Elena_Zubova's coarse-grain [29 articles] Export

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	Molecular Renormalization Group Coarse-Graining of Polymer Chains: Application to Double-Stranded DNA [My Copy] Vol. 96, No. 10. (20 May 2009), pp. 4044-4052. by Alexey Savelyev, Garegin A. Papoian posted to coarse-grain by Elena_Zubova on 2009-05-20 16:55:44 as along with 2 people tomweingarten onufriev
	Mesoscopic modeling for nucleic acid chain dynamics [My Copy] Physical Review E, Vol. 71, No. 5. (5 May 2005), 051902. by M. Sales-Pardo, R. Guimerà, A. A. Moreira, J. Widom, L. A. N. Amaral posted to coarse-grain by Elena_Zubova on 2009-02-06 14:30:54 as
	Мнимости в геометрии. [My Copy] by Флоренский posted to coarse-grain by Elena_Zubova on 2009-01-29 19:28:12 as
	Multi-scale modelling of heterogeneous materials with fixed and evolving microstructures [My Copy] Modelling and Simulation in Materials Science and Engineering, Vol. 13, No. 1. (2005), pp. 95-121. by Jiun-Shyan Chen, Shafigh Mehraeen posted to coarse-grain by Elena_Zubova on 2009-01-15 16:40:30 as
	Coarse-grained peptide modeling using a systematic multiscale approach. [My Copy] Biophysical journal, Vol. 92, No. 12. (15 June 2007), pp. 4289-4303. by J. Zhou, I. F. Thorpe, S. Izvekov, G. A. Voth posted to coarse-grain by Elena_Zubova on 2009-01-15 15:45:17 as
	Coarse-grained force field for the nucleosome from self-consistent multiscaling [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2008), NA. by Karine Voltz, Joanna Trylska, Valentina Tozzini, Vandana Kurkal-Siebert, Jörg Langowski, Jeremy Smith posted to coarse-grain by Elena_Zubova on 2009-01-05 19:50:22 as along with 3 people barmak7282 RamuAnandakrishnan onufriev
	Multiscale modeling of biomolecular systems: in serial and in parallel. [My Copy] Current opinion in structural biology, Vol. 17, No. 2. (April 2007), pp. 192-198. by Gary S. Ayton, Will G. Noid, Gregory A. Voth posted to coarse-grain by Elena_Zubova on 2009-01-05 19:49:01 as along with 5 people bertelsen jonathancooper RamuAnandakrishnan aqeel choonpeng
	Effective potentials for ion--DNA interactions [My Copy] The Journal of Chemical Physics, Vol. 111, No. 24. (1999), pp. 11207-11215. by A. P. Lyubartsev, A. Laaksonen posted to dna-ions coarse-grain by Elena_Zubova on 2009-01-05 18:41:59 as along with 2 people onufriev softsimu
	On the Reduction of Molecular Degrees of Freedom in Computer Simulations [My Copy] Novel Methods in Soft Matter Simulations (2004), pp. 2256-2256. by Alexander Lyubartsev, Aatto Laaksonen posted to coarse-grain by Elena_Zubova on 2009-01-05 18:39:37 as along with 1 person onufriev
	From rigid base pairs to semiflexible polymers: Coarse-graining DNA [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 76, No. 2. (2007) by Nils B. Becker, Ralf Everaers posted to coarse-grain by Elena_Zubova on 2008-11-24 09:00:47 as along with 1 person onufriev
	A standard reference frame for the description of nucleic acid base-pair geometry, [My Copy] Journal of Molecular Biology, Vol. 313, No. 1. (12 October 2001), pp. 229-237. by W. Olson posted to coarse-grain dna-geometry by Elena_Zubova on 2008-10-28 06:05:45 as along with 2 people and 1 group oteri A_Coletta_Thesis Structural Biology Group TorVergata
	3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. [My Copy] Nucleic Acids Res, Vol. 31, No. 17. (1 September 2003), pp. 5108-5121. by X. J. Lu, W. K. Olson posted to coarse-grain dna-geometry by Elena_Zubova on 2008-10-28 05:52:16 as along with 2 people afenley dna
	Exploring the Essential Dynamics of B-DNA [My Copy] J. Chem. Theory Comput., Vol. 1, No. 5. (13 September 2005), pp. 790-800. by A. Perez, J. R. Blas, M. Rueda, J. M. Lopez-Bes, X. Delacruz, M. Orozco posted to dna-analytical-models dna-entropy md coarse-grain by Elena_Zubova on 2008-10-20 08:56:53 as along with 1 person rabio
	Coarse Grained Model for Semiquantitative Lipid Simulations [My Copy] The Journal of Physical Chemistry B, Vol. 108, No. 2. (1 January 2004), pp. 750-760. by Siewert J. Marrink, Alex H. de Vries, Alan E. Mark posted to coarse-grain by Elena_Zubova on 2008-10-20 08:45:07 as along with 5 people and 1 group dsmueller Marine choonpeng softsimu sunnytov Molecular dynamics in MSU
	Bending and Base-Stacking Interactions in Double-Stranded DNA [My Copy] Physical Review Letters, Vol. 82, No. 22. (31 May 1999), 4560. by Zhou Haijun, Zhang Yang, Ou-Yang Zhong-Can posted to dna-stacking coarse-grain by Elena_Zubova on 2008-10-20 08:26:12 as
	Sequence-Dependent Motions of DNA: A Normal Mode Analysis at the Base-Pair Level [My Copy] Biophys. J., Vol. 83, No. 1. (1 July 2002), pp. 22-41. by Atsushi Matsumoto, Wilma K. Olson posted to coarse-grain dna-entropy by Elena_Zubova on 2008-10-17 11:24:25 as
	Motifs in nucleic acids: Molecular mechanics restraints for base pairing and base stacking [My Copy] Journal of Computational Chemistry, Vol. 24, No. 1. (2003), pp. 1-9. by Stephen C. Harvey, Chunlin Wang, Stephane Teletchea, Richard Lavery posted to coarse-grain by Elena_Zubova on 2008-10-17 11:18:53 as
	Static and statistical bending of DNA evaluated by Monte Carlo simulations [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 88, No. 16. (1991), pp. 7046-7050. by V. B. Zhurkin, N. B. Ulyanov, A. A. Gorin, R. L. Jernigan posted to coarse-grain by Elena_Zubova on 2008-10-17 11:13:30 as
	DNA stretching and compression: large-scale simulations of double helical structures [My Copy] Journal of Molecular Biology, Vol. 289, No. 5. (25 June 1999), pp. 1301-1326. by K. Kosikov, A. A. Gorin, V. B. Zhurkin, W. K. Olson posted to md coarse-grain by Elena_Zubova on 2008-10-17 10:57:29 as
	The middle way [My Copy] Proceedings of the National Academy of Sciences, Vol. 97, No. 1. (4 January 2000), pp. 32-37. by R. B. Laughlin, David Pines, Joerg Schmalian, Branko P. Stojkovic, Peter Wolynes posted to md textbooks coarse-grain by Elena_Zubova on 2008-10-17 10:26:45 as along with 4 people and 1 group sobolevnrm paulschlesinger madhadron samjlord baker-group
	From Atomic to Mesoscopic Descriptions of the Internal Dynamics of DNA [My Copy] Biophys. J., Vol. 77, No. 5. (1 November 1999), pp. 2366-2376. by N. Bruant, D. Flatters, R. Lavery, D. Genest posted to coarse-grain dna-entropy md by Elena_Zubova on 2008-10-17 09:52:49 as
	A breathing wormlike chain model on DNA denaturation and bubble: Effects of stacking interactions [My Copy] The Journal of Chemical Physics, Vol. 128, No. 5. (2008) by Jae Y. Kim, Jae H. Jeon, Wokyung Sung posted to coarse-grain by Elena_Zubova on 2008-10-16 06:06:18 as
	Mechanical unfolding of RNA hairpins [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 19. (10 May 2005), pp. 6789-6794. by Changbong Hyeon, D. Thirumalai posted to coarse-grain by Elena_Zubova on 2008-10-15 14:34:31 as along with 1 person cactus
	Inter-DNA Electrostatics from Explicit Solvent Molecular Dynamics Simulations [My Copy] J. Am. Chem. Soc., Vol. 129, No. 19. (16 May 2007), pp. 6060-6061. by A. Savelyev, G. A. Papoian posted to dna-electrostatics coarse-grain by Elena_Zubova on 2008-10-15 14:29:41 as
	Electrostatic, Steric, and Hydration Interactions Favor Na+ Condensation around DNA Compared with K+ [My Copy] J. Am. Chem. Soc., Vol. 128, No. 45. (15 November 2006), pp. 14506-14518. by A. Savelyev, G. A. Papoian posted to dna-electrostatics coarse-grain by Elena_Zubova on 2008-10-15 14:25:42 as
	Efficient sampling of ion motions in molecular dynamics simulations on DNA: Variant Hamiltonian replica exchange method [My Copy] Chemical Physics Letters, Vol. 454, No. 4-6. (20 March 2008), pp. 391-395. by Donghong Min, Hongzhi Li, Guohui Li, Bernd A. Berg, Marcia O. Fenley, Wei Yang posted to dna-electrostatics coarse-grain by Elena_Zubova on 2008-10-15 14:18:19 as along with 1 person and 1 group sobolevnrm baker-group
	Model simulations of DNA denaturation dynamics [My Copy] The Journal of Chemical Physics, Vol. 114, No. 1. (2001), pp. 579-590. by Karen Drukker, Guosheng Wu, George C. Schatz posted to coarse-grain by Elena_Zubova on 2008-10-15 13:53:24 as
	A coarse grained model for DNA and polymer packaging: statics and dynamics [My Copy] Computational and Mathematical Methods in Medicine, Vol. 6, No. 2. (2005), pp. 115-117. by I. Ali, D. Marenduzzo, C. Micheletti, J. M. Yeomans posted to coarse-grain by Elena_Zubova on 2008-10-15 13:28:50 as
	Wavelet-based multi-scale coarse graining approach for DNA molecules [My Copy] Finite Elements in Analysis and Design, Vol. 43, No. 5. (March 2007), pp. 346-360. by J. Chen, H. Teng, A. Nakano posted to coarse-grain by Elena_Zubova on 2008-10-15 13:26:59 as

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pe-phases	72
thermodynamics	38
coarse-grain	29
textbooks	28
dna-electrostatics	21
dna_bending	20
theory-of-phase-transitions	20
dna-analytical-models	19
dna-ab-exp	16
dna-exp	16
electrostatics	14
md	13
dna-md	12
dna-entropy	10
dna-ab-md	9
dna-forms	9
dna-geometry	9
dna-opening	9
dna-water	9
eos	8
polymer-deformation	8
dna-stacking	7
phase-transitions	7
diss	6
dna-ab-analytics	6
dna_solution_dielectric	6
dynamics	5
solutions	5
dna-ions	4
pe-defects	4
clusters	3
dna-electrophoresis	3
dna-goal	3
dna-plateau	3
dna-time-scales	3
perovskites	3
pe-num	2
solitons	2
water	2
dna-binding	1
dna-ions-solution	1
dna-solitons	1
gb	1
liquid	1
molecular_dynamics_calculation	1
phases	1
pressure	1
q	1
thermodynamic_properties	1

Elena_Zubova's coarse-grain [29 articles] Export

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