JeremyZucker's library 351 articles Export

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	Genome-Wide Mapping of in Vivo Protein-DNA Interactions [My Copy] Science, Vol. 316, No. 5830. (8 June 2007), pp. 1497-1502. by David S. Johnson, Ali Mortazavi, Richard M. Myers, Barbara Wold posted to chipseq by JeremyZucker on 2007-12-04 18:11:33 as along with 24 people and 5 groups oannes daforerog tonamswish ewilban1 aprasad jo_davies aalibes balicea andersbj aswin kengg giovanni cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci blobbybirdman caseybrown emptyhb dquest Bioinformatics microRNA Marcotte_Lab UH - Computational Biology Myxo group
	CO: A chemical ontology for identification of functional groups and semantic comparison of small molecules. [My Copy] FEBS letters, Vol. 579, No. 21. (29 August 2005), pp. 4685-4691. by Howard J. Feldman, Michel Dumontier, Susan Ling, Norbert Haider, Christopher W. Hogue posted to biopax metabolic-reconstruction semantic-web by JeremyZucker on 2007-10-30 19:31:58 as along with 4 people and 1 group xavierprat pauldobson nicklynch kuhn MetabolicModeling
	In Silico Atomic Tracing by Substrate-Product Relationships in Escherichia coli Intermediary Metabolism [My Copy] Genome Research, Vol. 13, No. 11., 2455. by -- Arita posted to arita ecoli fba by JeremyZucker on 2007-03-24 05:07:19 as along with 1 group MetabolicModeling
	Metabolic modeling of a mutualistic microbial community [My Copy] Molecular Systems Biology, Vol. 3 (13 March 2007) by Sergey Stolyar, Steve Van Dien, Kristina L. Hillesland, et al.Nicolas Pinel, Thomas J. Lie, John A. Leigh, David A. Stahl posted to fba by JeremyZucker on 2007-03-24 04:58:25 as along with 5 people and 2 groups marcio aswin kevinemamy cjeans athleem MetabolicModeling clab
	Dynamic modeling of the central carbon metabolism of <I>Escherichia coli</I> [My Copy] Biotechnology and Bioengineering, Vol. 79, No. 1. (2002), pp. 53-73. by Christophe Chassagnole, Naruemol Noisommit-Rizzi, Joachim W. Schmid, Klaus Mauch, Matthias Reuss posted to no-tag by JeremyZucker on 2007-03-07 00:13:39 as along with 1 person and 1 group abrandes MetabolicModeling
	Variant tricarboxylic acid cycle in Mycobacterium tuberculosis: Identification of alpha-ketoglutarate decarboxylase -- Tian et al. 102 (30): 10670 -- Proceedings of the National Academy of Sciences [My Copy] by J. Tian, R. Bryk, M. Itoh, M. Suematsu, C. Nathan posted to ecoli enzyme fba kinetics tb tca vmax by JeremyZucker on 2007-03-06 23:14:45 as along with 1 group MetabolicModeling
	In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data - Nature Biotechnology [My Copy] posted to experiments fba by JeremyZucker on 2006-10-14 10:26:04 as along with 1 group MetabolicModeling
	Functional genomic hypothesis generation and experimentation by a robot scientist [My Copy] Nature, Vol. 427, No. 6971. (15 January 2004), pp. 247-252. by Ross D. King, Kenneth E. Whelan, Ffion M. Jones, et al.Philip G. K. Reiser, Christopher H. Bryant, Stephen H. Muggleton, Douglas B. Kell, Stephen G. Oliver posted to agi ai by JeremyZucker on 2007-08-11 01:19:38 as along with 12 people and 5 groups jdu abhishek_tiwari coela zhenyisx srp33 dbk tmmurali yas jtbates tabu samal dullhunk streptomyces dbk-lab T_lab triplehelix MetabolicModeling
	Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation. [My Copy] BMC Microbiol, Vol. 5, No. 1. (2005) by S. A. Becker, B. Ø. Palsson posted to fba palsson by JeremyZucker on 2006-09-20 02:33:39 as along with 1 group MetabolicModeling
	The effects of alternate optimal solutions in constraint-based genome-scale metabolic models [My Copy] Metabolic Engineering, Vol. 5, No. 4. (October 2003), pp. 264-276. by R. Mahadevan, C. H. Schilling posted to fba by JeremyZucker on 2006-09-18 16:15:02 as along with 1 person and 1 group lylu MetabolicModeling
	Adaptive evolution of bacterial metabolic networks by horizontal gene transfer - Nature Genetics [My Copy] posted to csaba evolution fba gtl pal by JeremyZucker on 2006-05-09 07:04:59 as along with 1 group MetabolicModeling
	Graph theoretic methods for the analysis of structural relationships in biological macromolecules [My Copy] Journal of the American Society for Information Science and Technology, Vol. 56, No. 5. (19 January 2005), pp. 518-528. by Peter J. Artymiuk, Ruth V. Spriggs, Peter Willett posted to bib by JeremyZucker on 2006-03-17 19:20:08 as along with 1 person and 3 groups ana structural_bioinformatics Bioinformatics MetabolicModeling
	Iron acquisition and metabolism by mycobacteria. [My Copy] Journal of bacteriology, Vol. 181, No. 15. (August 1999), pp. 4443-4451. by J. J. De Voss, K. Rutter, B. G. Schroeder, C. E. Barry posted to tb mycobacteria metabolism iron_acquisition by JeremyZucker on 2009-11-11 22:09:12 as
	Human macrophage activation programs induced by bacterial pathogens. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 3. (5 February 2002), pp. 1503-1508. by Gerard J. Nau, Joan F. Richmond, Ann Schlesinger, Ezra G. Jennings, Eric S. Lander, Richard A. Young posted to macrophage_activation human_macrophages heat_shock_proteins by JeremyZucker on 2009-11-10 23:01:36 as
	An integrated model of eicosanoid metabolism and signaling based on lipidomics flux analysis. [My Copy] Biophysical journal, Vol. 96, No. 11. (3 June 2009), pp. 4542-4551. by Shakti Gupta, Mano Ram R. Maurya, Daren L. Stephens, Edward A. Dennis, Shankar Subramaniam posted to macrophage lipidomics kinetic_model kegg kdo-lipid-a flux-measurements eicosanoid by JeremyZucker on 2009-11-10 21:37:06 as
	The transcription unit architecture of the Escherichia coli genome [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1043-1049. by Byung-Kwan Cho, Karsten Zengler, Yu Qiu, et al.Young S. Park, Eric M. Knight, Christian L. Barrett, Yuan Gao, Bernhard O. Palsson posted to transcriptional-regulatory-networks ecoli by JeremyZucker on 2009-11-09 22:26:39 as along with 5 people karthikraman venancio dbikard jjray rsaito
	Adaptable data management for systems biology investigations. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 79. by John Boyle, Hector Rovira, Chris Cavnor, David Burdick, Sarah Killcoyne, Ilya Shmulevich posted to web systems-biology semantic-web by JeremyZucker on 2009-11-09 22:10:42 as along with 10 people daforerog allysonlister guhjy lptolik renatomilani fgibson sjcockell erexhepa VGreiff druvus
	KEGG for linking genomes to life and the environment. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D480-484. by Minoru Kanehisa, Michihiro Araki, Susumu Goto, et al.Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi posted to kegg by JeremyZucker on 2009-11-02 20:38:45 as along with 30 people Thaverkamp sjcockell jperkins vkwn pablocarb VGreiff mqbphcw3 karinlag robert85 peterli jjray schwartzjmc ubcg08l allysonlister YukaH Cortel coela daforerog reyez namunet irenas guhjy raiyar barriot renatomilani shung hpaces massivemayhem natstreet TheresaNiederberger
	Proteome-wide profiling of isoniazid targets in Mycobacterium tuberculosis. [My Copy] Biochemistry, Vol. 45, No. 47. (28 November 2006), pp. 13947-13953. by Argyrides Argyrou, Lianji Jin, Linda Siconilfi-Baez, Ruth H. Angeletti, John S. Blanchard posted to tb protein-levels isoniazid by JeremyZucker on 2009-11-02 20:38:21 as along with 2 people and 1 group jholder madhadron MetabolicModeling
	Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions. [My Copy] Genome biology, Vol. 9, No. 9. (22 September 2008), R140. by Evan S. Snitkin, Aimée M. Dudley, Daniel M. Janse, Kaisheen Wong, George M. Church, Daniel Segrè posted to yeast phenotypes gene-ko fba biolog by JeremyZucker on 2009-10-29 23:22:05 as along with 2 people michaelbarton imina
	Genome-scale Reconstruction of Metabolic Network in Bacillus subtilis Based on High-throughput Phenotyping and Gene Essentiality Data. [My Copy] J Biol Chem, Vol. 282, No. 39. (28 September 2007), pp. 28791-28799. by Y. K. Oh, B. O. Palsson, S. M. Park, C. H. Schilling, R. Mahadevan posted to metabolic-reconstruction bsubtilis by JeremyZucker on 2009-10-24 00:16:04 as along with 8 people and 1 group coela schwartzjmc aschmeis jholder michaelbarton lflorez alexg hryk MetabolicModeling
	GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000308. by Vinay S. Kumar, Costas D. Maranas posted to optimization model_prediction model_modification metabolic_networks metabolic-reconstruction keio fba escherichia_coli ecoli carbon_sources bi-level by JeremyZucker on 2009-10-16 07:31:41 as along with 1 group MetabolicModeling
	Multiple high-throughput analyses monitor the response of E. coli to perturbations. [My Copy] Science (New York, N.Y.), Vol. 316, No. 5824. (27 April 2007), pp. 593-597. by Nobuyoshi Ishii, Kenji Nakahigashi, Tomoya Baba, et al.Martin Robert, Tomoyoshi Soga, Akio Kanai, Takashi Hirasawa, Miki Naba, Kenta Hirai, Aminul Hoque, Pei Yee Y. Ho, Yuji Kakazu, Kaori Sugawara, Saori Igarashi, Satoshi Harada, Takeshi Masuda, Naoyuki Sugiyama, Takashi Togashi, Miki Hasegawa, Yuki Takai, Katsuyuki Yugi, Kazuharu Arakawa, Nayuta Iwata, Yoshihiro Toya, Yoichi Nakayama, Takaaki Nishioka, Kazuyuki Shimizu, Hirotada Mori, Masaru Tomita posted to gene-expression flux-measurements ecoli by JeremyZucker on 2009-10-06 21:49:17 as along with 8 people and 1 group ynaito cgaugain thomaskelder jjray raiyar dylan77 ytoya IgorG steinmetzlab
	Regulation by transcription factors in bacteria: beyond description. [My Copy] FEMS microbiology reviews, Vol. 33, No. 1. (January 2009), pp. 133-151. by Enrique Balleza, Lucia N. López-Bojorquez, Agustino Martínez-Antonio, et al.Osbaldo Resendis-Antonio, Irma Lozada-Chávez, Yalbi I. Balderas-Martínez, Sergio Encarnación, Julio Collado-Vides posted to transcriptional-regulatory-networks gene_regulation gene-regulation by JeremyZucker on 2009-09-12 19:06:02 as along with 1 person druvus
	MtbRegList, a database dedicated to the analysis of transcriptional regulation in Mycobacterium tuberculosis. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 10. (15 May 2005), pp. 2563-2565. by Pierre-Etienne E. Jacques, Alain L. Gervais, Mathieu Cantin, et al.Jean-Francois F. Lucier, Guillaume Dallaire, Geneviève Drouin, Luc Gaudreau, Jean Goulet, Ryszard Brzezinski posted to tb gene-regulation by JeremyZucker on 2009-09-12 18:50:15 as
	Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth [My Copy] Nature, Vol. 420, No. 6912. (14 November 2002), pp. 186-189. by Rafael U. Ibarra, Jeremy S. Edwards, Bernhard O. Palsson posted to glycerol fba ecoli adaptive_evolution by JeremyZucker on 2009-09-11 19:46:23 as along with 2 people bjorns kdang
	targetTB: a target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis. [My Copy] BMC systems biology, Vol. 2, No. 1. (2008) by Karthik Raman, Kalidas Yeturu, Nagasuma Chandra posted to tb drug_discovery by JeremyZucker on 2009-09-10 01:19:02 as along with 4 people and 1 group schwartzjmc shung kshameer druvus MetabolicModeling
	Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production. [My Copy] PLoS computational biology, Vol. 5, No. 8. (28 August 2009), e1000489. by Caroline Colijn, Aaron Brandes, Jeremy Zucker, et al.Desmond S. Lun, Brian Weiner, Maha R. Farhat, Tan-Yun Y. Cheng, D. Branch Moody, Megan Murray, James E. Galagan posted to tb fba expresion-data eflux by JeremyZucker on 2009-08-29 01:11:44 as along with 1 person ptrobajo
	Evidence supporting predicted metabolic pathways for Vibrio cholerae: gene expression data and clinical tests [My Copy] Nucl. Acids Res., Vol. 34, No. 8. (8 May 2006), pp. 2438-2444. by Jing Shi, Pedro R. Romero, Gary K. Schoolnik, Alfred M. Spormann, Peter D. Karp posted to vibrio metabolic-reconstruction metabolic-models biocyc by JeremyZucker on 2009-08-28 22:04:02 as
	Annotation-based inference of transporter function [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i259-267. by Thomas J. Lee, Ian Paulsen, Peter Karp posted to transporters biocyc by JeremyZucker on 2009-08-28 22:02:11 as along with 1 person guhjy
	Pathway Databases: A Case Study in Computational Symbolic Theories [My Copy] Science, Vol. 293, No. 5537. (14 September 2001), pp. 2040-2044. by Peter D. Karp posted to biocyc by JeremyZucker on 2009-08-28 22:01:36 as along with 2 people dullhunk cjeans
	TB database: an integrated platform for tuberculosis research. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (January 2009) by T. B. Reddy, Robert Riley, Farrell Wymore, et al.Phillip Montgomery, Dave DeCaprio, Reinhard Engels, Marcel Gellesch, Jeremy Hubble, Dennis Jen, Heng Jin, Michael Koehrsen, Lisa Larson, Maria Mao, Michael Nitzberg, Peter Sisk, Christian Stolte, Brian Weiner, Jared White, Zachariah K. Zachariah, Gavin Sherlock, James E. Galagan, Catherine A. Ball, Gary K. Schoolnik posted to tb-fba tb by JeremyZucker on 2009-08-28 21:20:57 as
	Large-scale identification of genetic design strategies using local search [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Desmond S. Lun, Graham Rockwell, Nicholas J. Guido, et al.Michael Baym, Jonathan A. Kelner, Bonnie Berger, James E. Galagan, George M. Church posted to metabolic-reconstruction fba by JeremyZucker on 2009-08-28 21:20:29 as along with 3 people and 1 group TRHvidsten reyez jjray Synthetic Biology
	MetNetAligner: a web service tool for metabolic network alignments [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1989-1990. by Qiong Cheng, Robert Harrison, Alexander Zelikovsky posted to pathway-alignment by JeremyZucker on 2009-08-28 19:07:30 as along with 1 person guhjy
	Flux balance analysis of photoautotrophic metabolism. [My Copy] Biotechnology progress, Vol. 21, No. 6. (c 2005), pp. 1617-1626. by Avantika A. Shastri, John A. Morgan posted to synechocystis metabolic-reconstruction fba cyanobacteria by JeremyZucker on 2009-08-28 18:05:30 as
	Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 4. by Nanette Boyle, John Morgan posted to metabolic-reconstruction fba chlamy algae by JeremyZucker on 2009-08-28 17:51:09 as along with 3 people TRHvidsten behindtherabbit colinDotAIBN
	iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations [My Copy] Genome Biology, Vol. 10, No. 6. (2009), R69. by Christopher Henry, Jenifer Zinner, Matthew Cohoon, Rick Stevens posted to seed fba bsub by JeremyZucker on 2009-08-28 17:49:57 as along with 2 people abhishek_tiwari barriot
	Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae [My Copy] BMC Genomics, Vol. 9, No. 1. (23 May 2008), 245. by Wanwipa Vongsangnak, Peter Olsen, Kim Hansen, Steen Krogsgaard, Jens Nielsen posted to metabolic-reconstruction fba aspergillus by JeremyZucker on 2009-08-28 01:38:32 as along with 1 group MetabolicModeling
	Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. [My Copy] Applied and environmental microbiology, Vol. 60, No. 10. (1 October 1994), pp. 3724-3731. by A. Varma, B. O. Palsson posted to fba ecoli by JeremyZucker on 2009-08-27 21:40:08 as along with 2 people winterstream madhadron
	Missing genes in metabolic pathways: a comparative genomics approach. [My Copy] Current opinion in chemical biology, Vol. 7, No. 2. (April 2003), pp. 238-251. by Andrei Osterman, Ross Overbeek posted to orphan-enzymes orphan-enzyme by JeremyZucker on 2009-08-27 04:58:48 as along with 4 people vpenelle parnell shung min013
	Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1831-1832. by Aziz Mithani, Gail M. Preston, Jotun Hein posted to rahnuma metabolic-reconstruction fba by JeremyZucker on 2009-08-26 00:46:38 as along with 3 people dquest poirel renatomilani
	Genome-wide enzyme annotation with precision control: catalytic families (CatFam) databases. [My Copy] Proteins, Vol. 74, No. 2. (1 February 2009), pp. 449-460. by Chenggang Yu, Nela Zavaljevski, Valmik Desai, Jaques Reifman posted to enzyme-prediction ec by JeremyZucker on 2009-08-25 19:25:54 as along with 3 people idoerg reyez guhjy
	Fatty acid biosynthesis in Mycobacterium tuberculosis var. bovis Bacillus Calmette-Guérin. Purification and characterization of a novel fatty acid synthase, mycocerosic acid synthase, which elongates n-fatty acyl-CoA with methylmalonyl-CoA. [My Copy] The Journal of biological chemistry, Vol. 260, No. 1. (10 January 1985), pp. 616-623. by D. L. Rainwater, P. E. Kolattukudy posted to tb mycolic-acid fatty-acid by JeremyZucker on 2009-08-20 01:24:12 as
	Synthesis in vitro of very long chain fatty acids in Vibrio sp. strain ABE-1 [My Copy] Archives of Microbiology, Vol. 157, No. 3. (1 February 1992), pp. 223-228. by Naoki Morita, Nobuhiro Okajima, Masaru Gotoh, Hideyuki Hayashi, Hidetoshi Okuyama, Shoji Sasaki posted to vibrio lipid-biosynthesis fatty-acid by JeremyZucker on 2009-08-20 01:12:44 as
	The Mycobacterium tuberculosis pks2 gene encodes the synthase for the hepta- and octamethyl-branched fatty acids required for sulfolipid synthesis. [My Copy] The Journal of biological chemistry, Vol. 276, No. 20. (18 May 2001), pp. 16833-16839. by T. D. Sirakova, A. K. Thirumala, V. S. Dubey, H. Sprecher, P. E. Kolattukudy posted to tb pks12 lipid-biosynthesis by JeremyZucker on 2009-08-20 01:07:34 as
	Purification and biochemical characterization of the Mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein synthases KasA and KasB. [My Copy] The Journal of biological chemistry, Vol. 276, No. 50. (14 December 2001), pp. 47029-47037. by M. L. Schaeffer, G. Agnihotri, C. Volker, H. Kallender, P. J. Brennan, J. T. Lonsdale posted to tb mycolic-acid lipid-biosynthesis kasb kasa by JeremyZucker on 2009-08-20 00:50:08 as
	The role of KasA and KasB in the biosynthesis of meromycolic acids and isoniazid resistance in Mycobacterium tuberculosis. [My Copy] Tuberculosis (Edinburgh, Scotland), Vol. 82, No. 4-5. (2002), pp. 149-160. by R. A. Slayden, C. E. Barry posted to tb substrate-length mycolic-acid lipid-biosynthesis kasb kasa isoniazid by JeremyZucker on 2009-08-20 00:44:49 as
	Metabolic highways of Neurospora crassa revisited. [My Copy] Advances in genetics, Vol. 52 (2004), pp. 165-207. by Alan Radford posted to neurospora metabolic-reconstruction by JeremyZucker on 2009-08-12 20:39:28 as
	Genome-wide analysis of light-inducible responses reveals hierarchical light signalling in Neurospora. [My Copy] The EMBO journal, Vol. 28, No. 8. (22 April 2009), pp. 1029-1042. by Chen-Hui H. Chen, Carol S. Ringelberg, Robert H. Gross, Jay C. Dunlap, Jennifer J. Loros posted to gene-expression neurospora by JeremyZucker on 2009-06-25 21:42:46 as along with 2 people and 1 group schwartzjmc stajich Mycology
	Diversity of soil mycobacterium isolates from three sites that degrade polycyclic aromatic hydrocarbons [My Copy] Journal of Applied Microbiology, Vol. 102, No. 6. (June 2007), pp. 1612-1624. by Miller, C.D., Child, et al. R., Hughes, J.E., Benscai, M., Der, J.P., Sims, R.C., Anderson, A.J. posted to biolog pah tb by JeremyZucker on 2009-06-19 00:58:04 as

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fba	89
tb	58
metabolic-reconstruction	53
flux-measurements	37
mfa	28
metabolic-engineering	23
metabolite-concentrations	21
13c	19
photosynthesis	19
cyanobacteria	18
ecoli	18
metabolic-models	16
fatty-acid	14
solar-power	13
gc-ms	12
mycolic-acid	12
neurospora	12
biocyc	10
evolution	10
gene-regulation	10
metabolomics	10
palsson	10
biofuel	9
ec	9
yeast	9
orphan-enzyme	8
enzyme	7
tb-fba	7
bib	6
biohacker	6
biopax	6
lipid-biosynthesis	6
sauer	6
solar-energy	6
aspergillus	5
biodiesel	5
cancer	5
hypoxia	5
kegg	5
photomicrodiesel	5
robot-scientist	5
thermodynamics	5
bacteriophage	4
biolog	4
debugging-the-bug	4
eflux	4
evolutionary-dynamics	4
gene-expression	4
genomics	4
lipidomics	4
semantic-web	4
symbolic-programming	4
synechocystis	4
synthetic-biology	4
agi	3
chemostat	3
chipseq	3
chlorophyll	3
desa	3
drugs	3
ecocyc	3
eficaz	3
enzyme-prediction	3
evodynamics	3
experiments	3
expression-data	3
functional-genomics	3
gene-ko	3
hcv	3
ijr904	3
kinetics	3
mca	3
neuralgia	3
pdim	3
recombineering	3
regulatory-networks	3
synechococcus	3
systems-biology	3
ai	2
buchnera	2
cellulose	2
cheminformatics	2
chlamy	2
chronic-pain	2
corynebacterium	2
ethanol	2
functiona-annotation	2
gibbs-energy	2
isoniazid	2
kasa	2
kasb	2
keasling	2
ketamine	2
metabolome	2
mida	2
omics	2
operon	2
orphan-enzymes	2
owled	2
persistence	2
petri-net	2
pks12	2
protein-levels	2
sequence-function-prediction	2
streptomyces	2
symbiosis	2
tca	2
transcriptional-regulatory-networks	2
uncertainty	2
vibrio	2
web	2
accd4	1
adaptive_evolution	1
algae	1
ancestor	1
antibiotics	1
antimicrobial	1
arita	1
bi-level	1
biofuel-cell	1
biowarehouse	1
boshoff	1
bsub	1
bsubtilis	1
carbon_sources	1
cellulase	1
chipchip	1
cmc	1
common	1
constraint-based-modeling	1
co-response-analysis	1
cornish-bowden	1
csaba	1
drug_discovery	1
drug-resistance	1
dynamics	1
edwards	1
eicosanoid	1
ema	1
emu	1
endoglucanase	1
enzyme-pediction	1
escherichia_coli	1
experiment-ontology	1
expresion-data	1
expression-date	1
fabg	1
fadd32	1
flux-coupling	1
ft-ics-ms	1
functional-annotation	1
game-theory	1
gc-gc-ms	1
gc-tof-ms	1
gene_regulation	1
genetics	1
glycerol	1
go	1
graph-layout	1
group-contribution	1
gtl	1
heat_shock_proteins	1
human_macrophages	1
hypergraph	1
iron_acquisition	1
jews	1
jin	1
kdo-lipid-a	1
keio	1
kinetic_model	1
knowledge-representation	1
last	1
lysine	1
macrophage	1
macrophage_activation	1
maldi-tof-ms	1
metabo	1
metabolic-control-analysis	1
metabolic_networks	1
metabolism	1
michel-reydellet	1
minimal-genome	1
mmaa1	1
model_modification	1
model_prediction	1
moma	1
monte-carlo	1
mycobacteria	1
nmr	1
nonhousekeeping	1
objective-functions	1
obo	1
optimization	1
pah	1
pal	1
pathway-alignment	1
phenotypes	1
plasmo	1
pln	1
pneu	1
prochlorococcus	1
provenance	1
rahnuma	1
rip	1
seed	1
semantic	1
seq	1
stationarity	1
stephanopoulos	1
substrate-length	1
tami	1
task-complexity	1
tetrazolium	1
thiolactomycin	1
transcription-factors	1
transhydrogenase	1
transporters	1
unk1	1
unk2	1
vmax	1
whib	1

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