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Enro's pubmed-mining [39 articles]

Recent papers added to Enro's library classified by the tag pubmed-mining. You can also see everyone's pubmed-mining.
  • Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results
    Journal of Biomedical Discovery and Collaboration, Vol. 3 (15 February 2008), 2.
    by Neil R Smalheiser, Wei Zhou, Vetle I Torvik
    posted to pubmed-mining by Enro on 2008-04-07 09:07:48 as ** along with 4 people jyuh Gaetan spinaltap526 yas
  • A quantitative model for linking two disparate sets of articles in MEDLINE
    Bioinformatics (26 April 2007), btm161.
    by Vetle I Torvik, Neil R Smalheiser
    posted to knowledge-discovery pubmed-mining by Enro on 2007-06-29 14:57:03 as ** along with 4 people and 1 group jyuh yas dullhunk florianleitner T_lab
  • MedMiner: An Internet Tool for Filtering and Organizing Gene Expression and Pharmacological Information
    by L Tanabe, U Scherf, L Smith, J Lee, L Hunter, J Weinstein
    posted to pubmed-mining by Enro on 2006-12-28 17:26:57 as ** along with 1 person and 1 group bundschu generif_paper
  • Imitating Manual Curation of Text-Mined Facts in Biomedicine.
    PLoS Comput Biol, Vol. 2, No. 9. (8 September 2006)
    by Raul Rodriguez-Esteban, Ivan Iossifov, Andrey Rzhetsky
    posted to pubmed-mining text-mining by Enro on 2006-12-28 17:25:54 as ** along with 3 people and 1 group jfr yas dullhunk T_lab
  • ADAM: another database of abbreviations in MEDLINE
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2813-2818.
    by Wei Zhou, Vetle I Torvik, Neil R Smalheiser
    posted to pubmed-mining by Enro on 2006-11-05 08:07:06 as **
  • PubFocus: Semantic MEDLINE/PubMed citations analytics through integration of controlled biomedical dictionaries and ranking algorithm
    BMC Bioinformatics, Vol. 7 (02 October 2006), 424.
    by Maksim V Plikus, Zina Zhang, Cheng-Ming Chuong
    posted to citation-databases pubmed-mining by Enro on 2006-10-06 13:28:19 as ** along with 5 people and 2 groups irenas yas dullhunk Gaetan adoms dbk-lab T_lab
  • Using the biological taxonomy to access biological literature with PathBinderH
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2560-2562.
    by J Ding, K Viswanathan, D Berleant, L Hughes, E Wurtele, D Ashlock, J Dickerson, A Fulmer, P Schnable
    posted to pubmed-mining by Enro on 2006-09-05 13:56:33 as **
  • notes Automatic document classification of biological literature
    BMC Bioinformatics, Vol. 7 (07 August 2006), 370.
    by David Chen, Hans-Michael Muller, Paul W Sternberg
    posted to pubmed-mining text-mining by Enro on 2006-09-05 08:07:21 as ** along with 4 people and 3 groups tharris irenas yas ananthrk C. elegans / WormBase dbk-lab T_lab
  • Using literature and data to learn Bayesian networks as clinical models of ovarian tumors.
    Artif Intell Med, Vol. 30, No. 3. (March 2004), pp. 257-281.
    by P Antal, G Fannes, D Timmerman, Y Moreau, B De Moor
    posted to pubmed-mining by Enro on 2006-09-05 08:02:57 as ** along with 1 person route145
  • Automatic extraction of mutations from Medline and cross-validation with OMIM
    Nucl. Acids Res., Vol. 32, No. 1. (2 January 2004), pp. 135-142.
    by Dietrich Rebholz-Schuhmann, Stephane Marcel, Sylvie Albert, Ralf Tolle, Georg Casari, Harald Kirsch
    posted to pubmed-mining by Enro on 2006-09-05 07:58:24 as ** along with 3 people and 2 groups yas t11 caporaso T_lab biomedical-nlp
  • botXminer: mining biomedical literature with a new web-based application.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by U Mudunuri, R Stephens, D Bruining, D Liu, FJ Lebeda
    posted to pubmed-mining by Enro on 2006-07-26 09:30:14 as ** along with 2 people and 1 group jyuh yas T_lab
  • Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interations
    (2006)
    by Tobias Kuhn, Loïc Royer, Norbert E Fuchs, Michael Schroeder1
    edited by Ulf Leser, Barbara Eckman, Felix Namann
    posted to pubmed-mining by Enro on 2006-07-26 09:23:41 as **
  • Text-mining and information-retrieval services for molecular biology.
    Genome Biol, Vol. 6, No. 7. (2005)
    by M Krallinger, A Valencia
    posted to pubmed-mining by Enro on 2006-04-20 14:52:05 as ** along with 9 people and 6 groups fisherp irenas carlblesius textoris yas caporaso shimah78us cjeans spinaltap526 dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab biomedical-nlp
  • Status of text-mining techniques applied to biomedical text
    Drug Discovery Today, Vol. 11, No. 7-8. (April 2006), pp. 315-325.
    by Ramon A Erhardt, Reinhard Schneider, Christian Blaschke
    posted to pubmed-mining by Enro on 2006-04-03 07:04:48 as ** along with 8 people and 1 group jyuh hpiwowar ibuch mroos TheresaNiederberger akastrin aliekens irenas AID
  • PubFinder: a tool for improving retrieval rate of relevant PubMed abstracts.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by T Goetz, CW von der Lieth
    posted to pubmed-mining by Enro on 2006-03-28 18:14:58 as ** along with 4 people and 1 group yas jodi Carol_Perryman adoms T_lab
  • Computing fuzzy associations for the analysis of biological literature.
    Biotechniques, Vol. 32, No. 6. (June 2002)
    by C Perez-Iratxeta, HS Keer, P Bork, MA Andrade
    posted to pubmed-mining by Enro on 2006-01-31 11:06:03 as ** along with 1 person miguel
  • Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families.
    Bioinformatics, Vol. 14, No. 7. (1998), pp. 600-607.
    by MA Andrade, A Valencia
    posted to pubmed-mining by Enro on 2006-01-31 11:05:46 as ** along with 1 person miguel
  • Beyond the clause: extraction of phosphorylation information from medline abstracts.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by M Narayanaswamy, KE Ravikumar, K Vijay-Shanker
    posted to pubmed-mining by Enro on 2006-01-31 11:05:28 as ** along with 3 people miguel zlu neils
  • Automatic extraction of biological information from scientific text: protein-protein interactions.
    Proc Int Conf Intell Syst Mol Biol (1999), pp. 60-67.
    by C Blaschke, MA Andrade, C Ouzounis, A Valencia
    posted to pubmed-mining by Enro on 2006-01-31 11:04:34 as ** along with 6 people and 3 groups miguel yas helliontroy bundschu TheresaNiederberger satre T_lab biomedical-nlp generif_paper
  • XplorMed: a tool for exploring MEDLINE abstracts.
    Trends Biochem Sci, Vol. 26, No. 9. (September 2001), pp. 573-575.
    by C Perez-Iratxeta, P Bork, MA Andrade
    posted to pubmed-mining by Enro on 2006-01-31 11:04:00 as ** along with 3 people and 1 group miguel yas fisherp T_lab
  • Automated extraction of information in molecular biology.
    FEBS Lett, Vol. 476, No. 1-2. (30 June 2000), pp. 12-17.
    by MA Andrade, P Bork
    posted to pubmed-mining by Enro on 2006-01-31 11:00:49 as ** along with 2 people and 1 group miguel yas T_lab
  • BioContrasts: extracting and exploiting protein-protein contrastive relations from biomedical literature.
    Bioinformatics (20 December 2005)
    by Jung-Jae J Kim, Zhuo Zhang, Jong C C Park, See-Kiong K Ng
    posted to pubmed-mining by Enro on 2006-01-31 10:59:27 as ** along with 2 people and 1 group miguel yas T_lab
  • Literature mining for the biologist: from information retrieval to biological discovery
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 119-129.
    by Lars J Jensen, Jasmin Saric, Peer Bork
    posted to literature-mining pubmed-mining by Enro on 2006-01-30 14:30:39 as ** along with 26 people and 3 groups yggdrasil jyuh kuhn yas dullhunk hpiwowar dgront caporaso zlu jacky957 lynnefox jdiggans cjeans ghattem michaelmampaey dejori jandot mircea farzanehs larsjuhljensen adoms skumagai TheresaNiederberger satre akastrin ibuch T_lab biomedical-nlp ADMiRes
  • Accomplishments and challenges in literature data mining for biology.
    Bioinformatics, Vol. 18, No. 12. (December 2002), pp. 1553-1561.
    by L Hirschman, JC Park, J Tsujii, L Wong, CH Wu
    posted to literature-mining pubmed-mining by Enro on 2005-12-14 14:59:23 as ** along with 7 people and 6 groups irenas yas benny kehan caporaso vlachmore satre dbk-lab biodiversity_conservation Bioinformatics T_lab biomedical-nlp GrassBase
  • Text mining: Generating hypotheses from MEDLINE
    Journal of the American Society for Information Science and Technology, Vol. 55, No. 5. (16 December 2003), pp. 396-413.
    by Padmini Srinivasan
    posted to bibliographic-databases literature-mining pubmed-mining by Enro on 2005-12-14 14:55:25 as ** along with 4 people and 1 group route145 yas fisherp sentausa T_lab
  • Hairpins in bookstacks: Information retrieval from biomedical text
    Briefings in Bioinformatics, Vol. 6, No. 3. (September 2005), pp. 222-238.
    by Hagit Shatkay
    posted to literature-mining pubmed-mining by Enro on 2005-12-14 10:15:24 as ** along with 1 person benny
  • Improving literature based discovery support by genetic knowledge integration.
    Stud Health Technol Inform, Vol. 95 (2003), pp. 68-73.
    by D Hristovski, B Peterlin, JA Mitchell, SM Humphrey
    posted to pubmed-mining by Enro on 2005-11-28 12:36:48 as ** along with 2 people and 1 group BioGeek waltsb PBRC_HGL
  • Content-rich biological network constructed by mining PubMed abstracts
    BMC Bioinformatics, Vol. 5 (2004), 147.
    by Hao Chen, Burt M Sharp
    posted to pubmed-mining by Enro on 2005-11-27 22:43:47 as ** along with 2 people and 1 group irenas daniel_schober dbk-lab
  • PreBIND and Textomy – mining the biomedical literature for protein-protein interactions using a support vector machine
    BMC Bioinformatics, Vol. 4 (2003), 11.
    by Ian Donaldson, Joel Martin, Berry de Bruijn, Cheryl Wolting, Vicki Lay, Brigitte Tuekam, Shudong Zhang, Berivan Baskin, Gary D Bader, Katerina Michalickova, Tony Pawson, Christopher W Hogue
    posted to pubmed-mining by Enro on 2005-11-27 22:43:13 as ** along with 1 person and 1 group irenas dbk-lab
  • CoPub Mapper: mining MEDLINE based on search term co-publication
    BMC Bioinformatics, Vol. 6 (2005), 51.
    by Blaise T Alako, Antoine Veldhoven, Sjozef van Baal, Rob Jelier, Stefan Verhoeven, Ton Rullmann, Jan Polman, Guido Jenster
    posted to pubmed-mining by Enro on 2005-11-27 22:42:58 as ** along with 1 person and 1 group irenas dbk-lab
  • Snowball: a prototype system for extracting relations from large text collections
    Vol. 30, No. 2. (June 2001)
    by Eugene Agichtein, Luis Gravano, Jeff Pavel, Viktoriya Sokolova, Aleksandr Voskoboynik
    posted to pubmed-mining by Enro on 2005-11-27 22:42:27 as ** along with 2 people and 1 group irenas topher dbk-lab
  • MedlineR: an open source library in R for Medline literature data mining.
    Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3659-3661.
    by SM Lin, P McConnell, KF Johnson, J Shoemaker
    posted to pubmed-mining by Enro on 2005-11-27 22:42:16 as ** along with 5 people and 2 groups cisevol druvus irenas BioGeek za BergmanLab dbk-lab
  • Mining the biomedical literature in the genomic era: an overview.
    J Comput Biol, Vol. 10, No. 6. (2003), pp. 821-855.
    by H Shatkay, R Feldman
    posted to pubmed-mining by Enro on 2005-11-27 22:42:04 as ** along with 8 people and 3 groups cisevol irenas miguel yas benny balex adoms aheilbut BergmanLab dbk-lab T_lab
  • Getting to the (c)ore of knowledge: mining biomedical literature.
    Int J Med Inform, Vol. 67, No. 1-3. (4 December 2002), pp. 7-18.
    by B de Bruijn, J Martin
    posted to pubmed-mining by Enro on 2005-11-27 22:41:43 as ** along with 3 people and 2 groups irenas yas hpiwowar dbk-lab T_lab
  • BioRAT: extracting biological information from full-length papers.
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3206-3213.
    by DP Corney, BF Buxton, WB Langdon, DT Jones
    posted to pubmed-mining by Enro on 2005-11-27 22:41:07 as ** along with 9 people and 5 groups camster snuppepuppan irenas jyuh A_Olympia helliontroy massivemayhem sobolevnrm satre Philosophy_of_Information dbk-lab Blog_and_Wiki_Research biomedical-nlp baker-group
  • Biomedical literature mining: challenges and solutions in the 'omics' era.
    Am J Pharmacogenomics, Vol. 4, No. 6. (2004), pp. 383-393.
    by D Chaussabel
    posted to pubmed-mining by Enro on 2005-11-27 22:40:46 as ** along with 4 people and 1 group irenas andytseng qfwills daniel_schober dbk-lab
  • MedKit: a helper toolkit for automatic mining of MEDLINE/PubMed citations.
    Bioinformatics, Vol. 21, No. 5. (1 March 2005), pp. 694-695.
    by J Ding, D Berleant
    posted to pubmed-mining by Enro on 2005-11-27 22:40:32 as ** along with 2 people and 1 group irenas jyuh dbk-lab
  • Extracting human protein interactions from MEDLINE using a full-sentence parser.
    Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 604-611.
    by N Daraselia, A Yuryev, S Egorov, S Novichkova, A Nikitin, I Mazo
    posted to pubmed-mining by Enro on 2005-11-27 22:39:57 as ** along with 5 people and 1 group irenas miguel natsu zlu satre dbk-lab
  • MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling.
    Biotechniques, Vol. 27, No. 6. (December 1999)
    by L Tanabe, U Scherf, LH Smith, JK Lee, L Hunter, JN Weinstein
    posted to pubmed-mining by Enro on 2005-11-27 22:37:31 as ** along with 3 people and 2 groups irenas yas simmie dbk-lab T_lab
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