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	AluGene: a database of Alu elements incorporated within protein-coding genes [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D489-492. by Tal Dagan, Rotem Sorek, Eilon Sharon, Gil Ast, Dan Graur posted to no-tag by Ema on 2008-12-03 23:05:36 as
	Structural Relationships between Highly Conserved Elements and Genes in Vertebrate Genomes [My Copy] PLoS ONE, Vol. 3, No. 11. (14 November 2008), e3727. by Hong Sun, Geir Skogerbø, Zhen Wang, Wei Liu, Yixue Li posted to no-tag by Ema on 2008-11-16 00:57:09 as along with 4 people and 1 group sujaikumar hpaces bpcusack sameetmehta Bioinformatics
	The Origins of Eukaryotic Gene Structure [My Copy] Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 450-468. by Michael Lynch posted to no-tag by Ema on 2008-11-10 23:32:13 as along with 26 people and 10 groups operon daveGerrard inesdesantiago karbak stevanspringer dayjm Ayest indigoviolet tny xwbcn dchughes petecl penka mtagaya madhadron cmm brixtonmc zhangli msierk brettc web20student BioNica krishnaJCSG timflutre jwestbrook ArtemPankin BergmanLab EisenLab Computational_Systems_Biology Nie FAB-lab G4ID Bioinformatics_MDACC evo-devo King_Lab Genetics-of-Gambling
	Tree of Life Based on Genome Context Networks [My Copy] PLoS ONE, Vol. 3, No. 10. (October 2008), e3357. by Guohui Ding, Zhonghao Yu, Jing Zhao, et al.Zhen Wang, Yun Li, Xiaobin Xing, Chuan Wang, Lei Liu, Yixue Li posted to no-tag by Ema on 2008-11-09 13:09:54 as along with 2 people pablocarb fhsantanna
	Electrostatic potentials of E.coli genome DNA. [My Copy] Journal of biomolecular structure & dynamics, Vol. 23, No. 3. (December 2005), pp. 341-345. by S. G. Kamzolova, A. A. Sorokin, T. D. Dzhelyadin, P. M. Beskaravainy, A. A. Osypov posted to no-tag by Ema on 2008-10-18 10:21:30 as
	Electrostatic properties of promoter recognized by E. coli RNA polymerase Esigma70. [My Copy] Journal of bioinformatics and computational biology, Vol. 4, No. 2. (April 2006), pp. 455-467. by A. A. Sorokin, A. A. Osypov, T. R. Dzhelyadin, P. M. Beskaravainy, S. G. Kamzolova posted to no-tag by Ema on 2008-10-18 10:20:54 as
	An RNA gene expressed during cortical development evolved rapidly in humans [My Copy] Nature, Vol. 443, No. 7108. (16 August 2006), pp. 167-172. by Katherine S. Pollard, Sofie R. Salama, Nelle Lambert, et al.Marie-Alexandra Lambot, Sandra Coppens, Jakob S. Pedersen, Sol Katzman, Bryan King, Courtney Onodera, Adam Siepel, Andrew D. Kern, Colette Dehay, Haller Igel, Manuel Ares, Pierre Vanderhaeghen, David Haussler posted to no-tag by Ema on 2008-10-10 16:30:33 as along with 16 people and 4 groups rvosa galka8_diploma brewbooks sriesenfeld brian bpb marcius nickluscombe larios joshuashen ealloza ce2benna lusk bpcusack nolodie rrhudson FAB-lab EBI-regulation BioinfoCIPF SGU-CIPF
	Ultraconserved Elements in the Human Genome [My Copy] Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325. by Gill Bejerano, Michael Pheasant, Igor Makunin, et al.Stuart Stephen, W. James Kent, John S. Mattick, David Haussler posted to no-tag by Ema on 2008-10-10 16:30:15 as along with 18 people and 5 groups clearbluespring daforerog ilyashl treangen karbak barry ujh alexisgallagher bpb aprasad balicea dchughes pradiptaray djkt sujaikumar blobbybirdman cisevol fpattyn structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling cis-regulatory-evolution
	Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph [My Copy] PLoS Genet, Vol. 4, No. 10. (10 October 2008), e1000212. by Yonghui Wu, Prasanna R. Bhat, Timothy J. Close, Stefano Lonardi posted to no-tag by Ema on 2008-10-10 13:59:47 as along with 2 people zwang djkt
	Fast and accurate search for non-coding RNA pseudoknot structures in genomes [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2281-2287. by Zhibin Huang, Yong Wu, Joseph Robertson, Liang Feng, Russell L. Malmberg, Liming Cai posted to no-tag by Ema on 2008-10-06 15:14:05 as along with 6 people heliopais zanexu mhamada samgj djkt papamicd
	Integrated detection and population-genetic analysis of SNPs and copy number variation. [My Copy] Nature genetics, Vol. 40, No. 10. (7 October 2008), pp. 1166-1174. by Steven A. McCarroll, Finny G. Kuruvilla, Joshua M. Korn, et al.Simon Cawley, James Nemesh, Alec Wysoker, Michael H. Shapero, Paul I. de Bakker, Julian B. Maller, Andrew Kirby, Amanda L. Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J. Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W. Jones, Rich Rava, Mark J. Daly, Stacey B. Gabriel, David Altshuler posted to no-tag by Ema on 2008-10-01 14:29:45 as along with 21 people and 1 group frohike shikin vplagnol buyske turnersd sameersoi gruberjd Hans45 pdexheimer madreach waszak caseybrown rsantana Zephyrus psique jbsaltz misonneh djkt daed rdiaz guhjy Roswell Cancer Crosstalk
	nature07325.pdf (application/pdf Object) [My Copy] posted to no-tag by Ema on 2008-10-01 14:29:05 as
	Advancing Science through Conversations: Bridging the Gap between Blogs and the Academy [My Copy] PLoS Biol, Vol. 6, No. 9. (23 September 2008), e240. by Shelley A. Batts, Nicholas J. Anthis, Tara C. Smith posted to no-tag by Ema on 2008-09-22 23:53:24 as along with 22 people and 1 group reflist Sergey_gerbek applebyb sinhaa rolawren CameronNeylon Zephyrus lesikv pick600 Gaetan Scis0000002 silberbauer jrw fheintz fgibson nuin amarois hpiwowar druvus bcondon dullhunk Enro Roswell Cancer Crosstalk
	Strategies for Identifying RNA Splicing Regulatory Motifs and Predicting Alternative Splicing Events [My Copy] PLoS Comput Biol, Vol. 4, No. 1. (25 January 2008), e21. by Dirk Holste, Uwe Ohler posted to no-tag by Ema on 2008-09-18 13:42:24 as along with 5 people cabbagezs natstreet druvus giovenko xili03
	ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i24-31. by Thomas Abeel, Yvan Saeys, Pierre Rouze, Yves Van de Peer posted to no-tag by Ema on 2008-09-18 13:41:48 as along with 5 people and 1 group ilyashl natstreet gdb druvus Auger Dead 60's
	Shadow Enhancers as a Source of Evolutionary Novelty [My Copy] Science, Vol. 321, No. 5894. (5 September 2008), 1314. by Joung-Woo Hong, David A. Hendrix, Michael S. Levine posted to no-tag by Ema on 2008-09-14 20:45:33 as along with 16 people and 4 groups mjoach daveGerrard cisevol jfr rouault emptyhb dlobo sebastien_vigneau Stew bpcusack Zephyrus djkt natstreet isimpson maximilianh caseybrown BergmanLab TranscriptionalRegulationWithThermodynamicModels GEB Roswell Cancer Crosstalk
	GENETICS: Enhancing Gene Regulation [My Copy] Science, Vol. 321, No. 5894. (5 September 2008), pp. 1300-1301. by Gregory A. Wray, Courtney C. Babbitt posted to no-tag by Ema on 2008-09-14 20:45:18 as along with 7 people and 1 group jfr huiminC oelemento sebastien_vigneau bpcusack gracio isimpson BenosLab
	The short-sequence designs of isochores from the human genome — PNAS [My Copy] posted to no-tag by Ema on 2008-09-14 20:45:03 as
	Prevolutionary dynamics and the origin of evolution — PNAS [My Copy] posted to no-tag by Ema on 2008-09-14 20:35:31 as
	Identifying the Important HIV-1 Recombination Breakpoints [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000178. by John Archer, John W. Pinney, Jun Fan, et al.Etienne Simon-Loriere, Eric J. Arts, Matteo Negroni, David L. Robertson posted to no-tag by Ema on 2008-09-14 20:24:58 as along with 2 people friendpine oelemento
	Top-Down Analysis of Temporal Hierarchy in Biochemical Reaction Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000177. by Neema Jamshidi, Bernhard Palsson posted to no-tag by Ema on 2008-09-14 20:24:44 as along with 3 people JeremyZucker aramesh2 raik
	Preferentially Quantized Linker DNA Lengths in Saccharomyces cerevisiae [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000175. by Ji-Ping Wang, Yvonne Fondufe-Mittendorf, Liqun Xi, Guei-Feng Tsai, Eran Segal, Jonathan Widom posted to no-tag by Ema on 2008-09-14 20:24:35 as along with 1 person aalibes
	Identifying Cognate Binding Pairs among a Large Set of Paralogs: The Case of PE/PPE Proteins of Mycobacterium tuberculosis [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000174. by Robert Riley, Matteo Pellegrini, David Eisenberg posted to no-tag by Ema on 2008-09-14 20:24:24 as along with 2 people robfsouza chad_davis
	Sizing Up Allometric Scaling Theory [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000171. by Van M. Savage, Eric J. Deeds, Walter Fontana posted to no-tag by Ema on 2008-09-14 20:23:56 as along with 1 person vsavage
	Insights into Protein–DNA Interactions through Structure Network Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000170. by R. Sathyapriya, M. S. Vijayabaskar, Saraswathi Vishveshwara posted to no-tag by Ema on 2008-09-12 14:41:48 as along with 9 people and 1 group TRHvidsten svozil Zephyrus emptyhb aalibes AbnerCYH Totobox zwang hmk Roswell Cancer Crosstalk
	Trends between gene content and genome size in prokaryotic species with larger genomes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 9. (2 March 2004), pp. 3160-3165. by Konstantinos T. Konstantinidis, James M. Tiedje posted to no-tag by Ema on 2008-09-11 21:25:40 as along with 1 person michaelbarton
	The dynamic brain: from spiking neurons to neural masses and cortical fields. [My Copy] PLoS computational biology, Vol. 4, No. 8. (29 August 2008), e1000092. by Gustavo Deco, Viktor K. Jirsa, Peter A. Robinson, Michael Breakspear, Karl Friston posted to no-tag by Ema on 2008-09-11 19:00:34 as along with 9 people fbaroni sylvain_chevallier doncieux Scis0000002 dcoates markoffkin robotact fgibson flieder
	Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage [My Copy] Science, Vol. 309, No. 5736. (5 August 2005), pp. 938-940. by Jan Ihmels, Sven Bergmann, Maryam Gerami-Nejad, et al.Itai Yanai, Mark McClellan, Judith Berman, Naama Barkai posted to no-tag by Ema on 2008-09-10 18:20:02 as along with 11 people and 3 groups hge balabu roys aalibes monod arve marcius adepace entropy janek04 emptyhb EisenLab BioinfoCIPF SGU-CIPF
	Reconstruction of ancestral protein sequences and its applications [My Copy] BMC Evolutionary Biology, Vol. 4, No. 1. (2004), 33. by Wei Cai, Jimin Pei, Nick Grishin posted to no-tag by Ema on 2008-09-09 13:38:35 as along with 4 people tomatoe45 dfdong cmzmasek druvus
	Just-in-time assembly of cell-cycle protein complexes : Nature Precedings [My Copy] posted to no-tag by Ema on 2008-09-09 13:38:22 as
	A General Definition and Nomenclature for Alternative Splicing Events [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000147. by Michael Sammeth, Sylvain Foissac, Roderic Guigó posted to no-tag by Ema on 2008-09-05 15:56:08 as along with 8 people and 1 group malcook treangen madreach sabahkadri bootsy jm12 brianb wutongbin BenosLab
	Classifying RNA-Binding Proteins Based on Electrostatic Properties [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000146. by Shula Shazman, Yael Mandel-Gutfreund posted to no-tag by Ema on 2008-09-05 15:55:50 as along with 1 person zwang
	Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 18. (15 September 2008), pp. 2044-2050. by Markus W. Covert, Nan Xiao, Tiffany J. Chen, Jonathan R. Karr posted to no-tag by Ema on 2008-09-05 15:45:10 as along with 6 people schwartzjmc pjmaybank abhishek_tiwari kalvala guhjy nuin
	Local graph alignment and motif search in biological networks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 41. (12 October 2004), pp. 14689-14694. by Johannes Berg, Michael Lässig posted to no-tag by Ema on 2008-09-05 15:41:55 as along with 4 people and 1 group ilyashl camster alexisgallagher ssb dbk-lab
	A critique of the molecular target-based drug discovery paradigm based on principles of metabolic control: Advantages of pathway-based discovery. [My Copy] Metab Eng (20 September 2007) by Marc K K. Hellerstein posted to no-tag by Ema on 2008-09-05 15:12:29 as along with 5 people and 2 groups guhjy Zephyrus barry msierk cmmorel Roswell Cancer Crosstalk McCammon
	The intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins — PNAS [My Copy] posted to no-tag by Ema on 2008-08-21 19:27:31 as
	A Dynamic Stochastic Model for DNA Replication Initiation in Early Embryos [My Copy] PLoS ONE, Vol. 3, No. 8. (2008), e2919. by Arach Goldar, Hélène Labit, Kathrin Marheineke, Olivier Hyrien posted to no-tag by Ema on 2008-08-21 19:26:26 as
	Bioinformatics and cancer target discovery. [My Copy] Drug discovery today, Vol. 9, No. 18. (15 September 2004), pp. 795-802. by B. Desany, Z. Zhang posted to no-tag by Ema on 2008-08-21 03:14:04 as
	Genetic Variation in an Individual Human Exome [My Copy] PLoS Genet In PLoS Genet, Vol. 4, No. 8. (15 August 2008), e1000160. by Pauline C. Ng, Samuel Levy, Jiaqi Huang, et al.Timothy B. Stockwell, Brian P. Walenz, Kelvin Li, Nelson Axelrod, Dana A. Busam, Robert L. Strausberg, J. Craig Venter posted to no-tag by Ema on 2008-08-16 18:58:43 as along with 14 people n00c Peiyong giovanni jasontsai lp2 daforerog xingxu madreach misonneh djkt bpcusack caseybrown guhjy reyez
	Regulatory Control and the Costs and Benefits of Biochemical Noise [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 4, No. 8. (15 August 2008), e1000125. by Sorin Tănase-Nicola, Pieter R. ten Wolde posted to no-tag by Ema on 2008-08-16 18:58:28 as along with 2 people klo jjray
	Geometric interpretation of gene coexpression network analysis. [My Copy] PLoS computational biology, Vol. 4, No. 8. (15 August 2008), e1000117. by Steve Horvath, Jun Dong posted to no-tag by Ema on 2008-08-16 18:58:11 as along with 22 people jeremymiller zufar dolchan sficklin isimpson rdiaz guhjy cswinburne jfr ptrobajo pengchy nolodie druvus aramesh2 kengg roys tmmurali Borelli Totobox AbnerCYH davidchavalarias caseybrown
	Lakeside Cemeteries in the Sahara: 5000 Years of Holocene Population and Environmental Change [My Copy] PLoS ONE, Vol. 3, No. 8. (2008), e2995. by Paul C. Sereno, Elena A. Garcea, Hélène Jousse, et al.Christopher M. Stojanowski, Jean-François Saliège, Abdoulaye Maga, Oumarou A. Ide, Kelly J. Knudson, Anna M. Mercuri, Thomas W. Stafford, Thomas G. Kaye, Carlo Giraudi, Isabella M. N'siala, Enzo Cocca, Hannah M. Moots, Didier B. Dutheil, Jeffrey P. Stivers posted to no-tag by Ema on 2008-08-15 13:29:57 as
	Segment-based multiple sequence alignment [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i187-192. by Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Doring, Cedric Notredame, Knut Reinert posted to no-tag by Ema on 2008-08-12 13:15:44 as along with 9 people nuin BioNica darian Md_2007 zwang APRegier djkt aprasad groepl
	Optimal spliced alignments of short sequence reads. [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Rätsch posted to no-tag by Ema on 2008-08-12 13:15:31 as along with 13 people and 1 group ongenetics GustavoLacerda darshan n00c natstreet druvus lukaswindhager malcook jmcq nmohelli caseybrown cthachuk Neeperando SIMR bioinformatics
	PAML 4: phylogenetic analysis by maximum likelihood. [My Copy] Molecular biology and evolution, Vol. 24, No. 8. (1 August 2007), pp. 1586-1591. by Ziheng Yang posted to no-tag by Ema on 2008-08-12 08:26:48 as along with 13 people and 1 group ckenaley biomcgary michaelbarton dquest druvus operon akifumi hdopazo BioNica stajich ryanraaum RamuAnandakrishnan CharlesM Mycology
	Toward Automatic Reconstruction of a Highly Resolved Tree of Life [My Copy] Science, Vol. 311, No. 5765. (3 March 2006), pp. 1283-1287. by Francesca D. Ciccarelli, Tobias Doerks, Christian von Mering, Christopher J. Creevey, Berend Snel, Peer Bork posted to no-tag by Ema on 2008-08-12 08:07:45 as along with 21 people and 6 groups darian pablocarb cmura adampah druvus fhsantanna kinestetika dparks Retchless knaseanka dpollard tny dchughes nirfriedman cmm azazello wenhan maximilianh cmzmasek lonshy diamantis microbiology_nijmegen EisenLab FAB-lab G4ID Genetics-of-Gambling MBLAB
	The incoherent feed-forward loop can generate non-monotonic input functions for genes [My Copy] Mol Syst Biol, Vol. 4 (15 July 2008) by Shai Kaplan, Anat Bren, Erez Dekel, Uri Alon posted to no-tag by Ema on 2008-08-06 18:02:20 as along with 1 person austin
	Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size [My Copy] Mol Syst Biol, Vol. 4 (2008) by Jingshan Zhang, Sergei Maslov, Eugene I. Shakhnovich posted to no-tag by Ema on 2008-08-06 18:02:07 as along with 7 people kiekyon TRHvidsten jjray akraemer grahamc zwang biehl
	High-order combination effects and biological robustness [My Copy] Mol Syst Biol, Vol. 4 (2008) by Joseph Lehar, Andrew Krueger, Grant Zimmermann, Alexis Borisy posted to no-tag by Ema on 2008-08-06 18:01:48 as along with 11 people niallhaslam colmryan ipark-kaist frohike michaelbarton tomhebbron guhjy tmmurali pengchy bootsy jjray
	MUSCLE: a multiple sequence alignment method with reduced time and space complexity [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004), 113. by Robert Edgar posted to no-tag by Ema on 2008-08-04 13:51:21 as along with 30 people and 5 groups tomatoe45 rneches gwallau OscarLopez ivanffcc Helenita Joaquin kmma13 khlevy Pal tomjad mgomes hryk BioNica natstreet Md_2007 sebk wallacei knaseanka chrn jwm balajis gbart caporaso sriram_s cdallett sanchezbuelna timflutre gisle urgi LabDros References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp

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