Elena_Zubova's md [13 articles] Export

Recent papers added to Elena_Zubova's library classified by the tag md. You can also see everyone's md.

	Molecular dynamics of a kappaB DNA element: base flipping via cross-strand intercalative stacking in a microsecond-scale simulation [My Copy] Nucl. Acids Res. (24 July 2008), gkn473. by Cameron Mura, Andrew J. Mccammon posted to dna-md dna-opening md by Elena_Zubova on 2009-04-10 16:47:03 as along with 1 person and 1 group oteri MuraLab
	Exploring the Essential Dynamics of B-DNA [My Copy] J. Chem. Theory Comput., Vol. 1, No. 5. (13 September 2005), pp. 790-800. by A. Perez, J. R. Blas, M. Rueda, J. M. Lopez-Bes, X. Delacruz, M. Orozco posted to dna-analytical-models dna-entropy md coarse-grain by Elena_Zubova on 2008-10-20 08:56:53 as along with 1 person rabio
	DNA stretching and compression: large-scale simulations of double helical structures [My Copy] Journal of Molecular Biology, Vol. 289, No. 5. (25 June 1999), pp. 1301-1326. by K. Kosikov, A. A. Gorin, V. B. Zhurkin, W. K. Olson posted to md coarse-grain by Elena_Zubova on 2008-10-17 10:57:29 as
	The middle way [My Copy] Proceedings of the National Academy of Sciences, Vol. 97, No. 1. (4 January 2000), pp. 32-37. by R. B. Laughlin, David Pines, Joerg Schmalian, Branko P. Stojkovic, Peter Wolynes posted to md textbooks coarse-grain by Elena_Zubova on 2008-10-17 10:26:45 as along with 4 people and 1 group sobolevnrm paulschlesinger madhadron samjlord baker-group
	From Atomic to Mesoscopic Descriptions of the Internal Dynamics of DNA [My Copy] Biophys. J., Vol. 77, No. 5. (1 November 1999), pp. 2366-2376. by N. Bruant, D. Flatters, R. Lavery, D. Genest posted to coarse-grain dna-entropy md by Elena_Zubova on 2008-10-17 09:52:49 as
	Linear response theory: An alternative to PB and GB methods for the analysis of molecular dynamics trajectories? [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 57, No. 3. (2004), pp. 458-467. by Antonio Morreale, Xavier, Tim Meyer, Josep L. Gelpí, Javier F. Luque, Modesto Orozco posted to md by Elena_Zubova on 2008-10-15 05:52:04 as
	Mesoscopic modeling for nucleic acid chain dynamics [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 71, No. 5. (2005) by Sales M. Pardo, R. Guimerà, A. A. Moreira, J. Widom, L. A. N. Amaral posted to md by Elena_Zubova on 2008-10-15 05:50:29 as
	Theoretical methods for the simulation of nucleic acids [My Copy] Chem. Soc. Rev., Vol. 32, No. 6. (2003), pp. 350-364. by Modesto Orozco, Alberto Perez, Agnes Noy, Javier F. Luque posted to md textbooks by Elena_Zubova on 2008-10-14 18:52:30 as
	Simulation and modeling of nucleic acid structure, dynamics and interactions. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 360-367. by T. E. Cheatham posted to md by Elena_Zubova on 2008-10-12 09:49:04 as along with 1 person lillekatt
	Modelling DNA at the mesoscale: a challenge for nonlinear science? [My Copy] Nonlinearity, Vol. 21, No. 6. (June 2008), pp. T91-T100. by Peyrard, Michel, Cuesta-Lopez, Santiago, James, Guillaume posted to dna-opening md textbooks by Elena_Zubova on 2008-10-12 09:22:48 as
	Can We Model DNA at the Mesoscale? [My Copy] Journal of Biological Physics, Vol. 31, No. 3-4. (December 2005), pp. 273-301. by S. Cuesta-Lopez, J. Errami, F. Falo, M. Peyrard posted to md by Elena_Zubova on 2008-10-12 09:20:18 as
	Implicit Solvent Simulations of DNA and DNA-Protein Complexes: Agreement with Explicit Solvent vs Experiment [My Copy] J. Phys. Chem. B, Vol. 110, No. 34. (31 August 2006), pp. 17240-17251. by J. Chocholousova, M. Feig posted to dna-ab-md gb md by Elena_Zubova on 2008-10-12 08:58:21 as along with 1 person dfgreen
	Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations [My Copy] Nucl. Acids Res., Vol. 31, No. 5. (1 March 2003), pp. 1434-1443. by Emmanuel Giudice, Peter Varnai, Richard Lavery posted to dna-opening md by Elena_Zubova on 2008-10-12 08:17:36 as

Note: You may cite this page as: http://www.citeulike.org/user/Elena_Zubova/tag/md

CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.

pe-phases	72
thermodynamics	38
coarse-grain	29
textbooks	28
dna-electrostatics	21
dna_bending	20
theory-of-phase-transitions	20
dna-analytical-models	19
dna-ab-exp	16
dna-exp	16
electrostatics	14
md	13
dna-md	12
dna-entropy	10
dna-ab-md	9
dna-forms	9
dna-geometry	9
dna-opening	9
dna-water	9
eos	8
polymer-deformation	8
dna-stacking	7
phase-transitions	7
diss	6
dna-ab-analytics	6
dna_solution_dielectric	6
dynamics	5
solutions	5
dna-ions	4
pe-defects	4
clusters	3
dna-electrophoresis	3
dna-goal	3
dna-plateau	3
dna-time-scales	3
perovskites	3
pe-num	2
solitons	2
water	2
dna-binding	1
dna-ions-solution	1
dna-solitons	1
gb	1
liquid	1
molecular_dynamics_calculation	1
phases	1
pressure	1
q	1
thermodynamic_properties	1

Elena_Zubova's md [13 articles] Export

Elena_Zubova's tags