical Bond [My Copy] (01 July 1989) by Walter A. Harrison posted to textbooks by Elena_Zubova on 2009-02-10 11:33:51 as
	Мнимости в геометрии. [My Copy] by Флоренский posted to coarse-grain by Elena_Zubova on 2009-01-29 19:28:12 as
	Multi-scale modelling of heterogeneous materials with fixed and evolving microstructures [My Copy] Modelling and Simulation in Materials Science and Engineering, Vol. 13, No. 1. (2005), pp. 95-121. by Jiun-Shyan Chen, Shafigh Mehraeen posted to coarse-grain by Elena_Zubova on 2009-01-15 16:40:30 as
	Coarse-grained force field for the nucleosome from self-consistent multiscaling [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2008), NA. by Karine Voltz, Joanna Trylska, Valentina Tozzini, Vandana Kurkal-Siebert, Jörg Langowski, Jeremy Smith posted to coarse-grain by Elena_Zubova on 2009-01-05 19:50:22 as along with 3 people barmak7282 RamuAnandakrishnan onufriev
	Multiscale modeling of biomolecular systems: in serial and in parallel. [My Copy] Current opinion in structural biology, Vol. 17, No. 2. (April 2007), pp. 192-198. by Gary S. Ayton, Will G. Noid, Gregory A. Voth posted to coarse-grain by Elena_Zubova on 2009-01-05 19:49:01 as along with 5 people bertelsen jonathancooper RamuAnandakrishnan aqeel choonpeng
	Effective potentials for ion--DNA interactions [My Copy] The Journal of Chemical Physics, Vol. 111, No. 24. (1999), pp. 11207-11215. by A. P. Lyubartsev, A. Laaksonen posted to dna-ions coarse-grain by Elena_Zubova on 2009-01-05 18:41:59 as along with 2 people onufriev softsimu
	An A-DNA triplet code: thermodynamic rules for predicting A- and B-DNA [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 92, No. 14. (3 July 1995), pp. 6464-6468. by B. Basham, G. P. Schroth, P. S. Ho posted to dna-ab-exp by Elena_Zubova on 2008-12-17 15:34:49 as
	Recent advances in the study of nucleic acid flexibility by molecular dynamics [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Modesto Orozco, Agnes Noy, Alberto Pérez posted to dna-md by Elena_Zubova on 2008-12-17 07:57:37 as along with 4 people and 1 group allmensch sobolevnrm onufriev mazo baker-group
	DNA conformation is determined by economics in the hydration of phosphate groups [My Copy] Nature, Vol. 324, No. 6095. (27 November 1986), pp. 385-388. by Wolfram Saenger, William N. Hunter, Olga Kennard posted to dna-water by Elena_Zubova on 2008-12-16 16:41:51 as
	Solvation Free Energies of the Nucleic Acid Bases [My Copy] J. Phys. Chem., Vol. 100, No. 20. (16 May 1996), pp. 8587-8594. by J. L. Miller, P. A. Kollman posted to dna-water by Elena_Zubova on 2008-12-03 10:33:17 as along with 1 person and 1 group sobolevnrm baker-group
	High flexibility of DNA on short length scales probed by atomic force microscopy [My Copy] Nat Nano, Vol. 1, No. 2. (November 2006), pp. 137-141. by Paul A. Wiggins, Thijn van der Heijden, Fernando Moreno-Herrero, et al.Andrew Spakowitz, Rob Phillips, Jonathan Widom, Cees Dekker, Philip C. Nelson posted to dna_bending by Elena_Zubova on 2008-12-03 10:25:12 as
	A universal equation of state for solids [My Copy] Journal of Physics C: Solid State Physics, Vol. 19, No. 20. (1986), pp. L467-L473. by P. Vinet, J. Ferrante, J. R. Smith, J. H. Rose posted to pe-phases thermodynamics by Elena_Zubova on 2008-12-03 09:17:15 as
	Calculation of the elastic constants and the lattice energy of the polyethylene crystal [My Copy] Journal of Polymer Science Part C: Polymer Symposia, Vol. 15, No. 1. (1967), pp. 55-74. by Akira Odajima, Takashi Maeda posted to eos by Elena_Zubova on 2008-12-03 08:21:10 as
	The Persistence Length of DNA Is Reached from the Persistence Length of its Null Isomer through an Internal Electrostatic Stretching Force. [My Copy] Biophys J (25 August 2006) by Gerald Manning posted to dna_bending by Elena_Zubova on 2008-11-25 10:07:59 as along with 2 people wilsoros ssfeldman
	Remeasuring the Double Helix [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 446-449. by Rebecca S. Mathew-Fenn, Rhiju Das, Pehr A. Harbury posted to dna_bending by Elena_Zubova on 2008-11-25 09:57:30 as along with 6 people and 2 groups sobolevnrm jbhiatt melting kshundyak marck samjlord baker-group moernerlab
	DNA Overstretching Transition: Ionic Strength Effects [My Copy] Biophys. J., Vol. 89, No. 2. (1 August 2005), pp. 967-978. by Olli Punkkinen, Per L. Hansen, Ling Miao, Ilpo Vattulainen posted to dna-analytical-models dna-electrostatics dna-ions dna_bending by Elena_Zubova on 2008-11-25 09:37:50 as
	The contribution of phosphate-phosphate repulsions to the free energy of DNA bending [My Copy] Nucleic Acids Research, Vol. 33, No. 4. (2005), pp. 1257-1268. by Range Kevin, Mayaan Evelyn, L. J. Maher, York posted to dna-electrostatics dna-ions dna_bending by Elena_Zubova on 2008-11-25 09:26:10 as along with 2 people and 1 group sobolevnrm afenley baker-group
	Ionic effects on the elasticity of single DNA molecules [My Copy] PNAS, Vol. 94, No. 12. (10 June 1997), pp. 6185-6190. by Christoph G. Baumann, Steven B. Smith, Victor A. Bloomfield, Carlos Bustamante posted to dna-electrostatics dna-exp dna-ions dna_bending by Elena_Zubova on 2008-11-25 09:17:41 as along with 1 person Tarrow
	Polyelectrolyte electrostatics: Salt dependence, entropic, and enthalpic contributions to free energy in the nonlinear Poisson-Boltzmann model [My Copy] Biopolymers, Vol. 36, No. 2. (1995), pp. 227-243. by Kim A. Sharp posted to dna-analytical-models dna-electrostatics by Elena_Zubova on 2008-11-14 08:54:13 as along with 1 person onufriev
	Effect of the Precise Branching of Polyethylene at Each 21st CH2 Group on Its Phase Transitions, Crystal Structure, and Morphology [My Copy] Macromolecules, Vol. 39, No. 1. (10 January 2006), pp. 204-217. by W. Qiu, J. Sworen, M. Pyda, et al.E. Nowak-Pyda, A. Habenschuss, K. B. Wagener, B. Wunderlich posted to pe-phases by Elena_Zubova on 2008-11-13 05:55:04 as
	Electrostatic mechanisms of DNA deformation. [My Copy] Annual review of biophysics and biomolecular structure, Vol. 29 (2000), pp. 497-521. by L. D. Williams, L. J. Maher posted to dna-electrostatics dna_bending by Elena_Zubova on 2008-11-12 13:48:06 as along with 1 person onufriev
	Intrachain dynamics and interchain structures of polymers: A comparison of polyacetylene, polyethylene, polyaniline, and poly(paraphenylene vinylene) [My Copy] Physical Review B, Vol. 44, No. 21. (1 December 1991), 11609. by J. Ma, J. E. Fischer, E. M. Scherr, et al.A. G. Macdiarmid, M. E. Józefowicz, A. J. Epstein, C. Mathis, B. Francois, N. Coustel, P. Bernier posted to pe-phases by Elena_Zubova on 2008-11-12 13:28:33 as
	Phase behaviour of n-alkanes and polyethylene. A thermodynamic study [My Copy] Trans. Faraday Soc., Vol. 65 (1969), pp. 1749-1763. by C. M. L. Atkinson, M. J. Richardson posted to pe-phases by Elena_Zubova on 2008-10-31 15:57:27 as
	A simple physical description of DNA dynamics: quasi-harmonic analysis as a route to the configurational entropy [My Copy] Journal of Physics: Condensed Matter, Vol. 19, No. 7. (2007), 076103. by S. A. Harris, C. A. Laughton posted to dna-entropy dna_bending dynamics by Elena_Zubova on 2008-10-22 15:49:54 as
	Thermal Expansion of the Polyethylene Unit Cell [My Copy] The Journal of Chemical Physics, Vol. 51, No. 1. (1969), pp. 425-430. by Mitchel Shen, Wilford N. Hansen, Paul C. Romo posted to pe-phases by Elena_Zubova on 2008-10-22 08:26:03 as
	The crystal structure of long-chain normal paraffin hydrocarbons. The "shape" of the <CH2 group [My Copy] Trans. Faraday Soc., Vol. 35 (1939), pp. 482-491. by C. W. Bunn posted to pe-phases by Elena_Zubova on 2008-10-22 08:20:50 as
	Lamellar and interlamellar structure in melt-crystallized polyethylene. I. Degree of crystallinity, atomic positions, particle size, and lattice disorder of the first and second kinds [My Copy] Journal of Polymer Science Part A-2: Polymer Physics, Vol. 8, No. 2. (1970), pp. 243-276. by S. Kavesh, J. M. Schultz posted to pe-phases by Elena_Zubova on 2008-10-22 08:16:27 as
	Exploring the Essential Dynamics of B-DNA [My Copy] J. Chem. Theory Comput., Vol. 1, No. 5. (13 September 2005), pp. 790-800. by A. Perez, J. R. Blas, M. Rueda, J. M. Lopez-Bes, X. Delacruz, M. Orozco posted to dna-analytical-models dna-entropy md coarse-grain by Elena_Zubova on 2008-10-20 08:56:53 as along with 1 person rabio
	Origin of the intrinsic rigidity of DNA. [My Copy] Nucleic Acids Res, Vol. 32, No. 13. (2004), pp. 4055-4059. by J. B. Mills, P. J. Hagerman posted to dna-exp by Elena_Zubova on 2008-10-17 08:31:32 as

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pe-phases	71
thermodynamics	38
coarse-grain	29
textbooks	28
dna-electrostatics	21
dna_bending	20
dna-analytical-models	19
theory-of-phase-transitions	18
dna-ab-exp	16
dna-exp	16
electrostatics	14
md	13
dna-md	12
dna-entropy	10
dna-ab-md	9
dna-forms	9
dna-geometry	9
dna-opening	9
dna-water	9
eos	8
polymer-deformation	8
dna-stacking	7
phase-transitions	7
diss	6
dna-ab-analytics	6
dna_solution_dielectric	6
dynamics	5
solutions	5
dna-ions	4
pe-defects	4
clusters	3
dna-electrophoresis	3
dna-goal	3
dna-plateau	3
dna-time-scales	3
perovskites	3
pe-num	2
solitons	2
water	2
dna-binding	1
dna-ions-solution	1
dna-solitons	1
gb	1
liquid	1
molecular_dynamics_calculation	1
phases	1
pressure	1
q	1
thermodynamic_properties	1

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