JeffR100's library 157 articles Export

	An insulator element and condensed chromatin region separate the chicken beta-globin locus from an independently regulated erythroid-specific folate receptor gene. [My Copy] EMBO J, Vol. 18, No. 14. (15 July 1999), pp. 4035-4048. by M. N. Prioleau, P. Nony, M. Simpson, G. Felsenfeld posted to no-tag by JeffR100 on 2007-01-02 14:18:41 as
	Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles [My Copy] Genome Res., Vol. 15, No. 5. (1 May 2005), pp. 674-680. by Yoav Gilad, Scott A. Rifkin, Paul Bertone, Mark Gerstein, Kevin P. White posted to no-tag by JeffR100 on 2006-12-29 01:46:42 as along with 1 person jphekman
	Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication [My Copy] Nature, Vol. 437, No. 7055., pp. 94-100. by Elena V. Linardopoulou, Eleanor M. Williams, Yuxin Fan, Cynthia Friedman, Janet M. Young, Barbara J. Trask posted to no-tag by JeffR100 on 2006-12-29 01:42:21 as along with 2 people and 1 group nickluscombe djkt EBI-regulation
	A genome-wide comparison of recent chimpanzee and human segmental duplications [My Copy] Nature, Vol. 437, No. 7055., pp. 88-93. by Ze Cheng, Mario Ventura, Xinwei She, et al.Philipp Khaitovich, Tina Graves, Kazutoyo Osoegawa, Deanna Church, Pieter Dejong, Richard K. Wilson, Svante Pääbo, Mariano Rocchi, Evan E. Eichler posted to no-tag by JeffR100 on 2006-12-29 01:41:44 as along with 4 people and 1 group dakelley great_apes treangen mcox biodiversity_conservation
	Initial sequence of the chimpanzee genome and comparison with the human genome. [My Copy] Nature, Vol. 437, No. 7055. (1 September 2005), pp. 69-87. by Chimpanzee Sequencing and Analysis Consortium posted to no-tag by JeffR100 on 2006-12-29 01:39:57 as along with 12 people and 3 groups rshe ThomasDOtto cannin chrn aprasad great_apes indigoviolet dullhunk djkt Garamonfok iris42 rvosa biodiversity_conservation EisenLab FAB-lab
	Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5742. (16 September 2005), pp. 1850-1854. by Philipp Khaitovich, Ines Hellmann, Wolfgang Enard, et al.Katja Nowick, Marcus Leinweber, Henriette Franz, Gunter Weiss, Michael Lachmann, Svante Pääbo posted to no-tag by JeffR100 on 2006-12-29 01:38:39 as along with 11 people and 2 groups daveGerrard mox provero xwbcn balicea madhadron nickluscombe hdopazo djkt mikaelhuss usagi-kirin EBI-regulation BioinfoCIPF
	Expression profiling in primates reveals a rapid evolution of human transcription factors. [My Copy] Nature, Vol. 440, No. 7081. (9 March 2006), pp. 242-245. by Yoav Gilad, Alicia Oshlack, Gordon K. Smyth, Terence P. Speed, Kevin P. White posted to no-tag by JeffR100 on 2006-12-29 01:35:43 as along with 17 people and 4 groups gderwin athma stevanspringer ccots eckart_bindewald dchughes tabu nirfriedman nickluscombe ranb johncumbers djkt nicg mikaelhuss candypmcg emarker emptyhb FAB-lab G4ID EBI-regulation Genetics-of-Gambling
	The suppressor of Hairy-wing binding region is required for gypsy mutagenesis [My Copy] Molecular and General Genetics MGG, Vol. V233, No. 1. (1 May 1992), pp. 65-70. by Patricia A. Smith, Victor G. Corces posted to no-tag by JeffR100 on 2006-12-27 17:03:21 as
	An insulator blocks spreading of histone acetylation and interferes with RNA polymerase II transfer between an enhancer and gene [My Copy] Nucl. Acids Res., Vol. 32, No. 16. (15 September 2004), pp. 4903-4919. by Hui Zhao, Ann Dean posted to no-tag by JeffR100 on 2006-12-27 14:58:54 as along with 1 person and 1 group sebastien_vigneau CTCF
	CTCF Mediates Interchromosomal Colocalization Between Igf2/H19 and Wsb1/Nf1 [My Copy] Science, Vol. 312, No. 5771. (14 April 2006), pp. 269-272. by Jian Q. Ling, Tao Li, Ji F. Hu, et al.Thanh H. Vu, Hui L. Chen, Xin W. Qiu, Athena M. Cherry, Andrew R. Hoffman posted to no-tag by JeffR100 on 2006-12-27 14:56:33 as along with 1 person and 1 group nickluscombe EBI-regulation
	Interchromosomal associations between alternatively expressed loci [My Copy] Nature, Vol. 435, No. 7042. (08 May 2005), pp. 637-645. by Charalampos G. Spilianakis, Maria D. Lalioti, Terrence Town, Gap R. Lee, Richard A. Flavell posted to no-tag by JeffR100 on 2006-12-27 14:54:10 as along with 4 people Annab Eroslavochka lingchong maximilianh
	Numbers and Organization of RNA Polymerases, Nascent Transcripts, and Transcription Units in HeLa Nuclei [My Copy] Mol. Biol. Cell, Vol. 9, No. 6. (1 June 1998), pp. 1523-1536. by Dean A. Jackson, Francisco J. Iborra, Erik M. M. Manders, Peter R. Cook posted to no-tag by JeffR100 on 2006-12-27 14:52:37 as
	Active genes dynamically colocalize to shared sites of ongoing transcription [My Copy] Nat Genet, Vol. 36, No. 10. (October 2004), pp. 1065-1071. by Cameron S. Osborne, Lyubomira Chakalova, Karen E. Brown, et al.David Carter, Alice Horton, Emmanuel Debrand, Beatriz Goyenechea, Jennifer A. Mitchell, Susana Lopes, Wolf Reik, Peter Fraser posted to no-tag by JeffR100 on 2006-12-27 14:51:18 as
	Multiple interactions between regulatory regions are required to stabilize an active chromatin hub. [My Copy] Genes Dev, Vol. 18, No. 12. (15 June 2004), pp. 1495-1509. by G. P. Patrinos, M. de Krom, E. de Boer, et al.A. Langeveld, A. M. Imam, J. Strouboulis, W. de Laat, F. G. Grosveld posted to no-tag by JeffR100 on 2006-12-27 14:50:18 as along with 1 person forluvoft
	DNA supercoiling allows enhancer action over a large distance [My Copy] PNAS, Vol. 98, No. 26. (18 December 2001), pp. 14883-14888. by Ye Liu, Vladimir Bondarenko, Alexander Ninfa, Vasily M. Studitsky posted to no-tag by JeffR100 on 2006-12-27 14:38:19 as along with 1 person and 1 group wrowell Cline_lab
	Transcription of the human [beta]-globin gene is stimulated by an SV40 enhancer to which it is physically linked but topologically uncoupled [My Copy] Cell, Vol. 45, No. 4. (23 May 1986), pp. 575-580. by Sharon E. Plon, James C. Wang posted to no-tag by JeffR100 on 2006-12-27 14:23:14 as
	Conserved CTCF Insulator Elements Flank the Mouse and Human beta-Globin Loci [My Copy] Mol. Cell. Biol., Vol. 22, No. 11. (1 June 2002), pp. 3820-3831. by Catherine M. Farrell, Adam G. West, Gary Felsenfeld posted to no-tag by JeffR100 on 2006-12-27 14:21:07 as
	Putting Boundaries on Silence [My Copy] Cell, Vol. 99, No. 5. (24 November 1999), pp. 459-462. by Fang-Lin Sun, Sarah C. Elgin posted to no-tag by JeffR100 on 2006-12-27 14:19:58 as
	A position-effect assay for boundaries of higher order chromosomal domains [My Copy] Cell, Vol. 64, No. 5. (8 March 1991), pp. 941-950. by Rebecca Kellum, Paul Schedl posted to no-tag by JeffR100 on 2006-12-27 14:16:06 as
	Clustering of housekeeping genes provides a unified model of gene order in the human genome. [My Copy] Nat Genet, Vol. 31, No. 2. (June 2002), pp. 180-183. by M. J. Lercher, A. O. Urrutia, L. D. Hurst posted to no-tag by JeffR100 on 2006-12-20 15:44:37 as along with 6 people and 1 group inesdesantiago oamg gpalidwor nagendraproj jpoyatos gjuggler Glimcher_Lab
	Synexpression groups in eukaryotes [My Copy] Nature, Vol. 402, No. 6761. (2 December 1999), pp. 483-487. by Christof Niehrs, Nicolas Pollet posted to no-tag by JeffR100 on 2006-12-20 14:39:48 as along with 1 person kentz
	A Roadmap of Tandemly Arrayed Genes in the Genomes of Human, Mouse, and Rat [My Copy] Molecular Biology and Evolution, Vol. 23, No. 11. (November 2006), pp. 2134-2141. by Shoja, Valia, Zhang, Liqing posted to no-tag by JeffR100 on 2006-12-20 14:19:32 as along with 2 people strands dandaman
	Coexpression of Neighboring Genes in the Genome of Arabidopsis thaliana [My Copy] Genome Res., Vol. 14, No. 6. (1 June 2004), pp. 1060-1067. by Elizabeth J. Williams, Dianna J. Bowles posted to no-tag by JeffR100 on 2006-12-20 14:11:51 as along with 2 people kengg olympos
	Genomic Gene Clustering Analysis of Pathways in Eukaryotes [My Copy] Genome Res., Vol. 13, No. 5. (1 May 2003), pp. 875-882. by Jennifer M. Lee, Erik L. Sonnhammer posted to no-tag by JeffR100 on 2006-12-20 14:04:56 as along with 6 people and 1 group thegoose2 tharris jpoyatos maximilianh alhufton Garamonfok C. elegans / WormBase
	The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. [My Copy] Genome Res, Vol. 13, No. 9. (September 2003), pp. 1998-2004. by R. Versteeg, B. D. van Schaik, M. F. van Batenburg, et al.M. Roos, R. Monajemi, H. Caron, H. J. Bussemaker, A. H. van Kampen posted to no-tag by JeffR100 on 2006-12-20 01:59:38 as along with 4 people oatelet jpoyatos oelemento inesdesantiago
	Evidence for large domains of similarly expressed genes in the Drosophila genome [My Copy] Journal of Biology, Vol. 1 (2002) by Paul Spellman, Gerald Rubin posted to bibtex-import by JeffR100 on 2006-12-15 17:10:09 as
	Evolutionary constraints in conserved nongenic sequences of mammals [My Copy] Genome Research, Vol. 15 (Oct 2005), pp. 1373-1378. by Peter D. Keightley, Gregory V. Kryukov, Shamil Sunyaev, Daniel L. Halligan, Daniel J. Gaffney posted to bibtex-import by JeffR100 on 2006-12-15 17:10:08 as
	Evolution and functional classification of vertebrate gene deserts [My Copy] Genome Research (Dec 2004) by Ivan Ovcharenko, Gabriela G. Loots, Marcelo A. Nobrega, Ross C. Hardison, Webb Miller, Lisa Stubbs posted to bibtex-import by JeffR100 on 2006-12-15 17:10:08 as
	A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts [My Copy] Genome Research, Vol. 15 (Aug 2005), pp. 1061-1072. by Elisa, Carmen G. Feijoo, Miguel Manzanares, et al.Juan J. Tena, Elisa R. Seguel, Annalisa Letizia, Miguel L. Allende, Jose posted to bibtex-import by JeffR100 on 2006-12-15 17:10:08 as
	Gene regulation and large-scale chromatin organization in the nucleus [My Copy] Chromosome Research, Vol. V14 (Feb 2006), pp. 117-126. by Niall Dillon posted to bibtex-import by JeffR100 on 2006-12-15 17:08:38 as
	Gene Expression Evolves Faster in Narrowly Than in Broadly Expressed Mammalian Genes [My Copy] Molecular Biology and Evolution, Vol. 22 (Oct 2005), pp. 2113-2118. by Jing Yang, Andrew I. Su, Wen H. Li posted to bibtex-import by JeffR100 on 2006-12-15 17:08:38 as
	Folding and organization of a contiguous chromosome region according to the gene distribution pattern in primary genomic sequence [My Copy] The Journal of Cell Biology, Vol. 174 (Jul 2006), pp. 27-38. by Lindsay S. Shopland, Christopher R. Lynch, Kevin A. Peterson, et al.Kathleen Thornton, Nick Kepper, Johann von Hase, Stefan Stein, Sarah Vincent, Kelly R. Molloy, Gregor Kreth, Christoph Cremer, Carol J. Bult, Timothy P. O'Brien posted to bibtex-import by JeffR100 on 2006-12-15 17:08:38 as
	Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale [My Copy] Science, Vol. 278 (Oct 1997), pp. 680-686. by Joseph L. Derisi, Vishwanath R. Iyer, Patrick O. Brown posted to bibtex-import by JeffR100 on 2006-12-15 17:08:38 as
	Evolutionary Origin and Maintenance of Coexpressed Gene Clusters in Mammals [My Copy] Mol Biol Evol, Vol. 23, No. 9. (1 September 2006), pp. 1715-1723. by Marie Semon, Laurent Duret posted to no-tag by JeffR100 on 2006-12-15 17:07:56 as along with 3 people and 2 groups dchughes Garamonfok inesdesantiago G4ID Genetics-of-Gambling
	Insulators: many functions, many mechanisms [My Copy] Genes Dev., Vol. 16, No. 3. (1 February 2002), pp. 271-288. by Adam G. West, Miklos Gaszner, Gary Felsenfeld posted to no-tag by JeffR100 on 2006-12-15 17:02:01 as along with 4 people and 1 group sebastien_vigneau olympos wrowell eviledv Cline_lab
	Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites [My Copy] Genome Research, Vol. 16 (Oct 2006), pp. 1310-1319. by George A. Follows, Pawan Dhami, Berthold Gottgens, et al.Alexander W. Bruce, Peter J. Campbell, Shane C. Dillon, Aileen M. Smith, Christoph Koch, Ian J. Donaldson, Mike A. Scott, Ian Dunham, Mary E. Janes, David Vetrie, Anthony R. Green posted to bibtex-import by JeffR100 on 2006-12-15 17:02:00 as
	Insulators of higher eukaryotes: Properties, mechanisms of action, and role in transcriptional regulation [My Copy] Russian Journal of Genetics, Vol. V42 (Aug 2006), pp. 845-857. by O. G. Maksimenko, D. A. Chetverina, P. G. Georgiev posted to bibtex-import by JeffR100 on 2006-12-15 17:02:00 as
	Identification of functional transcription factor binding sites using closely related Saccharomyces species [My Copy] Genome Research, Vol. 15 (May 2005), pp. 701-709. by Scott W. Doniger, Juyoung Huh, Justin C. Fay posted to bibtex-import by JeffR100 on 2006-12-15 17:02:00 as
	Comparative genomics of Drosophila and human core promoters [My Copy] Genome Biology, Vol. 7 (2006) by Peter Fitzgerald, David Sturgill, Andrey Shyakhtenko, Brian Oliver, Charles Vinson posted to bibtex-import by JeffR100 on 2006-12-15 17:02:00 as
	GOstat: find statistically overrepresented Gene Ontologies within a group of genes [My Copy] Bioinformatics, Vol. 20 (Jun 2004), pp. 1464-1465. by Tim Beissbarth, Terence P. Speed posted to bibtex-import by JeffR100 on 2006-12-15 17:00:07 as
	Going the Distance: A Current View of Enhancer Action [My Copy] Science, Vol. 281 (Jul 1998), pp. 60-63. by Elizabeth M. Blackwood, James T. Kadonaga posted to bibtex-import by JeffR100 on 2006-12-15 17:00:07 as
	Genomic organization of gypsy-like chromatin insulators in Drosophila melanogaster [My Copy] Genetics (Feb 2006) by Edward Ramos, Dolanchanpa Ghosh, Ellen Baxter, Victor Corces posted to bibtex-import by JeffR100 on 2006-12-15 17:00:07 as
	Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS) [My Copy] Genome Research, Vol. 16 (Jan 2006), pp. 123-131. by Gregory E. Crawford, Ingeborg E. Holt, James Whittle, et al.Bryn D. Webb, Denise Tai, Sean Davis, Elliott H. Margulies, Yidong Chen, John A. Bernat, David Ginsburg, Daixing Zhou, Shujun Luo, Thomas J. Vasicek, Mark J. Daly, Tyra G. Wolfsberg, Francis S. Collins posted to bibtex-import by JeffR100 on 2006-12-15 17:00:07 as
	A gene atlas of the mouse and human protein-encoding transcriptomes [My Copy] Proceedings of the National Academy of Sciences, Vol. 101 (Apr 2004), pp. 6062-6067. by Andrew I. Su, Tim Wiltshire, Serge Batalov, et al.Hilmar Lapp, Keith A. Ching, David Block, Jie Zhang, Richard Soden, Mimi Hayakawa, Gabriel Kreiman, Michael P. Cooke, John R. Walker, John B. Hogenesch posted to bibtex-import by JeffR100 on 2006-12-15 17:00:07 as
	Active Chromatin Hub of the Mouse {alpha}-Globin Locus Forms in a Transcription Factory of Clustered Housekeeping Genes [My Copy] Molecular and Cellular Biology, Vol. 26 (Jul 2006), pp. 5096-5105. by Guo L. Zhou, Li Xin, Wei Song, et al.Li J. Di, Guang Liu, Xue S. Wu, De P. Liu, Chih C. Liang posted to bibtex-import by JeffR100 on 2006-12-15 16:57:11 as
	ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements [My Copy] Genome Research (Oct 2006) by James Taylor, Svitlana Tyekucheva, David C. King, Ross C. Hardison, Webb Miller, Francesca Chiaromonte posted to bibtex-import by JeffR100 on 2006-12-15 16:57:11 as
	Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs [My Copy] Genes and Development, Vol. 15 (Oct 2001), pp. 2515-2519. by Jennifer E. F. Butler, James T. Kadonaga posted to bibtex-import by JeffR100 on 2006-12-15 16:57:10 as
	Enhancer Blocking by Chicken beta-Globin 5'-HS4: ROLE OF ENHANCER STRENGTH AND INSULATOR NUCLEOSOME DEPLETION [My Copy] Journal of Biological Chemistry, Vol. 281 (Oct 2006), pp. 30573-30580. by Hui Zhao, Aeri Kim, Sang H. Song, Ann Dean posted to bibtex-import by JeffR100 on 2006-12-15 16:57:10 as
	Distant conserved sequences flanking endothelial-specific promoters contain tissue-specific DNase-hypersensitive sites and over-represented motifs [My Copy] Human Molecular Genetics, Vol. 15 (Jul 2006), pp. 2098-2105. by John A. Bernat, Gregory E. Crawford, Aleksey Y. Ogurtsov, Francis S. Collins, David Ginsburg, Alexey S. Kondrashov posted to bibtex-import by JeffR100 on 2006-12-15 16:57:10 as
	Disruption of a long-range cis-acting regulator for Shh causes preaxial polydactyly [My Copy] Proceedings of the National Academy of Sciences, Vol. 99 (May 2002), pp. 7548-7553. by Laura A. Lettice, Taizo Horikoshi, Simon J. H. Heaney, et al.Marijke J. van Baren, Herma C. van der Linde, Guido J. Breedveld, Marijke Joosse, Nurten Akarsu, Ben A. Oostra, Naoto Endo, Minoru Shibata, Mikio Suzuki, Eiichi Takahashi, Toshikatsu Shinka, Yutaka Nakahori, Dai Ayusawa, Kazuhiko Nakabayashi, Stephen W. Scherer, Peter Heutink, Robert E. Hill, Sumihare Noji posted to bibtex-import by JeffR100 on 2006-12-15 16:57:10 as