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htSeqTools: high-throughput sequencing quality control, processing and visualization in R

by: Evarist Planet, Camille S. Attolini, Oscar Reina, Oscar Flores, David Rossell
Bioinformatics, Vol. 28, No. 4. (15 February 2012), pp. 589-590, doi:10.1093/bioinformatics/btr700  Key: citeulike:10161003

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Abstract

Summary: We provide a Bioconductor package with quality assessment, processing and visualization tools for high-throughput sequencing data, with emphasis in ChIP-seq and RNA-seq studies. It includes detection of outliers and biases, inefficient immuno-precipitation and overamplification artifacts, de novo identification of read-rich genomic regions and visualization of the location and coverage of genomic region lists.


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