JeremyZucker's fba [89 articles] Export

Recent papers added to JeremyZucker's library classified by the tag fba. You can also see everyone's fba.

	Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions. [My Copy] Genome biology, Vol. 9, No. 9. (22 September 2008), R140. by Evan S. Snitkin, Aimée M. Dudley, Daniel M. Janse, Kaisheen Wong, George M. Church, Daniel Segrè posted to yeast phenotypes gene-ko fba biolog by JeremyZucker on 2009-10-29 23:22:05 as along with 2 people michaelbarton imina
	GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000308. by Vinay S. Kumar, Costas D. Maranas posted to optimization model_prediction model_modification metabolic_networks metabolic-reconstruction keio fba escherichia_coli ecoli carbon_sources bi-level by JeremyZucker on 2009-10-16 07:31:41 as along with 1 group MetabolicModeling
	Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth [My Copy] Nature, Vol. 420, No. 6912. (14 November 2002), pp. 186-189. by Rafael U. Ibarra, Jeremy S. Edwards, Bernhard O. Palsson posted to glycerol fba ecoli adaptive_evolution by JeremyZucker on 2009-09-11 19:46:23 as along with 2 people bjorns kdang
	Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production. [My Copy] PLoS computational biology, Vol. 5, No. 8. (28 August 2009), e1000489. by Caroline Colijn, Aaron Brandes, Jeremy Zucker, et al.Desmond S. Lun, Brian Weiner, Maha R. Farhat, Tan-Yun Y. Cheng, D. Branch Moody, Megan Murray, James E. Galagan posted to tb fba expresion-data eflux by JeremyZucker on 2009-08-29 01:11:44 as along with 1 person ptrobajo
	Large-scale identification of genetic design strategies using local search [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Desmond S. Lun, Graham Rockwell, Nicholas J. Guido, et al.Michael Baym, Jonathan A. Kelner, Bonnie Berger, James E. Galagan, George M. Church posted to metabolic-reconstruction fba by JeremyZucker on 2009-08-28 21:20:29 as along with 3 people and 1 group TRHvidsten reyez jjray Synthetic Biology
	Flux balance analysis of photoautotrophic metabolism. [My Copy] Biotechnology progress, Vol. 21, No. 6. (c 2005), pp. 1617-1626. by Avantika A. Shastri, John A. Morgan posted to synechocystis metabolic-reconstruction fba cyanobacteria by JeremyZucker on 2009-08-28 18:05:30 as
	Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 4. by Nanette Boyle, John Morgan posted to metabolic-reconstruction fba chlamy algae by JeremyZucker on 2009-08-28 17:51:09 as along with 3 people TRHvidsten behindtherabbit colinDotAIBN
	iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations [My Copy] Genome Biology, Vol. 10, No. 6. (2009), R69. by Christopher Henry, Jenifer Zinner, Matthew Cohoon, Rick Stevens posted to seed fba bsub by JeremyZucker on 2009-08-28 17:49:57 as along with 2 people abhishek_tiwari barriot
	Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae [My Copy] BMC Genomics, Vol. 9, No. 1. (23 May 2008), 245. by Wanwipa Vongsangnak, Peter Olsen, Kim Hansen, Steen Krogsgaard, Jens Nielsen posted to metabolic-reconstruction fba aspergillus by JeremyZucker on 2009-08-28 01:38:32 as along with 1 group MetabolicModeling
	Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. [My Copy] Applied and environmental microbiology, Vol. 60, No. 10. (1 October 1994), pp. 3724-3731. by A. Varma, B. O. Palsson posted to fba ecoli by JeremyZucker on 2009-08-27 21:40:08 as along with 2 people winterstream madhadron
	Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1831-1832. by Aziz Mithani, Gail M. Preston, Jotun Hein posted to rahnuma metabolic-reconstruction fba by JeremyZucker on 2009-08-26 00:46:38 as along with 3 people dquest poirel renatomilani
	Flux balance analysis of biological systems: applications and challenges [My Copy] Brief Bioinform, Vol. 10, No. 4. (15 March 2009), pp. bbp011-449. by Karthik Raman, Nagasuma Chandra posted to fba by JeremyZucker on 2009-06-10 07:42:03 as along with 8 people karthikraman abhishek_tiwari kshameer sobolevnrm michaelbarton fgibson TRHvidsten yujiangwang
	Analysis of Aspergillus nidulans metabolism at the genome-scale [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Helga David, Ilknur Ozcelik, Gerald Hofmann, Jens Nielsen posted to aspergillus fba metabolic-reconstruction by JeremyZucker on 2009-05-22 02:56:46 as along with 1 person neils
	In silico design and adaptive evolution of Escherichia coli for production of lactic acid. [My Copy] Biotechnol Bioeng, Vol. 91, No. 5. (5 September 2005), pp. 643-648. by S. S. Fong, A. P. Burgard, C. D. Herring, et al.E. M. Knight, F. R. Blattner, C. D. Maranas, B. O. Palsson posted to ecoli evolutionary-dynamics fba metabolic-engineering by JeremyZucker on 2009-04-24 22:20:03 as along with 1 person comb
	The automation of science. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5923. (3 April 2009), pp. 85-89. by Ross D. King, Jem Rowland, Stephen G. Oliver, et al.Michael Young, Wayne Aubrey, Emma Byrne, Maria Liakata, Magdalena Markham, Pinar Pir, Larisa N. Soldatova, Andrew Sparkes, Kenneth E. Whelan, Amanda Clare posted to fba robot-scientist yeast by JeremyZucker on 2009-04-03 08:03:26 as along with 56 people and 2 groups singhsh Sergey_gerbek schwartzjmc yyfwuhan antonkratz CulCog ckai1 jcaddy thegoose tommcdonagh tonamswish qwermish axeltan ocs TobiasAbenius CameronNeylon guhjy davidcsterratt bcondon Scis0000002 kevinemamy TRHvidsten emiko Zephyrus arne muraken vagoskar katiehumphry Effie robertknight acrmartins psique dbikard tyrell_turing Tomste renatomilani subhacom druvus ramanuja sen_cheng coela VGreiff hagechouchin443 Benja austin stober rdiaz Fortran napvasconcelos mikel_egana allysonlister dullhunk fgibson pkonings jbhiatt tmmurali NaCTeM MetabolicModeling
	Using a logical model to predict the growth of yeast [My Copy] BMC Bioinformatics, Vol. 9 (12 February 2008), 97. by K. E. Whelan, R. D. King posted to fba robot-scientist yeast by JeremyZucker on 2009-04-03 08:02:14 as along with 5 people and 1 group schwartzjmc Scis0000002 dullhunk heliopais tmmurali MetabolicModeling
	On the use of qualitative reasoning to simulate and identify metabolic pathways. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 9. (1 May 2005), pp. 2017-2026. by R. D. King, S. M. Garrett, G. M. Coghill posted to fba metabolic-reconstruction robot-scientist by JeremyZucker on 2009-04-03 07:55:27 as
	A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology [My Copy] Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1155-1160. by Markus J. Herrgard, Neil Swainston, Paul Dobson, et al.Warwick B. Dunn, K. Yalcin Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasie, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell posted to fba metabolic-reconstruction yeast by JeremyZucker on 2009-04-01 01:13:31 as along with 22 people and 2 groups m_j pmendes windman83 jfr raiyar neilswainston irenas chasmand schwartzjmc pinney pauldobson alaninmcr allysonlister zwang guhjy dbk michaelbarton ptrobajo neils dullhunk pengchy tmmurali MetabolicModeling BergmanLab
	Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger [My Copy] Molecular Systems Biology, Vol. 4 (25 March 2008) by Mikael R. Andersen, Michael L. Nielsen, Jens Nielsen posted to aspergillus fba metabolic-reconstruction by JeremyZucker on 2009-04-01 00:50:20 as along with 5 people dadiamah schwartzjmc egonw dullhunk westoll
	Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network. [My Copy] Applied microbiology and biotechnology, Vol. 80, No. 5. (October 2008), pp. 849-862. by J. Lee, H. Yun, A. M. Feist, B. Ø. Palsson, S. Y. Lee posted to biodiesel biofuel fba metabolic-models metabolic-reconstruction by JeremyZucker on 2009-03-17 19:25:17 as along with 2 people michaelbarton operon
	In silico genome-scale reconstruction and validation of the Corynebacterium glutamicum metabolic network. [My Copy] Biotechnology and bioengineering, Vol. 102, No. 2. (1 February 2009), pp. 583-597. by K. R. Kjeldsen, J. Nielsen posted to biodiesel biofuel corynebacterium fba metabolic-models metabolic-reconstruction by JeremyZucker on 2009-03-17 19:24:52 as along with 2 people and 1 group kukki jholder MetabolicModeling
	Genome-scale model for <I>Clostridium acetobutylicum</I>: Part I. Metabolic network resolution and analysis [My Copy] Biotechnology and Bioengineering, Vol. 101, No. 5. (1 December 2008), pp. 1036-1052. by Ryan S. Senger, Eleftherios T. Papoutsakis posted to biodiesel biofuel fba metabolic-models metabolic-reconstruction by JeremyZucker on 2009-03-17 19:24:30 as along with 1 person Winzer
	Genome-scale model for Clostridium acetobutylicum: Part II. Development of specific proton flux states and numerically determined sub-systems. [My Copy] Biotechnology and bioengineering, Vol. 101, No. 5. (1 December 2008), pp. 1053-1071. by R. S. Senger, E. T. Papoutsakis posted to biodiesel biofuel fba metabolic-models metabolic-reconstruction by JeremyZucker on 2009-03-17 19:24:05 as along with 1 group MetabolicModeling
	Toward whole cell modeling and simulation: comprehensive functional genomics through the constraint-based approach. [My Copy] Progress in drug research. Fortschritte der Arzneimittelforschung. Progrès des recherches pharmaceutiques, Vol. 64 (2007) by A. R. Joyce, B. O. Palsson posted to constraint-based-modeling fba by JeremyZucker on 2009-03-06 21:35:30 as along with 1 group MetabolicModeling
	Use of constraint-based modeling for the prediction and validation of antimicrobial targets. [My Copy] Biochemical pharmacology, Vol. 71, No. 7. (30 March 2006), pp. 1026-1035. by J. D. Trawick, C. H. Schilling posted to antibiotics antimicrobial fba by JeremyZucker on 2009-03-05 19:47:31 as
	Top-Down Analysis of Temporal Hierarchy in Biochemical Reaction Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000177. by Neema Jamshidi, Bernhard Palsson posted to fba kinetics by JeremyZucker on 2009-03-05 19:35:12 as along with 3 people aramesh2 raik Ema
	Use of Randomized Sampling for Analysis of Metabolic Networks [My Copy] Journal of Biological Chemistry, Vol. 284, No. 9. (27 February 2009), pp. 5457-5461. by Jan Schellenberger, Bernhard Palsson posted to fba monte-carlo by JeremyZucker on 2009-03-05 19:29:44 as along with 2 people abhishek_tiwari cerca
	A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 24. by Gavin Thomas, Jeremy Zucker, Sandy Macdonald, Anatoly Sorokin, Igor Goryanin, Angela Douglas posted to buchnera fba metabolic-reconstruction symbiosis by JeremyZucker on 2009-03-02 16:43:15 as along with 2 people and 1 group kmachemer behindtherabbit MetabolicModeling
	Antibiotic Overproduction in Streptomyces coelicolor A3(2) Mediated by Phosphofructokinase Deletion [My Copy] J. Biol. Chem., Vol. 283, No. 37. (12 September 2008), pp. 25186-25199. by Irina Borodina, Jeroen Siebring, Jie Zhang, et al.Colin P. Smith, Geertje van Keulen, Lubbert Dijkhuizen, Jens Nielsen posted to fba metabolic-engineering streptomyces by JeremyZucker on 2009-03-02 15:20:13 as
	Integration of gene expression data into genome-scale metabolic models. [My Copy] Metab Eng, Vol. 6, No. 4. (October 2004), pp. 285-293. by M. Akesson, J. Förster, J. Nielsen posted to eflux expression-data fba flux-measurements by JeremyZucker on 2009-02-06 23:11:45 as along with 1 person koller
	Genome-scale modeling of <I>Synechocystis</I> sp. PCC 6803 and prediction of pathway insertion [My Copy] Journal of Chemical Technology & Biotechnology, Vol. 9999, No. 9999. (2008), n/a. by Pengcheng Fu posted to cyanobacteria fba synechocystis by JeremyZucker on 2009-01-24 09:02:48 as
	Evaluation of Central Metabolism Based on a Genomic Database of Synechocystis PCC6803 [My Copy] BIOTECHNOLOGY AND BIOPROCESS ENGINEERING, Vol. 12, No. 2. (2007), pp. 165-173. by Hong posted to cyanobacteria fba synechocystis by JeremyZucker on 2009-01-24 08:59:07 as
	Context-Specific Metabolic Networks Are Consistent with Experiments [My Copy] PLoS Comput Biol, Vol. 4, No. 5. (16 May 2008), e1000082. by Scott A. Becker, Bernhard O. Palsson posted to eflux fba palsson by JeremyZucker on 2008-11-22 01:08:47 as along with 4 people guhjy aramesh2 roys ptrobajo
	MetaPath Online: a web server implementation of the network expansion algorithm. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by T. Handorf, O. Ebenhöh posted to fba symbolic-programming by JeremyZucker on 2008-08-08 21:35:17 as along with 3 people pablocarb schwartzjmc lflorez
	Predicting biological system objectives de novo from internal state measurements. [My Copy] BMC bioinformatics, Vol. 9 (2008) by E. P. Gianchandani, M. A. Oberhardt, A. P. Burgard, C. D. Maranas, J. A. Papin posted to fba objective-functions by JeremyZucker on 2008-07-26 10:48:19 as
	The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks. [My Copy] Eur J Biochem, Vol. 271, No. 14. (July 2004), pp. 2905-2922. by H. G. Holzhütter posted to fba flux-measurements stationarity by JeremyZucker on 2008-07-26 10:44:08 as along with 4 people and 1 group schwartzjmc alexg sobolevnrm pmendes baker-group
	Duality, Thermodynamics, and the Linear Programming Problem in Constraint-Based Models of Metabolism [My Copy] Physical Review Letters, Vol. 99, No. 10. (2007) by Patrick B. Warren, Janette L. Jones posted to fba gibbs-energy thermodynamics by JeremyZucker on 2008-07-25 21:02:40 as along with 1 person elm
	Thermodynamics-Based Metabolic Flux Analysis [My Copy] Biophysical Journal, Vol. 92, No. 5. (01 March 2007), pp. 1792-1805. by Christopher S. Henry, Linda J. Broadbelt, Vassily Hatzimanikatis posted to fba mfa thermodynamics by JeremyZucker on 2008-07-25 10:30:19 as along with 5 people winterstream schwartzjmc vpenelle BjornJohansson lylu
	Flux balance analysis in the era of metabolomics [My Copy] Brief Bioinform, Vol. 7, No. 2. (1 June 2006), pp. 140-150. by Jong M. Lee, Erwin P. Gianchandani, Jason A. Papin posted to fba metabolomics by JeremyZucker on 2008-07-25 10:28:53 as along with 3 people yujiangwang icircle edwardmorrissey
	Duality, thermodynamics, and the linear programming problem in constraint-based models of metabolism. [My Copy] Physical review letters, Vol. 99, No. 10. (7 September 2007) by P. B. Warren, J. L. Jones posted to fba thermodynamics by JeremyZucker on 2008-07-25 03:49:23 as
	Systematic assignment of thermodynamic constraints in metabolic networks models [My Copy] BMC Bioinformatics, Vol. 7 (23 November 2006), 512. by Anne Kummel, Sven Panke, Matthias Heinemann posted to fba metabolite-concentrations thermodynamics by JeremyZucker on 2008-07-25 03:42:58 as along with 3 people eweaver tny aswin
	Investigating metabolite essentiality through genome-scale analysis of Escherichia coli production capabilities. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 9. (1 May 2005), pp. 2008-2016. by M. Imieliński, C. Belta, A. Halász, H. Rubin posted to ecoli fba gene-ko ijr904 metabolite-concentrations by JeremyZucker on 2008-07-25 03:42:17 as along with 1 person hryk
	Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks. [My Copy] BMC Syst Biol, Vol. 1 (2007) by A. Hoppe, S. Hoffmann, H. G. Holzhütter posted to fba ijr904 metabolite-concentrations by JeremyZucker on 2008-07-25 03:03:44 as along with 4 people aheilbut schwartzjmc fishtank marcio
	Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007) by Neema Jamshidi, Bernhard Palsson posted to fba palsson tb tb-fba by JeremyZucker on 2008-07-23 05:01:01 as along with 2 people leonidus alexg
	Analysis of optimality in natural and perturbed metabolic networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 23. (12 November 2002), pp. 15112-15117. by D. Segrè, D. Vitkup, G. M. Church posted to fba moma by JeremyZucker on 2008-07-21 23:21:24 as along with 8 people michaelbarton rklancer nirfriedman koller gcalda kdang roys carlk
	From annotated genomes to metabolic flux models and kinetic parameter fitting. [My Copy] OMICS, Vol. 7, No. 3. (2003), pp. 301-316. by D. Segrè, J. Zucker, J. Katz, et al.X. Lin, P. D'haeseleer, W. P. Rindone, P. Kharchenko, D. H. Nguyen, M. A. Wright, G. M. Church posted to biocyc fba kinetics metabolic-reconstruction by JeremyZucker on 2008-07-21 23:20:44 as along with 2 people koller fishtank
	Genome-scale thermodynamic analysis of Escherichia coli metabolism. [My Copy] Biophysical journal, Vol. 90, No. 4. (15 February 2006), pp. 1453-1461. by Christopher S. Henry, Matthew D. Jankowski, Linda J. Broadbelt, Vassily Hatzimanikatis posted to ecoli fba gibbs-energy thermodynamics by JeremyZucker on 2008-07-19 01:12:27 as along with 4 people winterstream schwartzjmc csanford lylu
	Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data. [My Copy] Molecular systems biology, Vol. 2 (2006) by A. Kümmel, S. Panke, M. Heinemann posted to fba metabolite-concentrations by JeremyZucker on 2008-07-18 21:51:45 as along with 1 person marcio
	Dynamic analysis of optimality in myocardial energy metabolism under normal and ischemic conditions [My Copy] Mol Syst Biol, Vol. 2 (6 June 2006) by Ruo-Yu Luo, Sha Liao, Guan-Yang Tao, et al.Yuan-Yuan Li, Shaoqun Zeng, Yi-Xue Li, Qingming Luo posted to fba flux-measurements metabolite-concentrations by JeremyZucker on 2008-07-18 09:15:48 as
	Transcriptomic Analysis Identifies Growth Rate Modulation as a Component of the Adaptation of Mycobacteria to Survival inside the Macrophage [My Copy] J. Bacteriol., Vol. 189, No. 11. (1 June 2007), pp. 3969-3976. by D. J. V. Beste, E. Laing, B. Bonde, C. Avignone-Rossa, M. E. Bushell, J. J. Mcfadden posted to fba metabolic-models tb by JeremyZucker on 2008-07-18 05:42:53 as

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fba	89
tb	58
metabolic-reconstruction	53
flux-measurements	37
mfa	28
metabolic-engineering	23
metabolite-concentrations	21
13c	19
photosynthesis	19
cyanobacteria	18
ecoli	18
metabolic-models	16
fatty-acid	14
solar-power	13
gc-ms	12
mycolic-acid	12
neurospora	12
biocyc	10
evolution	10
gene-regulation	10
metabolomics	10
palsson	10
biofuel	9
ec	9
yeast	9
orphan-enzyme	8
enzyme	7
tb-fba	7
bib	6
biohacker	6
biopax	6
lipid-biosynthesis	6
sauer	6
solar-energy	6
aspergillus	5
biodiesel	5
cancer	5
hypoxia	5
kegg	5
photomicrodiesel	5
robot-scientist	5
thermodynamics	5
bacteriophage	4
biolog	4
debugging-the-bug	4
eflux	4
evolutionary-dynamics	4
gene-expression	4
genomics	4
lipidomics	4
semantic-web	4
symbolic-programming	4
synechocystis	4
synthetic-biology	4
agi	3
chemostat	3
chipseq	3
chlorophyll	3
desa	3
drugs	3
ecocyc	3
eficaz	3
enzyme-prediction	3
evodynamics	3
experiments	3
expression-data	3
functional-genomics	3
gene-ko	3
hcv	3
ijr904	3
kinetics	3
mca	3
neuralgia	3
pdim	3
recombineering	3
regulatory-networks	3
synechococcus	3
systems-biology	3
ai	2
buchnera	2
cellulose	2
cheminformatics	2
chlamy	2
chronic-pain	2
corynebacterium	2
ethanol	2
functiona-annotation	2
gibbs-energy	2
isoniazid	2
kasa	2
kasb	2
keasling	2
ketamine	2
metabolome	2
mida	2
omics	2
operon	2
orphan-enzymes	2
owled	2
persistence	2
petri-net	2
pks12	2
protein-levels	2
sequence-function-prediction	2
streptomyces	2
symbiosis	2
tca	2
transcriptional-regulatory-networks	2
uncertainty	2
vibrio	2
web	2
accd4	1
adaptive_evolution	1
algae	1
ancestor	1
antibiotics	1
antimicrobial	1
arita	1
bi-level	1
biofuel-cell	1
biowarehouse	1
boshoff	1
bsub	1
bsubtilis	1
carbon_sources	1
cellulase	1
chipchip	1
cmc	1
common	1
constraint-based-modeling	1
co-response-analysis	1
cornish-bowden	1
csaba	1
drug_discovery	1
drug-resistance	1
dynamics	1
edwards	1
eicosanoid	1
ema	1
emu	1
endoglucanase	1
enzyme-pediction	1
escherichia_coli	1
experiment-ontology	1
expresion-data	1
expression-date	1
fabg	1
fadd32	1
flux-coupling	1
ft-ics-ms	1
functional-annotation	1
game-theory	1
gc-gc-ms	1
gc-tof-ms	1
gene_regulation	1
genetics	1
glycerol	1
go	1
graph-layout	1
group-contribution	1
gtl	1
heat_shock_proteins	1
human_macrophages	1
hypergraph	1
iron_acquisition	1
jews	1
jin	1
kdo-lipid-a	1
keio	1
kinetic_model	1
knowledge-representation	1
last	1
lysine	1
macrophage	1
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maldi-tof-ms	1
metabo	1
metabolic-control-analysis	1
metabolic_networks	1
metabolism	1
michel-reydellet	1
minimal-genome	1
mmaa1	1
model_modification	1
model_prediction	1
moma	1
monte-carlo	1
mycobacteria	1
nmr	1
nonhousekeeping	1
objective-functions	1
obo	1
optimization	1
pah	1
pal	1
pathway-alignment	1
phenotypes	1
plasmo	1
pln	1
pneu	1
prochlorococcus	1
provenance	1
rahnuma	1
rip	1
seed	1
semantic	1
seq	1
stationarity	1
stephanopoulos	1
substrate-length	1
tami	1
task-complexity	1
tetrazolium	1
thiolactomycin	1
transcription-factors	1
transhydrogenase	1
transporters	1
unk1	1
unk2	1
vmax	1
whib	1

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