HawkinsJohnC's library 23 articles Export

	Searching for three-dimensional secondary structural patterns in proteins with ProSMoS [My Copy] Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1331-1338. by Shuoyong Shi, Yi Zhong, Indraneel Majumdar, S. Sri Krishna, Nick V. Grishin posted to no-tag by HawkinsJohnC on 2009-08-11 13:50:46 as
	ProSMoS server: a pattern-based search using interaction matrix representation of protein structures. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009) by Shuoyong Shi, Bhadrachalam Chitturi, Nick V. Grishin posted to no-tag by HawkinsJohnC on 2009-08-11 13:49:28 as
	The Smads. [My Copy] Genome Biol, Vol. 2, No. 8. (2001) by L. Attisano, S. Tuen Lee-Hoeflich posted to tfbs by HawkinsJohnC on 2009-07-08 12:39:56 as along with 1 person sennoma
	Transcriptional regulation of protein complexes within and across species. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 4. (23 January 2007), pp. 1283-1288. by K. Tan, T. Shlomi, H. Feizi, T. Ideker, R. Sharan posted to tfbs by HawkinsJohnC on 2009-07-08 09:29:39 as along with 6 people and 2 groups kaarsinogen icases nickluscombe zwang dylan77 carlk EBI-regulation TNT
	A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 8. (26 February 2008), pp. 2934-2939. by K. Tan, H. Feizi, C. Luo, S. H. Fan, T. Ravasi, T. G. Ideker posted to tfbs by HawkinsJohnC on 2009-07-08 09:28:33 as along with 3 people tmmurali djkt pmendes
	Integrated Assessment and Prediction of Transcription Factor Binding [My Copy] PLoS Comput Biol, Vol. 2, No. 6. (16 June 2006), e70. by Andreas Beyer, Christopher Workman, Jens Hollunder, et al.Dörte Radke, Ulrich Möller, Thomas Wilhelm, Trey Ideker posted to tfbs by HawkinsJohnC on 2009-07-08 09:27:38 as along with 10 people and 1 group vingron ajbattle nklee jfr balajis wnpx emilyhare samal reidy Ao_Li2007 EisenLab
	Dynamic reprogramming of transcription factors to and from the subtelomere. [My Copy] Genome research, Vol. 19, No. 6. (16 June 2009), pp. 1014-1025. by H. C. Mak, L. Pillus, T. Ideker posted to tfbs by HawkinsJohnC on 2009-07-08 09:22:50 as along with 5 people and 1 group megraw epigenetics idonaldson JustinCrocker maximilianh BenosLab
	Protein folds, functions and evolution [My Copy] Journal of Molecular Biology, Vol. 293, No. 2. (22 October 1999), pp. 333-342. by Janet M. Thornton, Christine A. Orengo, Annabel E. Todd, Frances M. G. Pearl posted to enzymes evolution folds function protein structure by HawkinsJohnC on 2009-07-08 09:18:25 as
	PRINTS and its automatic supplement, prePRINTS [My Copy] Nucl. Acids Res., Vol. 31, No. 1. (1 January 2003), pp. 400-402. by T. K. Attwood, P. Bradley, D. R. Flower, et al.A. Gaulton, N. Maudling, A. L. Mitchell, G. Moulton, A. Nordle, K. Paine, P. Taylor, A. Uddin, C. Zygouri posted to no-tag by HawkinsJohnC on 2009-07-07 12:46:44 as along with 2 people Cortel siebertm
	Motif3D: relating protein sequence motifs to 3D structure [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3333-3336. by Anna Gaulton, Teresa K. Attwood posted to no-tag by HawkinsJohnC on 2009-07-07 12:42:52 as along with 1 person phoenixzxl
	An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 3. (2009), pp. 718-730. by Beisi Xu, Yuedong Yang, Haojun Liang, Yaoqi Zhou posted to no-tag by HawkinsJohnC on 2009-07-06 10:06:13 as
	Clustering protein environments for function prediction: finding PROSITE motifs in 3D [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 4. (2007), S10. by Sungroh Yoon, Jessica Ebert, Eui Y. Chung, Giovanni De Micheli, Russ Altman posted to no-tag by HawkinsJohnC on 2009-06-26 09:02:16 as along with 3 people and 1 group iaolier shadowman Einat structural_bioinformatics
	A computational system for modelling flexible protein-protein and protein-DNA docking. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 6 (1998), pp. 183-192. by M. J. Sternberg, P. Aloy, H. A. Gabb, et al.R. M. Jackson, G. Moont, E. Querol, F. X. Aviles posted to dna-binding docking interaction prediction protein-dna protein-protein structure by HawkinsJohnC on 2009-06-24 15:19:22 as
	A protein-DNA docking benchmark [My Copy] Nucl. Acids Res., Vol. 36, No. 14. (1 August 2008), e88. by Marc van Dijk, Alexandre M. Bonvin posted to dataset dna-binding protein-dna by HawkinsJohnC on 2009-06-24 14:54:07 as along with 4 people oteri reyez neils boris_aguilar
	Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility [My Copy] Nucl. Acids Res., Vol. 34, No. 11. (4 July 2006), pp. 3317-3325. by Marc van Dijk, Aalt D. van Dijk, Victor Hsu, Rolf Boelens, Alexandre M. Bonvin posted to dna-binding docking prediction protein by HawkinsJohnC on 2009-06-24 14:53:33 as along with 1 person oteri
	MSDmotif: exploring protein sites and motifs [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 312. by Adel Golovin, Kim Henrick posted to motif protein structure by HawkinsJohnC on 2009-06-24 10:49:56 as along with 6 people pansapiens tjimenez reyez massivemayhem chad_davis Evangelia
	Features of a Smad3 MH1-DNA complex. Roles of water and zinc in DNA binding. [My Copy] The Journal of biological chemistry, Vol. 278, No. 22. (30 May 2003), pp. 20327-20331. by J. Chai, J. W. Wu, N. Yan, J. Massagué, N. P. Pavletich, Y. Shi posted to dna-binding protein-domain by HawkinsJohnC on 2009-06-19 13:40:04 as
	PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs [My Copy] BMC Bioinformatics, Vol. 7 (27 July 2006), 365. by Sylvain Pitre, Frank Dehne, Albert Chan, et al.Jim Cheetham, Alex Duong, Andrew Emili, Marinella Gebbia, Jack Greenblatt, Mathew Jessulat, Nevan Krogan, Xuemei Luo, Ashkan Golshani posted to interaction prediction protein-protein by HawkinsJohnC on 2009-06-16 15:01:05 as along with 1 person gurkanbebek
	SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces. [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2 March 2006) by Joan Teyra, Andreas Doms, Michael Schroeder, M Teresa T. Pisabarro posted to interface protein by HawkinsJohnC on 2009-06-16 14:52:00 as along with 10 people and 2 groups krapnik timg flbarroso higueruelo jwm bicko chad_davis choonpeng jteyra Lombardo_7 Radiation_Damage Stressosome
	Recent Progress and Future Directions in Protein-Protein Docking [My Copy] Current Protein and Peptide Science, Vol. 9, No. 1. (February 2008), pp. 1-15. by Ritchie, W. David posted to docking interaction protein-protein by HawkinsJohnC on 2009-06-16 14:49:19 as along with 3 people and 1 group oteri TobiasAbenius timg Structural Biology Group TorVergata
	Identification of Protein-Protein Interaction Sites from Docking Energy Landscapes [My Copy] Journal of Molecular Biology, Vol. 335, No. 3. (16 January 2004), pp. 843-865. by Juan Fernandez-Recio, Maxim Totrov, Ruben Abagyan posted to binding interaction protein-protein sites by HawkinsJohnC on 2009-06-16 14:45:43 as along with 2 people bicko cjeans
	Conserved noncoding elements and the evolution of animal body plans. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology (2 June 2009) by Tanya Vavouri, Ben Lehner posted to development evolution regulation rna by HawkinsJohnC on 2009-06-16 13:23:48 as along with 1 person and 2 groups cisevol cis-regulatory-evolution BergmanLab
	Prediction of protein interaction sites from sequence profile and residue neighbor list [My Copy] Proteins: Structure, Function, and Genetics, Vol. 44, No. 3. (2001), pp. 336-343. by Huan-Xiang Zhou, Yibing Shan posted to binding interaction prediction protein protein-protein site by HawkinsJohnC on 2009-06-16 13:09:03 as

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tfbs	5
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prediction	4
structure	3
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evolution	2
binding	2
protein-dna	2
protein-domain	1
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interface	1
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function	1
folds	1
development	1

HawkinsJohnC's library 23 articles Export

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