Katje's methods [17 articles] Export

Recent papers added to Katje's library classified by the tag methods. You can also see everyone's methods.

	Windshield splatter analysis with the Galaxy metagenomic pipeline [My Copy] Genome Research, Vol. 19, No. 11. (9 November 2009), pp. 2144-2153. by Sergei Kosakovsky Pond, Samir Wadhawan, Francesca Chiaromonte, et al.Guruprasad Ananda, Wen-Yu Chung, James Taylor, Anton Nekrutenko posted to methods metagenome by Katje on 2009-11-09 14:50:43 as along with 8 people and 2 groups jmeppley seb1 djkt operon neils idonaldson jgill kshameer microbiology_nijmegen iSEEM
	Seasonal Dynamics and Metagenomic Characterization of Estuarine Viriobenthos Assemblages by Randomly Amplified Polymorphic DNA PCR [My Copy] Appl. Environ. Microbiol., Vol. 75, No. 8. (15 April 2009), pp. 2259-2265. by Rebekah R. Helton, K. Eric Wommack posted to virus methods by Katje on 2009-11-09 13:57:26 as
	An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP) [My Copy] PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2566. by Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A. Eisen posted to phylogeny methods metagenome diversity 16s by Katje on 2009-11-09 10:39:45 as along with 7 people and 4 groups AaronDarling skembel sriesenfeld druvus vaulot skato_toyaku djkt microbiology_nijmegen Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM
	Systematic artifacts in metagenomes from complex microbial communities [My Copy] The ISME Journal, Vol. 3, No. 11. (09 July 2009), pp. 1314-1317. by Vicente Gomez-Alvarez, Tracy K. Teal, Thomas M. Schmidt posted to methods metagenome by Katje on 2009-10-20 21:57:15 as along with 1 person jgill
	Systems Biology: Functional analysis of natural microbial consortia using community proteomics [My Copy] Nat Rev Micro, Vol. 7, No. 3. (March 2009), pp. 196-205. by Nathan C. Verberkmoes, Vincent J. Denef, Robert L. Hettich, Jillian F. Banfield posted to diversity ecology metagenome methods proteomics by Katje on 2009-02-16 15:43:40 as along with 2 people and 1 group kinestetika behindtherabbit microbiology_nijmegen
	Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology [My Copy] FEMS Microbiology Ecology, Vol. 67, No. 1. (2009), pp. 6-20. by Cindy J. Smith, Mark A. Osborn posted to methods qpcr by Katje on 2008-12-11 17:36:58 as along with 1 person and 1 group skato_toyaku microbiology_nijmegen
	Population dynamics of marine magnetotactic bacteria in a meromictic salt pond described with qPCR [My Copy] Environmental Microbiology, Vol. 9, No. 9. (September 2007), pp. 2162-2174. by Simmons, L. Sheri, Bazylinski, A. Dennis, Edwards, J. Katrina posted to methods qpcr by Katje on 2008-12-05 14:00:23 as along with 1 person and 1 group mblwhoi microbiology_nijmegen
	The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000160. by Marco Punta, Yanay Ofran posted to genome methods proteomics by Katje on 2008-11-25 22:11:14 as along with 19 people and 1 group pansapiens kiekyon Thaverkamp niallhaslam daforerog Zalanszabo bpcusack joseph_x_zhou taguchi sjcockell markchen ptrobajo chad_davis druvus mdstobbe giovenko nilanjanroy reyez GeeSharpMinor microbiology_nijmegen
	A simple, fast, and accurate method of phylogenomic inference [My Copy] Genome Biology, Vol. 9, No. 10. (13 October 2008), R151. by Martin Wu, Jonathan A. Eisen posted to methods phylogeny by Katje on 2008-11-20 12:17:27 as along with 12 people and 2 groups dakelley jeargle AaronDarling zwang cgaugain treangen operon ellakat scryrps djkt aramata druvus microbiology_nijmegen iSEEM
	Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures [My Copy] ISME J, Vol. 2, No. 11. (19 June 2008), pp. 1122-1133. by Nico Jehmlich, Frank Schmidt, Martin von Bergen, Hans-Hermann Richnow, Carsten Vogt posted to methods proteomics sip stable_isotopes by Katje on 2008-11-04 17:26:27 as along with 1 group microbiology_nijmegen
	Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington [My Copy] ISME J, Vol. 2, No. 7. (27 March 2008), pp. 696-706. by Marina G. Kalyuzhnaya, Mary E. Lidstrom, Ludmila Chistoserdova posted to ecology methanotrophy methods methylotrophy related_sequence by Katje on 2008-10-02 10:18:58 as along with 3 people and 1 group kinestetika ax Huub_odc microbiology_nijmegen
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to annotation genome methods by Katje on 2008-09-26 16:32:38 as along with 16 people and 5 groups n00c operon michaelbarton azazello Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot djkt stajich semrich BergmanLab Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen Mycology
	Direct Nitric Oxide Detection in Aqueous Solution by Copper(II) Fluorescein Complexes [My Copy] J. Am. Chem. Soc., Vol. 128, No. 44. (8 November 2006), pp. 14364-14373. by M. H. Lim, B. A. Wong, W. H. Pitcock, D. Mokshagundam, M. H. Baik, S. J. Lippard posted to biochemistry methods no by Katje on 2008-09-24 16:05:20 as along with 1 group microbiology_nijmegen
	Multiple displacement amplification as a pre-polymerase chain reaction (pre-PCR) to process difficult to amplify samples and low copy number sequences from natural environments [My Copy] Environmental Microbiology, Vol. 7, No. 7. (July 2005), pp. 1024-1028. by Juan M. Gonzalez, M. Carmen Portillo, Cesareo Saiz-Jimenez posted to methods wga by Katje on 2008-09-12 11:08:26 as along with 1 person and 2 groups vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Unbiased Whole-Genome Amplification Directly From Clinical Samples [My Copy] Genome Research, Vol. 13, No. 5. (1 May 2003), pp. 954-964. by Seiyu Hosono, A. Fawad Faruqi, Frank B. Dean, et al.Yuefen Du, Zhenyu Sun, Xiaohong Wu, Jing Du, Stephen F. Kingsmore, Michael Egholm, Roger S. Lasken posted to methods wga by Katje on 2008-09-12 11:06:49 as along with 6 people and 3 groups mariuswalter polivares skato_toyaku vaulot Olaf_Ilzins echinotrix JLab Microbial-Ecology Papers recommended by the Roscoff Plankton Group
	Linking microbial phylogeny to metabolic activity at the single cell level using enhanced element labeling - catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS. [My Copy] Appl Environ Microbiol (21 March 2008) by Sebastian Behrens, Tina Lösekann, Jennifer Pett-Ridge, et al.Peter K K. Weber, Wing-On O. Ng, Bradley S S. Stevenson, Ian D D. Hutcheon, David A A. Relman, Alfred M M. Spormann posted to fish methods sims stable_isotopes by Katje on 2008-05-14 11:57:42 as along with 3 people and 2 groups skato_toyaku kinestetika MALDI_Imaging_lille microbiology_nijmegen MALDI Imaging
	Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques [My Copy] Nature Reviews Microbiology, Vol. 6, No. 5., pp. 339-348. by Rudolf Amann, Bernhard M. Fuchs posted to ecology fish methods review by Katje on 2008-04-22 19:09:05 as along with 4 people and 5 groups vrich vaulot Huub_odc jlgreen microbiology_nijmegen Microbial-Ecology Papers recommended by the Roscoff Plankton Group Green Lab iSEEM

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diversity	17
evolution	17
methods	17
genome	16
methanotrophy	13
anaerobic	12
ecology	12
marine	12
theory	12
metagenome	11
denitrification	8
early_earth	8
biochemistry	7
methanogenesis	7
methylotrophy	7
phylogeny	7
alkane	6
review	6
stable_isotopes	6
annotation	5
n-cycle	5
proteomics	5
virus	5
horizontal_gene_transfer	4
no	4
qpcr	4
anme	3
fish	3
glycyl-radical	3
nitrification	3
oxygen	3
wga	3
16s	2
aquifer	2
cytochromes	2
damo	2
fuel_cells	2
nanowires	2
novel_guilds	2
physiology	2
pmmo	2
related_sequence	2
sims	2
species_concept	2
srb	2
succession	2
18o	1
autotrophy	1
carbon_fixation	1
deep_biosphere	1
global_ocean	1
hao	1
hydrogen	1
introduction	1
methane_cycle	1
methylococcus	1
microcosms	1
nc10	1
nirk	1
nirs	1
oxidase	1
phage	1
rubisco	1
sip	1
sociology	1
sulfate	1
transcriptomics	1

Katje's methods [17 articles] Export

Katje's tags