JeremyZucker's ecoli [18 articles] Export

Recent papers added to JeremyZucker's library classified by the tag ecoli. You can also see everyone's ecoli.

	The transcription unit architecture of the Escherichia coli genome [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1043-1049. by Byung-Kwan Cho, Karsten Zengler, Yu Qiu, et al.Young S. Park, Eric M. Knight, Christian L. Barrett, Yuan Gao, Bernhard O. Palsson posted to transcriptional-regulatory-networks ecoli by JeremyZucker on 2009-11-09 22:26:39 as along with 3 people dbikard jjray rsaito
	GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000308. by Vinay S. Kumar, Costas D. Maranas posted to optimization model_prediction model_modification metabolic_networks metabolic-reconstruction keio fba escherichia_coli ecoli carbon_sources bi-level by JeremyZucker on 2009-10-16 07:31:41 as along with 1 group MetabolicModeling
	Multiple high-throughput analyses monitor the response of E. coli to perturbations. [My Copy] Science (New York, N.Y.), Vol. 316, No. 5824. (27 April 2007), pp. 593-597. by Nobuyoshi Ishii, Kenji Nakahigashi, Tomoya Baba, et al.Martin Robert, Tomoyoshi Soga, Akio Kanai, Takashi Hirasawa, Miki Naba, Kenta Hirai, Aminul Hoque, Pei Yee Y. Ho, Yuji Kakazu, Kaori Sugawara, Saori Igarashi, Satoshi Harada, Takeshi Masuda, Naoyuki Sugiyama, Takashi Togashi, Miki Hasegawa, Yuki Takai, Katsuyuki Yugi, Kazuharu Arakawa, Nayuta Iwata, Yoshihiro Toya, Yoichi Nakayama, Takaaki Nishioka, Kazuyuki Shimizu, Hirotada Mori, Masaru Tomita posted to gene-expression flux-measurements ecoli by JeremyZucker on 2009-10-06 21:49:17 as along with 8 people and 1 group ynaito cgaugain thomaskelder jjray raiyar dylan77 ytoya IgorG steinmetzlab
	Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth [My Copy] Nature, Vol. 420, No. 6912. (14 November 2002), pp. 186-189. by Rafael U. Ibarra, Jeremy S. Edwards, Bernhard O. Palsson posted to glycerol fba ecoli adaptive_evolution by JeremyZucker on 2009-09-11 19:46:23 as along with 2 people bjorns kdang
	Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. [My Copy] Applied and environmental microbiology, Vol. 60, No. 10. (1 October 1994), pp. 3724-3731. by A. Varma, B. O. Palsson posted to fba ecoli by JeremyZucker on 2009-08-27 21:40:08 as along with 2 people winterstream madhadron
	Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. [My Copy] Genome research, Vol. 15, No. 10. (1 October 2005), pp. 1365-1372. by Stephen S. Fong, Andrew R. Joyce, Bernhard Ø. Palsson posted to ecoli evolutionary-dynamics expression-data metabolic-engineering by JeremyZucker on 2009-04-24 22:22:19 as along with 1 person discreteonyxorb
	In silico design and adaptive evolution of Escherichia coli for production of lactic acid. [My Copy] Biotechnol Bioeng, Vol. 91, No. 5. (5 September 2005), pp. 643-648. by S. S. Fong, A. P. Burgard, C. D. Herring, et al.E. M. Knight, F. R. Blattner, C. D. Maranas, B. O. Palsson posted to ecoli evolutionary-dynamics fba metabolic-engineering by JeremyZucker on 2009-04-24 22:20:03 as along with 1 person comb
	Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (3 December 2008) by Byung-Kwan K. Cho, Christian L L. Barrett, Eric M M. Knight, Young Seoub S. Park, Bernhard Ø O. Palsson posted to chipchip chipseq ecoli gene-regulation transcription-factors by JeremyZucker on 2009-03-05 19:33:07 as along with 2 people cerca gmunson
	Expression of the Escherichia coli pntAB genes encoding a membrane-bound transhydrogenase in Corynebacterium glutamicum improves l -lysine formation [My Copy] Applied Microbiology and Biotechnology, Vol. 75, No. 1. (1 May 2007), pp. 47-53. by Armin Kabus, Tobias Georgi, Volker Wendisch, Michael Bott posted to corynebacterium ecoli lysine metabolic-engineering transhydrogenase by JeremyZucker on 2009-01-30 02:04:48 as
	Alteration of the specificity and regulation of fatty acid synthesis of Escherichia coli by expression of a plant medium-chain acyl-acyl carrier protein thioesterase. [My Copy] Journal of bacteriology, Vol. 176, No. 23. (December 1994), pp. 7320-7327. by T. A. Voelker, H. M. Davies posted to ecoli fatty-acid synthetic-biology by JeremyZucker on 2009-01-27 18:34:11 as
	Microdiesel: Escherichia coli engineered for fuel production. [My Copy] Microbiology, Vol. 152, No. Pt 9. (September 2006), pp. 2529-2536. by Rainer Kalscheuer, Torsten Stölting, Alexander Steinbüchel posted to biodiesel biofuel ecoli by JeremyZucker on 2008-09-09 18:14:06 as along with 2 people BjornJohansson johncumbers
	Investigating metabolite essentiality through genome-scale analysis of Escherichia coli production capabilities. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 9. (1 May 2005), pp. 2008-2016. by M. Imieliński, C. Belta, A. Halász, H. Rubin posted to ecoli fba gene-ko ijr904 metabolite-concentrations by JeremyZucker on 2008-07-25 03:42:17 as along with 1 person hryk
	Metabolic flux analysis in Escherichia coli by integrating isotopic dynamic and isotopic stationary 13C labeling data. [My Copy] Biotechnology and bioengineering, Vol. 99, No. 5. (1 April 2008), pp. 1170-1185. by J. Schaub, K. Mauch, M. Reuss posted to 13c ecoli flux-measurements mfa by JeremyZucker on 2008-07-23 06:02:25 as
	Genome-scale thermodynamic analysis of Escherichia coli metabolism. [My Copy] Biophysical journal, Vol. 90, No. 4. (15 February 2006), pp. 1453-1461. by Christopher S. Henry, Matthew D. Jankowski, Linda J. Broadbelt, Vassily Hatzimanikatis posted to ecoli fba gibbs-energy thermodynamics by JeremyZucker on 2008-07-19 01:12:27 as along with 4 people winterstream schwartzjmc csanford lylu
	A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. [My Copy] Molecular systems biology, Vol. 3 (26 June 2007) by Adam M. Feist, Christopher S. Henry, Jennifer L. Reed, et al.Markus Krummenacker, Andrew R. Joyce, Peter D. Karp, Linda J. Broadbelt, Vassily Hatzimanikatis, Bernhard Ø. Palsson posted to biocyc ecocyc ecoli fba by JeremyZucker on 2008-07-17 18:51:37 as along with 7 people winterstream aheilbut schwartzjmc alexg cjeans hryk michaelbarton
	Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli [My Copy] J. Bacteriol., Vol. 188, No. 23. (1 December 2006), pp. 8259-8271. by Andrew R. Joyce, Jennifer L. Reed, Aprilfawn White, et al.Robert Edwards, Andrei Osterman, Tomoya Baba, Hirotada Mori, Scott A. Lesely, Bernhard O. Palsson, Sanjay Agarwalla posted to biohacker ecoli fba metabolic-models palsson by JeremyZucker on 2008-05-14 16:27:54 as along with 1 person lylu
	In Silico Atomic Tracing by Substrate-Product Relationships in Escherichia coli Intermediary Metabolism [My Copy] Genome Research, Vol. 13, No. 11., 2455. by -- Arita posted to arita ecoli fba by JeremyZucker on 2007-03-24 05:07:19 as along with 1 group MetabolicModeling
	Variant tricarboxylic acid cycle in Mycobacterium tuberculosis: Identification of alpha-ketoglutarate decarboxylase -- Tian et al. 102 (30): 10670 -- Proceedings of the National Academy of Sciences [My Copy] by J. Tian, R. Bryk, M. Itoh, M. Suematsu, C. Nathan posted to ecoli enzyme fba kinetics tb tca vmax by JeremyZucker on 2007-03-06 23:14:45 as along with 1 group MetabolicModeling

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fba	89
tb	57
metabolic-reconstruction	53
flux-measurements	36
mfa	28
metabolic-engineering	23
metabolite-concentrations	21
13c	19
photosynthesis	19
cyanobacteria	18
ecoli	18
metabolic-models	16
fatty-acid	14
solar-power	13
gc-ms	12
mycolic-acid	12
neurospora	12
biocyc	10
evolution	10
gene-regulation	10
metabolomics	10
palsson	10
biofuel	9
ec	9
yeast	9
orphan-enzyme	8
enzyme	7
tb-fba	7
bib	6
biohacker	6
biopax	6
lipid-biosynthesis	6
sauer	6
solar-energy	6
aspergillus	5
biodiesel	5
cancer	5
hypoxia	5
photomicrodiesel	5
robot-scientist	5
thermodynamics	5
bacteriophage	4
biolog	4
debugging-the-bug	4
eflux	4
evolutionary-dynamics	4
gene-expression	4
genomics	4
kegg	4
semantic-web	4
symbolic-programming	4
synechocystis	4
synthetic-biology	4
agi	3
chemostat	3
chipseq	3
chlorophyll	3
desa	3
drugs	3
ecocyc	3
eficaz	3
enzyme-prediction	3
evodynamics	3
experiments	3
expression-data	3
functional-genomics	3
gene-ko	3
hcv	3
ijr904	3
kinetics	3
lipidomics	3
mca	3
neuralgia	3
pdim	3
recombineering	3
regulatory-networks	3
synechococcus	3
systems-biology	3
ai	2
buchnera	2
cellulose	2
cheminformatics	2
chlamy	2
chronic-pain	2
corynebacterium	2
ethanol	2
functiona-annotation	2
gibbs-energy	2
isoniazid	2
kasa	2
kasb	2
keasling	2
ketamine	2
metabolome	2
mida	2
omics	2
operon	2
orphan-enzymes	2
owled	2
persistence	2
petri-net	2
pks12	2
protein-levels	2
sequence-function-prediction	2
streptomyces	2
symbiosis	2
tca	2
transcriptional-regulatory-networks	2
uncertainty	2
vibrio	2
web	2
accd4	1
adaptive_evolution	1
algae	1
ancestor	1
antibiotics	1
antimicrobial	1
arita	1
bi-level	1
biofuel-cell	1
biowarehouse	1
boshoff	1
bsub	1
bsubtilis	1
carbon_sources	1
cellulase	1
chipchip	1
cmc	1
common	1
constraint-based-modeling	1
co-response-analysis	1
cornish-bowden	1
csaba	1
drug_discovery	1
drug-resistance	1
dynamics	1
edwards	1
ema	1
emu	1
endoglucanase	1
enzyme-pediction	1
escherichia_coli	1
experiment-ontology	1
expresion-data	1
expression-date	1
fabg	1
fadd32	1
flux-coupling	1
ft-ics-ms	1
functional-annotation	1
game-theory	1
gc-gc-ms	1
gc-tof-ms	1
gene_regulation	1
genetics	1
glycerol	1
go	1
graph-layout	1
group-contribution	1
gtl	1
hypergraph	1
jews	1
jin	1
keio	1
knowledge-representation	1
last	1
lysine	1
maldi-tof-ms	1
metabo	1
metabolic-control-analysis	1
metabolic_networks	1
michel-reydellet	1
minimal-genome	1
mmaa1	1
model_modification	1
model_prediction	1
moma	1
monte-carlo	1
nmr	1
nonhousekeeping	1
objective-functions	1
obo	1
optimization	1
pah	1
pal	1
pathway-alignment	1
phenotypes	1
plasmo	1
pln	1
pneu	1
prochlorococcus	1
provenance	1
rahnuma	1
rip	1
seed	1
semantic	1
seq	1
stationarity	1
stephanopoulos	1
substrate-length	1
tami	1
task-complexity	1
tetrazolium	1
thiolactomycin	1
transcription-factors	1
transhydrogenase	1
transporters	1
unk1	1
unk2	1
vmax	1
whib	1

JeremyZucker's ecoli [18 articles] Export

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