MarcoAlvarez's library 285 articles Export

	Predicting Enzyme Class From Protein Structure Without Alignments [My Copy] Journal of Molecular Biology, Vol. 345, No. 1. (07 January 2005), pp. 187-199. by Paul D. Dobson, Andrew J. Doig posted to protein-structure protein-function by MarcoAlvarez on 2009-11-02 19:02:05 as along with 5 people barmak7282 pauldobson baaden eweaver dullhunk
	A genetic similarity algorithm for searching the Gene Ontology terms and annotating anonymous protein sequences [My Copy] Journal of Biomedical Informatics, Vol. 41, No. 1. (February 2008), pp. 65-81. by R. Othman, S. Deris, R. Illias posted to semantic-similarity gene-ontology by MarcoAlvarez on 2009-09-22 05:05:24 as
	A Knowledge-Based Clustering Algorithm Driven by Gene Ontology [My Copy] Journal of Biopharmaceutical Statistics, Vol. 14, No. 3. (2004), pp. 687-700. by Jill Cheng, Melissa Cline, John Martin, et al.David Finkelstein, Tarif Awad, David Kulp, Michael A. Siani-Rose posted to semantic-similarity gene-ontology by MarcoAlvarez on 2009-09-22 04:56:28 as
	Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations [My Copy] Nucl. Acids Res., Vol. 34, No. 7. (26 April 2006), pp. 2137-2150. by Xiaomei Wu, Lei Zhu, Jie Guo, Da-Yong Zhang, Kui Lin posted to semantic-similarity gene-ontology by MarcoAlvarez on 2009-09-22 04:51:07 as along with 1 person iris_2001
	The Universal Protein Resource (UniProt) 2009. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D169-174. by UniProt Consortium posted to uniprot by MarcoAlvarez on 2009-09-11 02:13:35 as along with 12 people saunders barmak7282 azazello badi tfuji nedwards niallhaslam bicko gjuggler lptolik coela sjcockell
	The Pfam protein families database. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D281-288. by Robert D. Finn, John Tate, Jaina Mistry, et al.Penny C. Coggill, Stephen John J. Sammut, Hans-Rudolf R. Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. Sonnhammer, Alex Bateman posted to pfam by MarcoAlvarez on 2009-09-11 01:45:09 as along with 13 people sjcockell badi calderonv katholt urgi guhjy idoerg BioNica paszkows bicko niallhaslam gjuggler coela
	Semantic Similarity in Biomedical Ontologies [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000443. by Catia Pesquita, Daniel Faria, André O. Falcão, Phillip Lord, Francisco M. Couto posted to semantic-similarity gene-ontology by MarcoAlvarez on 2009-09-10 23:03:31 as along with 9 people and 1 group sobolevnrm bertelsen adamjamesreid fgibson dullhunk guhjy badger_master phoenixzxl druvus Journal picks
	The GOA database in 2009--an integrated Gene Ontology Annotation resource [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D396-403. by Daniel Barrell, Emily Dimmer, Rachael P. Huntley, David Binns, Claire O'Donovan, Rolf Apweiler posted to gene-ontology by MarcoAlvarez on 2009-09-09 20:03:49 as along with 5 people and 1 group avilella guhjy sgoetz lptolik paszkows Ensembl Compara citations
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted to gene-ontology by MarcoAlvarez on 2009-09-05 00:24:13 as along with 74 people and 7 groups Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
	Assessing the research and education quality of the top Brazilian Computer Science graduate programs [My Copy] SIGCSE Bull., Vol. 40, No. 2. (2008), pp. 135-145. by Alberto H. F. Laender, Carlos J. P. de Lucena, José C. Maldonado, de Souza, Nivio Ziviani posted to computing-education by MarcoAlvarez on 2009-07-22 18:25:53 as along with 1 person birukou
	Ten Simple Rules for Choosing between Industry and Academia [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000388. by David B. Searls posted to academia by MarcoAlvarez on 2009-07-19 00:02:00 as along with 36 people and 3 groups welliegirl Sergey_gerbek cyounkin Tomste Horduna aaltenburger Zephyrus CulCog thegoose Yanno timflutre tnhh PeteField sobolevnrm Stew dbikard jasontsai casutton franklu310 kieran101 chrisamiller rdiaz daveGerrard reyez neils marekrud Borelli psique kshameer gjuggler sdaehne flips ppgardne fgibson barry dullhunk Bioinformatics - CRUK Journal picks McCammon
	Beyond computational thinking [My Copy] Commun. ACM, Vol. 52, No. 6. (2009), pp. 28-30. by Peter J. Denning posted to computing-education by MarcoAlvarez on 2009-07-12 01:55:09 as
	Is software engineering engineering? [My Copy] Commun. ACM, Vol. 52, No. 3. (2009), pp. 24-26. by Peter J. Denning, Richard D. Riehle posted to computing-education by MarcoAlvarez on 2009-07-12 01:53:28 as along with 2 people ashwinn architect
	Great principles of computing [My Copy] Commun. ACM, Vol. 46, No. 11. (November 2003), pp. 15-20. by Peter J. Denning posted to computing-education by MarcoAlvarez on 2009-07-12 01:52:46 as along with 1 person kistijantoro
	Information theory applied to the sparse gene ontology annotation network to predict novel gene function [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i529-538. by Ying Tao, Lee Sam, Jianrong Li, Carol Friedman, Yves A. Lussier posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-07-06 09:24:58 as along with 3 people yas ndiaz guhjy
	A transversal approach to predict gene product networks from ontology-based similarity [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (02 July 2007), 235. by Julie Chabalier, Jean Mosser, Anita Burgun posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-07-06 09:21:30 as along with 1 person and 2 groups dagmar dIEMoSIRIS compneur
	Quantitative assessment of relationship between sequence similarity and function similarity [My Copy] BMC Genomics, Vol. 8, No. 1. (2007), 222. by Trupti Joshi, Dong Xu posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-07-05 22:37:17 as along with 3 people and 1 group thegoose2 Keywan tharris C. elegans / WormBase
	Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 472. by Tao Xu, LinFang Du, Yan Zhou posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-07-05 22:30:47 as along with 6 people sgoetz cgaugain saket kshameer barriot phoenixzxl
	G-SESAME: web tools for GO-term-based gene similarity analysis and knowledge discovery [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W345-349. by Zhidian Du, Lin Li, Chin-Fu Chen, Philip S. Yu, James Z. Wang posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-07-05 22:29:07 as along with 1 person sjcockell
	Correlation between gene expression and GO semantic similarity [My Copy] Computational Biology and Bioinformatics, IEEE/ACM Transactions on In Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 2, No. 4. (c 2005), pp. 330-338. by J. L. Sevilla, V. Segura, A. Podhorski, et al.E. Guruceaga, J. M. Mato, L. A. Martinez-Cruz, F. J. Corrales, A. Rubio posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-07-04 21:54:34 as along with 1 person macavity1g
	A New Path Length Measure Based on GO for Gene Similarity with Evaluation using SGD Pathways [My Copy] Computer-Based Medical Systems, 2008. CBMS '08. 21st IEEE International Symposium on In Computer-Based Medical Systems, 2008. CBMS '08. 21st IEEE International Symposium on (2008), pp. 590-595. by A. Nagar, H. Al-Mubaid posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-07-04 10:12:05 as
	Use and misuse of the gene ontology annotations [My Copy] Nature Reviews Genetics, Vol. 9, No. 7. (13 May 2008), pp. 509-515. by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici posted to gene-ontology by MarcoAlvarez on 2009-07-04 03:22:41 as along with 40 people and 3 groups singhsh epigenetics davidmam Thaverkamp druvus dullhunk suizan dolchan Borelli Zephyrus VGreiff klo thomaskelder ilyashl phoenixzxl isakemal bertelsen daforerog jfr djkt guhjy aheilbut mariakmejia cmzmasek A_Olympia realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck rvosa bpcusack 8_01 logics of knowledge FAB-lab
	GS2: an efficiently computable measure of GO-based similarity of gene sets [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1178-1184. by Troy Ruths, Derek Ruths, Luay Nakhleh posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-07-04 02:58:33 as along with 4 people guhjy sgoetz chrisamiller nuin
	Defining functional distances over gene ontology. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 50. by A. del Pozo, F. Pazos, A. Valencia posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-07-04 02:44:00 as along with 10 people and 2 groups biomcgary sgoetz wilbur barry tny grahamc sobolevnrm barriot carlk guhjy Bioinformatics baker-group
	Gene Ontology term overlap as a measure of gene functional similarity [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (04 August 2008), 327. by Meeta Mistry, Paul Pavlidis posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-07-04 02:37:10 as along with 5 people sgoetz bertelsen ndiaz guhjy barriot
	A relation based measure of semantic similarity for Gene Ontology annotations [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 468. by Brendan Sheehan, Aaron Quigley, Benoit Gaudin, Simon Dobson posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-07-04 02:33:33 as along with 9 people and 1 group stefanorb sgoetz sobolevnrm guhjy pengchy Keywan davidecellai phoenixzxl lptolik baker-group
	Your students are your legacy [My Copy] Commun. ACM, Vol. 52, No. 3. (2009), pp. 30-33. by David A. Patterson posted to computing-education by MarcoAlvarez on 2009-07-04 02:14:51 as along with 5 people ashwinn architect spl elsantosneto pwais
	Assessing semantic similarity measures for the characterization of human regulatory pathways [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 967-973. by Xiang Guo, Rongxiang Liu, Craig D. Shriver, Hai Hu, Michael N. Liebman posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-06-08 23:14:03 as along with 1 person and 1 group jmuhlich SorgerLab
	A Tutorial on Principal Component Analysis [My Copy] (2009) by Jonathon Shlens posted to feature-selection by MarcoAlvarez on 2009-05-19 23:38:43 as along with 2 people mat4saj matt1st
	Image retrieval with graph kernel on regions [My Copy] Pattern Recognition, 2008. ICPR 2008. 19th International Conference on In Pattern Recognition, 2008. ICPR 2008. 19th International Conference on (2008), pp. 1-4. by J. Lebrun, S. Philipp-Foliguet, P. H. Gosselin posted to graph-kernel image-retrieval by MarcoAlvarez on 2009-05-19 02:32:24 as
	Graph kernels based on tree patterns for molecules [My Copy] Machine Learning by Pierre Mahé, Jean-Philippe Vert posted to graph-kernel by MarcoAlvarez on 2009-05-19 02:28:10 as along with 1 person ajbattle
	Chemoinformatics---an introduction for computer scientists [My Copy] ACM Comput. Surv., Vol. 41, No. 2. (2009), pp. 1-38. by Nathan Brown posted to chemoinformatics by MarcoAlvarez on 2009-04-29 10:21:17 as along with 1 person fabgoos
	Bioinformatics\—an introduction for computer scientists [My Copy] ACM Comput. Surv., Vol. 36, No. 2. (June 2004), pp. 122-158. by Jacques Cohen posted to bioinformatics by MarcoAlvarez on 2009-04-29 10:19:24 as along with 16 people and 3 groups suzhan ruichu druvus pwais neilernst malenitah2 asilva Ayest smithco eweaver afragop bigbossman mmuecke sugarexpletive quianominorleo bozdagd CHISEL Complex_Real_Networks Plant-Tissue-Simulation
	Better multiclass classification via a margin-optimized single binary problem [My Copy] Pattern Recognition Letters, Vol. 29, No. 14. (15 October 2008), pp. 1954-1959. by Ran El-Yaniv, Dmitry Pechyony, Elad Yom-Tov posted to classification by MarcoAlvarez on 2009-04-29 07:19:02 as along with 2 people sdvillal jjrodriguez
	Support-Vector Networks [My Copy] Mach. Learn., Vol. 20, No. 3. (1995), pp. 273-297. by Erin L. Allwein, Robert E. Schapire, Yoram Singer posted to support-vector-machine by MarcoAlvarez on 2009-04-28 21:19:35 as along with 2 people keerthi sdvillal
	A comparison of methods for multiclass support vector machines [My Copy] Neural Networks, IEEE Transactions on, Vol. 13, No. 2. (2002), pp. 415-425. by Chih-Wei Hsu, Chih-Jen Lin posted to support-vector-machine by MarcoAlvarez on 2009-04-28 21:17:40 as along with 6 people db344 Sinapsi eddymier ling chiahuey doubleshow
	Structure-based function prediction: approaches and applications [My Copy] Brief Funct Genomic Proteomic, Vol. 7, No. 4. (1 July 2008), pp. 291-302. by Pier F. Gherardini, Manuela Helmer-Citterich posted to protein-function by MarcoAlvarez on 2009-04-28 07:29:33 as along with 5 people sgoetz flbarroso dgront jameswasmuth pansapiens
	Iterations of an Open-Source 3D Game Engine: Multiplayer Environments for Learners [My Copy] In Meaningful Play (2008) by Brett Shelton, Marco A. Alvarez, Michael Capell, Chad Coats, Jon Scoresby, Tim Stowell posted to 3d-games by MarcoAlvarez on 2009-04-26 04:47:09 as
	Kipu: Um Simulador de Redes Neurais Ontogênicas Orientado a Objetos [My Copy] In IV Brazilian Symposium on Neural Networks (SBRN) (1997) by Ernesto Cuadros, Marco A. Alvarez, André de Carvalho posted to neural-networks by MarcoAlvarez on 2009-04-24 18:43:02 as
	Máquinas de Vetores de Suporte Aplicadas à Classificação de Defeitos em Couro Bovino [My Copy] In III WVC - Workshop de Visão Computacional (2007) by Ricardo Rodrigues, Roberto Viana, André Pasquali, Marco A. Alvarez, Hemerson Pistori posted to support-vector-machine by MarcoAlvarez on 2009-04-24 01:59:16 as
	Multi-Thread Object Oriented Simulator of Ontogenic Neural Networks [My Copy] In 2nd International Conference on Computational Intelligence and Multimedia Applications (1998), pp. 276-281. by Ernesto Cuadros, Marco A. Alvarez, André de Carvalho posted to neural-networks by MarcoAlvarez on 2009-04-24 01:43:58 as
	Simulador Multi-threads de Redes Neurais Ontogênicas Orientado a Objetos [My Copy] No. 59. (1997) by Ernesto Cuadros, Marco A. Alvarez, André de Carvalho posted to neural-networks by MarcoAlvarez on 2009-04-24 00:05:10 as
	A Machine Learning Approach for One-Stop Learning [My Copy] In Data Mining and Knowledge Discovery Technologies (2008), pp. 333-358. by Marco A. Alvarez, Seungjin Lim edited by David Taniar posted to no-tag by MarcoAlvarez on 2009-04-23 20:17:16 as
	Automated discovery of 3D motifs for protein function annotation [My Copy] Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 723-730. by Benjamin J. Polacco, Patricia C. Babbitt posted to protein-function protein-structure by MarcoAlvarez on 2009-04-23 19:51:04 as along with 3 people and 2 groups marcius eweaver rabio BioinfoCIPF SGU-CIPF
	A new method to measure the semantic similarity of GO terms [My Copy] Bioinformatics, Vol. 23, No. 10. (15 May 2007), pp. 1274-1281. by James Z. Wang, Zhidian Du, Rapeeporn Payattakool, Philip S. Yu, Chin-Fu Chen posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-04-23 19:48:01 as along with 14 people anthropomorphism mlangill roys yas paszkows guhjy jfr grahamc iris_2001 macavity1g florianleitner zwang sgoetz mz2
	A new measure for functional similarity of gene products based on Gene Ontology [My Copy] BMC Bioinformatics, Vol. 7 (15 June 2006), 302. by Andreas Schlicker, Francisco S. Domingues, Jorg Rahnenfuhrer, Thomas Lengauer posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-04-23 19:47:14 as along with 8 people and 1 group stefanorb sgoetz bsamal yas CitoJam gaudan iris_2001 macavity1g T_lab
	Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation [My Copy] Bioinformatics, Vol. 19, No. 10. (1 July 2003), pp. 1275-1283. by P. W. Lord, R. D. Stevens, A. Brass, C. A. Goble posted to gene-ontology semantic-similarity by MarcoAlvarez on 2009-04-23 19:45:21 as along with 12 people and 2 groups mjbell colmryan cerca operon pengchy j3xucite CitoJam ejmeij josemblazquez sgoetz roys penpen926 ilps LanguageModeling
	Get ready to GO! A biologist's guide to the Gene Ontology. [My Copy] Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 298-304. by J. Lomax posted to gene-ontology by MarcoAlvarez on 2009-04-23 19:43:02 as along with 3 people and 2 groups svozil hubcite irenas Bioinformatics dbk-lab
	Automated protein function prediction--the genomic challenge. [My Copy] Briefings in bioinformatics, Vol. 7, No. 3. (23 September 2006), pp. 225-242. by I. Friedberg posted to protein-function by MarcoAlvarez on 2009-04-23 19:41:46 as along with 12 people and 3 groups michaelbarton kiekyon Keywan idoerg shung tjimenez yas marcius j3xucite cdallett sgoetz bootsy T_lab BioinfoCIPF SGU-CIPF
	Computational protein function prediction: Are we making progress? [My Copy] Cell Mol Life Sci (5 July 2007) by A Godzik, M Jambon, I Friedberg posted to protein-function by MarcoAlvarez on 2009-04-23 19:39:11 as along with 7 people kiekyon sgoetz aalibes tjimenez wnpx Jporci nklee

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semantic-similarity	43
clustering	30
computing-education	28
gene-ontology	25
image-annotation	20
support-vector-machine	20
data-streams	19
graph-kernel	15
protein-function	14
sub-cellular-location	12
wordnet	12
web-search	10
text-classification	8
computer-vision-education	6
graph-matching	6
neural-networks	6
protein-structure	6
agents	5
boosting	5
classification	5
kernel-density-estimation	5
news-mining	5
nonparametric	5
outer-membrane-proteins	5
web	5
distributed-clustering	4
kernel-methods	4
local-descriptors	4
object-detection	4
object-recognition	4
self-organization	4
3d-games	3
engineering-education	3
image-retrieval	3
image-segmentation	3
k-means	3
line-simplification	3
relevance-vector-machine	3
distributed-data-mining	2
face-detection	2
hidden-markov-models	2
information-retrieval	2
machine-learning	2
one-stop-learning	2
transcription-factor	2
academia	1
accreditation	1
bioinformatics	1
bologna-process	1
chemoinformatics	1
computer-theory	1
core-sets	1
data-mining	1
density-estimation	1
fast-gauss-transform	1
feature-selection	1
gene-prediction	1
information-systems	1
nearest-neighbor	1
p2p	1
pfam	1
research-stats	1
software-engineering	1
text-retrieval	1
tf-idf	1
uniprot	1
word-sense-disambiguation	1

MarcoAlvarez's library 285 articles Export

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