Garamonfok's promotors [33 articles] Export Sort

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	Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2473-2477. by Antonio Marco, Charlotte Konikoff, Timothy L. Karr, Sudhir Kumar posted to promotors printed drosophila coexpression by Garamonfok on 2009-10-19 15:26:24 as along with 9 people and 1 group bsamal TRHvidsten djkt rdiaz natstreet nuin sebastien_vigneau maximilianh isimpson Jarman Lab
	Inference of Positive and Negative Selection on the 5' Regulatory Regions of Drosophila Genes [My Copy] Mol Biol Evol, Vol. 21, No. 2. (1 February 2004), pp. 374-383. by Michael H. Kohn, Shu Fang, Chung-I Wu posted to drosophila positiveselection promotors by Garamonfok on 2009-07-29 10:33:33 as along with 2 people and 2 groups adepace cisevol EisenLab cis-regulatory-evolution
	Detecting selection in noncoding regions of nucleotide sequences. [My Copy] Genetics, Vol. 167, No. 2. (June 2004), pp. 949-958. by W. S. Wong, R. Nielsen posted to positiveselection promotors by Garamonfok on 2009-07-23 18:37:34 as along with 2 people and 1 group djkt cisevol cis-regulatory-evolution
	The effects of protein interactions, gene essentiality and regulatory regions on expression variation. [My Copy] BMC systems biology, Vol. 2 (2008) by L. Zhou, X. Ma, F. Sun posted to promotors project_coexcoev printed interaction expression evolution by Garamonfok on 2008-10-27 15:24:00 as
	The gene regulatory logic of transcription factor evolution. [My Copy] Trends in ecology & evolution (Personal edition) (21 May 2008) by Günter P P. Wagner, Vincent J J. Lynch posted to evolution promotors by Garamonfok on 2008-07-20 10:59:49 as along with 5 people bmajoros cambray maximilianh Stew bpcusack
	Evolvability and hierarchy in rewired bacterial gene networks [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845. by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, et al.Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano posted to promotors printed expression evolution duplication bacteria by Garamonfok on 2008-04-25 11:23:09 as along with 26 people and 4 groups Asclepius yyfwuhan biomcgary megraw chica jimineep balabu kaarsinogen aalibes tmmurali dullhunk neils cmzmasek AbnerCYH josedavid biehl caseybrown austin hryk dbikard cactus margaritis chad_davis michaelbarton aheilbut zwang GEB Centre de Recherches Interdisciplinaires SynBioSys BergmanLab
	Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes [My Copy] Trends in Genetics, Vol. 21, No. 4. (April 2005), pp. 207-210. by Charles Plessy, Thomas Dickmeis, Frédéric Chalmel, Uwe Strähle posted to vertebrates promotors printed evolution by Garamonfok on 2008-03-11 10:42:27 as along with 1 person tonamswish
	Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites [My Copy] PLoS Comput Biol, Vol. 4, No. 1. (11 January 2008), e7. by Daniela Raijman, Ron Shamir, Amos Tanay posted to evolution promotors by Garamonfok on 2008-01-25 20:03:47 as along with 8 people and 1 group marck xili03 aalibes sebastien_vigneau lusk nklee maximilianh emptyhb BioinfoCIPF
	Clusters of Co-expressed Genes in Mammalian Genomes Are Conserved by Natural Selection [My Copy] Molecular Biology and Evolution, Vol. 22, No. 3. (March 2005), pp. 767-775. by Gregory A. C. Singer, Andrew T. Lloyd, Lukasz B. Huminiecki, Kenneth H. Wolfe posted to coevolution coexpression evolution expression genome promotors by Garamonfok on 2007-11-09 17:17:18 as along with 2 people jeremymiller JeffR100
	Phylogenetic simulation of promoter evolution: estimation and modeling of binding site turnover events and assessment of their impact on alignment tools. [My Copy] Genome biology, Vol. 8, No. 10. (24 October 2007), R225. by Weichun Huang, Joseph R. Nevins, Uwe Ohler posted to tools promotors printed genome evolution by Garamonfok on 2007-10-26 10:37:37 as along with 5 people and 2 groups lusk dpollard djkt stajich maximilianh EisenLab cis-regulatory-evolution
	Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression [My Copy] Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560. by Christopher D. Brown, David S. Johnson, Arend Sidow posted to worms promotors project_coexcoev printed expression evolution by Garamonfok on 2007-10-24 12:40:19 as along with 11 people and 2 groups provero pradiptaray dpollard djkt joepickrell zwang Stew mimulus_99 maximilianh cisevol emptyhb EisenLab cis-regulatory-evolution
	Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution. [My Copy] Nature genetics, Vol. 39, No. 9. (12 September 2007), pp. 1140-1144. by Ralph Haygood, Olivier Fedrigo, Brian Hanson, Ken-Daigoro D. Yokoyama, Gregory A. Wray posted to evolution genome promotors by Garamonfok on 2007-10-23 16:19:05 as along with 8 people and 4 groups provero brembs dchughes djkt mimulus_99 cisevol candypmcg mjoach G4ID Genetics-of-Gambling cis-regulatory-evolution Fasting, food and evolution
	Revealing posttranscriptional regulatory elements through network-level conservation. [My Copy] PLoS Comput Biol, Vol. 1, No. 7. (December 2005) by C. S. Chan, O. Elemento, S. Tavazoie posted to evolution mirna promotors by Garamonfok on 2007-10-16 17:37:20 as along with 5 people and 1 group thegoose2 tharris balicea koller grahamc C. elegans / WormBase
	Prediction and validation of microRNAs and their targets. [My Copy] FEBS Lett, Vol. 579, No. 26. (31 October 2005), pp. 5904-5910. by I. Bentwich posted to method mirna promotors statistics by Garamonfok on 2007-10-16 15:34:07 as along with 5 people and 2 groups heliopais jfr mortenlindow mtagaya cdawson microRNA GIG
	How microRNAs choose their targets [My Copy] Nat Genet, Vol. 39, No. 10. (October 2007), pp. 1191-1192. by Ivo L. Hofacker posted to mirna mrna-structure promotors by Garamonfok on 2007-10-11 14:54:19 as along with 7 people and 2 groups jfr dchughes rdiaz ealloza epigenetics heliopais yavanna microRNA BioinfoCIPF
	Spatial preferences of microRNA targets in 3' untranslated regions [My Copy] BMC Genomics, Vol. 8 (07 June 2007), 152. by William H. Majoros, Uwe Ohler posted to genome mirna promotors by Garamonfok on 2007-10-11 11:21:59 as along with 3 people and 1 group andersbj heliopais jfr microRNA
	Inference of miRNA targets using evolutionary conservation and pathway analysis. [My Copy] BMC bioinformatics, Vol. 8 (01 March 2007), 69. by Dimos Gaidatzis, Erik van Nimwegen, Jean Hausser, Mihaela Zavolan posted to evolution method mirna promotors statistics by Garamonfok on 2007-10-11 11:02:51 as along with 9 people and 1 group daforerog ealloza jfr Lauren_Jones tardigrade andersbj dquest heliopais maralena microRNA
	Intronic microRNA precursors that bypass Drosha processing. [My Copy] Nature, Vol. 448, No. 7149. (5 July 2007), pp. 83-86. by J. Graham Ruby, Calvin H. Jan, David P. Bartel posted to mirna promotors by Garamonfok on 2007-10-10 12:59:37 as along with 14 people and 5 groups guhjy giovenko galka8_diploma thegoose2 daforerog omegas GustavoLacerda tharris dpollard gpalidwor andersbj stajich ale tolot27 C. elegans / WormBase Bioinformatics EisenLab microRNA Mycology
	Natural selection on human microRNA binding sites inferred from SNP data [My Copy] Nature Genetics, Vol. 38, No. 12. (29 October 2006), pp. 1452-1456. by Kevin Chen, Nikolaus Rajewsky posted to evolution mirna promotors snp by Garamonfok on 2007-10-05 13:12:34 as along with 14 people and 3 groups songpku emptyhb provero capitall lp2 jfr tardigrade andersbj mtagaya ealloza plofje heliopais bpcusack ramensky Bioinformatics microRNA BioinfoCIPF
	microRNA target predictions in animals [My Copy] Nature Genetics, Vol. 38 Suppl 1, No. 6s. (30 May 2006), pp. S8-S13. by Nikolaus Rajewsky posted to evolution mirna promotors tools by Garamonfok on 2007-10-05 13:06:13 as along with 12 people and 5 groups danaiancu thegoose Stew jfr marcius balicea andersbj mtagaya chenlc03 physics heliopais maralena Bioinformatics - CRUK Bioinformatics microRNA BioinfoCIPF SGU-CIPF
	Adaptive evolution of Hox-gene homeodomains after cluster duplications [My Copy] BMC Evolutionary Biology, Vol. 6 (01 November 2006), 86. by Vincent J. Lynch, Jutta J. Roth, Gunter P. Wagner posted to evolution promotors by Garamonfok on 2007-10-04 16:17:12 as
	The evolution of gene regulation by transcription factors and microRNAs [My Copy] Nature Reviews Genetics, Vol. 8, No. 2. (01 February 2007), pp. 93-103. by Kevin Chen, Nikolaus Rajewsky posted to evolution mirna promotors by Garamonfok on 2007-10-01 19:26:17 as along with 24 people and 4 groups heliopais guhjy antonkratz qfwills vvoorr aprasad jfr indigoviolet tardigrade andersbj dchughes emilyhare penka cdawson aswin plofje dbikard joepickrell EeHawk3 jayster4 dandaman maralena bootsy robertkofler EisenLab microRNA Nie GIG
	Transcription Factor Map Alignment of Promoter Regions [My Copy] PLoS Computational Biology, Vol. 2, No. 5. (1 May 2006), e49. by Enrique Blanco, Xavier Messeguer, Temple F. Smith, Roderic Guigó posted to promotors printed evolution by Garamonfok on 2007-09-24 18:34:45 as along with 2 people reidy GustavoLacerda
	ABS: a database of Annotated regulatory Binding Sites from orthologous promoters. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by E. Blanco, D. Farré, M. M. Albà, X. Messeguer, R. Guigó posted to tools promotors printed evolution database by Garamonfok on 2007-09-24 18:31:58 as along with 3 people Schmidtc treangen guhjy
	Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data. [My Copy] Genome Res, Vol. 17, No. 6. (June 2007), pp. 775-786. by D. C. King, J. Taylor, Y. Zhang, et al.Y. Cheng, H. A. Lawson, J. Martin, , F. Chiaromonte, W. Miller, R. C. Hardison posted to promotors printed evolution encode by Garamonfok on 2007-09-24 18:27:23 as along with 2 people and 2 groups ghattem Stew Bioinformatics UH - Computational Biology
	Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome [My Copy] Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 720-731. by Nathan D. Trinklein, Ulas Karaoz, Jiaqian Wu, et al.Anason Halees, Force, Patrick J. Collins, Deyou Zheng, Zhengdong D. Zhang, Mark B. Gerstein, Michael Snyder, Richard M. Myers, Zhiping Weng posted to promotors printed evolution encode by Garamonfok on 2007-09-24 18:20:35 as along with 5 people guhjy djkt olympos cjeans jasonflannick
	Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene [My Copy] Nature, Vol. 440, No. 7087., pp. 1050-1053. by Benjamin Prud'homme, Nicolas Gompel, Antonis Rokas, et al.Victoria A. Kassner, Thomas M. Williams, Shu-Dan Yeh, John R. True, Sean B. Carroll posted to promotors by Garamonfok on 2007-09-24 14:56:10 as along with 8 people and 1 group RMGraze dpollard balicea tny adepace ranb blobbybirdman emptyhb EisenLab
	Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments [My Copy] BMC Bioinformatics, Vol. 7 (14 August 2006), 376. by Daniel A. Pollard, Alan M. Moses, Venky N. Iyer, Michael B. Eisen posted to evolution promotors statistics by Garamonfok on 2007-09-24 14:48:30 as along with 6 people and 2 groups aprasad dpollard lusk lilou cisevol emptyhb EisenLab cis-regulatory-evolution
	MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model. [My Copy] Genome Biol, Vol. 5, No. 12. (2004) by A. M. Moses, D. Y. Chiang, D. A. Pollard, V. N. Iyer, M. B. Eisen posted to evolution promotors statistics tools by Garamonfok on 2007-09-24 14:23:37 as along with 4 people and 2 groups tuck indigoviolet lusk cisevol EisenLab cis-regulatory-evolution
	Distribution and intensity of constraint in mammalian genomic sequence. [My Copy] Genome Res, Vol. 15, No. 7. (July 2005), pp. 901-913. by G. M. Cooper, E. A. Stone, G. Asimenos, E. D. Green, S. Batzoglou, A. Sidow posted to evolution genome promotors statistics tools by Garamonfok on 2007-09-10 16:59:27 as along with 6 people druvus operon aprasad nirfriedman JeffR100 tale
	Genomic regulatory regions: insights from comparative sequence analysis [My Copy] Current Opinion in Genetics & Development, Vol. 13, No. 6. (December 2003), pp. 604-610. by Gregory M. Cooper, Arend Sidow posted to evolution promotors statistics tools by Garamonfok on 2007-09-10 15:09:15 as
	Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes. [My Copy] BMC Genomics, Vol. 6 (27 November 2005) by S. Lee, I. Kohane, S. Kasif posted to evolution promotors by Garamonfok on 2007-09-04 12:38:39 as along with 2 people and 1 group dpollard balicea EisenLab
	Housekeeping genes tend to show reduced upstream sequence conservation [My Copy] Genome Biology, Vol. 8 (13 July 2007), R140. by Domenec Farré, Nicolas Bellora, Loris Mularoni, Xavier Messeguer, Mar posted to evolution promotors by Garamonfok on 2007-09-03 15:08:40 as along with 6 people and 3 groups daveGerrard inesdesantiago treangen djkt cisevol gjuggler Bioinformatics cis-regulatory-evolution BergmanLab

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evolution	120
printed	79
tools	41
promotors	33
mirna	33
positiveselection	29
expression	28
cancer	23
genome	23
statistics	22
mammals	17
coexpression	13
coevolution	12
human	11
drosophila	11
aberations	11
paml	10
function	9
project_coexcoev	8
cgh	8
adaptiveevolution	8
hyphy	8
project_funcanalysis	8
method	7
encode	6
interaction	6
snp	5
adaptativeevolution	5
database	5
gerp	5
annotation	4
signatures	4
naturalselection	4
recombination	4
go	4
population_genomics	4
oddscore	3
review	3
neutral	3
project_ratemutanalysismamals	3
mrna-structure	3
fusion	3
sex	3
phenotypes	3
bacteria	3
colocalisation	3
pathway	3
rate	3
phylome	3
primates	3
duplication	3
affymetrix500k	2
metabolic_network	2
bgc	2
gccontent	2
nonconding	2
ortholog_paralog	2
mendelian	2
immuno	2
disease	2
worms	2
noncoding	2
ngs	2
vertebrates	2
generalknowledge	2
rrtree	2
modules	2
phylogeny	2
vertebrate	2
fst	2
adaptation	2
branch-site	2
chromatinestructure	1
butterflies	1
longest_not_better	1
exon	1
neoselectionism	1
rejectedsubstitution	1
chromatin	1
orthologous	1
fdr	1
genedesert	1
pattern	1
eukaryotes	1
chimpanzee	1
mouse	1
imprinting	1
project_isoform	1
mitochondrial	1
microsatellite	1
olfactory	1
proteinlength	1
modeltest	1
metabolism	1
ecoli	1
adh	1
snow	1
fitness	1
array	1
pleiotropy	1
simulation	1
mktest	1
levelofselection	1
mcdonald_kreitman	1
chapter	1
5c	1
nullmutation	1
virus	1
apis	1
non-synonimous	1
amplification	1
colcalisation	1
reactome	1

Garamonfok's promotors [33 articles] Export Sort

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