Martin8223's library 31 articles Export

	The association between a negatively charged ligand and the electronegative binding pocket of its receptor [My Copy] Biopolymers, Vol. 63, No. 4. (2002), pp. 247-260. by Hung-Chung Huang, James M. Briggs posted to no-tag by Martin8223 on 2009-10-15 14:58:22 as along with 1 group AG-Noe
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted to no-tag by Martin8223 on 2009-08-19 14:23:32 as along with 45 people and 5 groups trishul krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac tji higueruelo boris_aguilar sebk timg References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp beta
	The Poisson-Boltzmann equation for biomolecular electrostatics: a tool for structural biology. [My Copy] Journal of molecular recognition : JMR, Vol. 15, No. 6. (c 2002), pp. 377-392. by F. Fogolari, A. Brigo, H. Molinari posted to no-tag by Martin8223 on 2009-08-19 10:59:44 as along with 3 people flbarroso dmitry_s_yershov stephenbond
	PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W665-667. by Todd J. Dolinsky, Jens E. Nielsen, J. Andrew Mccammon, Nathan A. Baker posted to no-tag by Martin8223 on 2009-08-19 10:43:22 as along with 3 people and 1 group flbarroso ssomani mschofie structure-bii
	Very fast empirical prediction and rationalization of protein pK_a values [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 4. (1 December 2005), pp. 704-721. by Hui Li, Andrew D. Robertson, Jan H. Jensen posted to no-tag by Martin8223 on 2009-08-19 10:42:02 as along with 9 people and 1 group flbarroso franklu310 RamuAnandakrishnan gisle bicko sim82 barry sunhwan mschofie Bioinformatics
	Illustration of transition path theory on a collection of simple examples. [My Copy] The Journal of chemical physics, Vol. 125, No. 8. (28 August 2006) by P. Metzner, C. Schütte, E. Vanden-Eijnden posted to no-tag by Martin8223 on 2009-08-18 16:37:50 as along with 1 person doktornoe
	Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian dynamics program [My Copy] Computer Physics Communications, Vol. 62, No. 2-3. (1991) by Malcolm E. Davis, Jeffry D. Madura, Brock A. Luty, J. Andrew Mccammon posted to no-tag by Martin8223 on 2009-08-18 15:53:35 as
	Miniature endplate current rise times less than 100 microseconds from improved dual recordings can be modeled with passive acetylcholine diffusion from a synaptic vesicle [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 12. (11 June 1996), pp. 5747-5752. by J. R. Stiles, D. Van Helden, T. M. Bartol, E. E. Salpeter, M. M. Salpeter posted to no-tag by Martin8223 on 2009-08-18 15:30:49 as
	Simulation of the diffusional association of barnase and barstar [My Copy] Vol. 72, No. 5. (1 May 1997), pp. 1917-1929. by R. R. Gabdoulline, R. C. Wade posted to no-tag by Martin8223 on 2009-08-18 15:00:50 as along with 1 person choonpeng
	Electrostatics of nanosystems: Application to microtubules and the ribosome [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 18. (28 August 2001), pp. 10037-10041. by Nathan A. Baker, David Sept, Simpson Joseph, Michael J. Holst, J. Andrew Mccammon posted to no-tag by Martin8223 on 2009-08-07 12:54:27 as along with 7 people and 1 group nickolay ras flbarroso ssomani gane5h qwermish mschofie structure-bii
	Transition Path Theory for Markov Processes [My Copy] (2007) by Philipp Metzner posted to no-tag by Martin8223 on 2009-08-04 14:35:53 as
	Brownian dynamics simulation of diffusion-influenced bimolecular reactions [My Copy] The Journal of Chemical Physics, Vol. 80, No. 4. (1984), pp. 1517-1524. by Scott H. Northrup, Stuart A. Allison, Andrew J. Mccammon posted to no-tag by Martin8223 on 2009-02-05 13:06:55 as along with 3 people choonpeng stephenbond barry
	Passage Times for Markov Chains [My Copy] (1992) by R. Syski posted to no-tag by Martin8223 on 2008-06-16 18:42:38 as
	Transition Path Theory for Markov Jump Processes [My Copy] by Philipp Metzner, Christof Schütte, Eric Vanden-Eijnden posted to no-tag by Martin8223 on 2008-06-12 15:27:28 as
	Versuch einer mathematischen Theorie der Koagulationskinetik kolloider Lösungen [My Copy] Z. Phys. Chem., Vol. 92 (1917), pp. 129-168. by M. Smoluchowksi posted to no-tag by Martin8223 on 2008-05-09 10:32:41 as along with 1 person and 1 group sobolevnrm baker-group
	Brownian dynamics with hydrodynamic interactions [My Copy] The Journal of Chemical Physics, Vol. 69, No. 4. (1978), pp. 1352-1360. by Donald L. Ermak, J. A. Mccammon posted to no-tag by Martin8223 on 2008-05-09 10:27:19 as along with 2 people matthewhflamm stephenbond
	Illustration of transition path theory on a collection of simple examples [My Copy] The Journal of Chemical Physics, Vol. 125, No. 8. (2006) by Philipp Metzner, Christof Schütte, Eric V. Eijnden posted to no-tag by Martin8223 on 2008-05-09 10:23:16 as
	Computer simulation of protein-protein association kinetics: acetylcholinesterase-fasciculin. [My Copy] J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 149-162. by A. H. Elcock, R. R. Gabdoulline, R. C. Wade, J. A. McCammon posted to no-tag by Martin8223 on 2008-05-09 10:08:59 as along with 3 people and 2 groups dfgreen barry mikaellund structural_bioinformatics Bioinformatics
	Brownian Dynamics Simulation of Protein-Protein Diffusional Encounter [My Copy] Methods, Vol. 14, No. 3. (March 1998), pp. 329-341. by Razif R. Gabdoulline, Rebecca C. Wade posted to no-tag by Martin8223 on 2008-05-06 14:28:59 as along with 2 people and 2 groups m_j barry structural_bioinformatics Bioinformatics
	Molecular Modeling and Simulation [My Copy] Vol. 21 (2002) by Tamar Schlick posted to no-tag by Martin8223 on 2008-05-06 14:20:07 as
	Diffusional Encounter of Barnase and Barstar [My Copy] Biophys. J., Vol. 90, No. 6. (15 March 2006), pp. 1913-1924. by Alexander Spaar, Christian Dammer, Razif R. Gabdoulline, Rebecca C. Wade, Volkhard Helms posted to no-tag by Martin8223 on 2008-05-06 14:15:45 as along with 2 people barry mikaellund
	PURIFICATION AND CRYSTALLIZATION OF A DIMERIC FORM OF ACETYLCHOLINESTERASE FROM TORPEDO-CALIFORNICA SUBSEQUENT TO SOLUBILIZATION WITH PHOSPHATIDYLINOSITOL-SPECIFIC PHOSPHOLIPASE-C [My Copy] Journal of Molecular Biology, Vol. 203, No. 3. (5 October 1988), pp. 821-822. by J. L. Sussman, M. Harel, F. Frolow, et al.L. Varon, L. Toker, A. H. Futerman, I. Silman posted to no-tag by Martin8223 on 2008-04-23 10:16:28 as
	Implicit solvent models [My Copy] Biophysical Chemistry, Vol. 78, No. 1-2. (5 April 1999), pp. 1-20. by Benoit Roux, Thomas Simonson posted to no-tag by Martin8223 on 2008-04-22 13:01:21 as along with 3 people dmitry_s_yershov stephenbond qwermish
	Protein-protein association: investigation of factors influencing association rates by Brownian dynamics simulations [My Copy] Journal of Molecular Biology, Vol. 306, No. 5. (9 March 2001), pp. 1139-1155. by Razif R. Gabdoulline, Rebecca C. Wade posted to no-tag by Martin8223 on 2008-04-21 16:49:44 as along with 2 people mikaellund flbarroso
	Effective Born radii in the generalized Born approximation: the importance of being perfect. [My Copy] J Comput Chem, Vol. 23, No. 14. (15 November 2002), pp. 1297-1304. by A. Onufriev, D. A. Case, D. Bashford posted to no-tag by Martin8223 on 2008-04-21 16:37:55 as along with 3 people boris_aguilar Lombardo_7 ttjoseph
	Semianalytical treatment of solvation for molecular mechanics and dynamics [My Copy] JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, Vol. 112, No. 16. (1990), pp. 6127-6129. by Clark W. Still, Anna Tempczyk, Ronald C. Hawley, Thomas Hendrickson posted to no-tag by Martin8223 on 2008-04-21 16:34:57 as
	Effective Charges for Macromolecules in Solvent [My Copy] J. Phys. Chem., Vol. 100, No. 9. (29 February 1996), pp. 3868-3878. by R. R. Gabdoulline, R. C. Wade posted to no-tag by Martin8223 on 2008-04-21 16:29:48 as along with 1 person mikaellund
	Atomistic simulations of competition between substrates binding to an enzyme. [My Copy] Biophysical journal, Vol. 82, No. 5. (May 2002), pp. 2326-2332. by A. H. Elcock posted to no-tag by Martin8223 on 2008-04-09 14:00:31 as along with 2 people ras ocs
	The self-organizing properties of squid reflectin protein [My Copy] Nat Mater, Vol. 6, No. 7. (July 2007), pp. 533-538. by Ryan M. Kramer, Wendy J. Crookes-Goodson, Rajesh R. Naik posted to no-tag by Martin8223 on 2007-07-03 15:12:55 as along with 1 person and 1 group mkgupta AG-Noe
	Molecular-dynamics with coupling to an external bath [My Copy] J. Chem. Phys., Vol. 81 (1984), pp. 3684-3690. by H. J. C. Berendsen, J. P. M. Postma, W. F. Vangunsteren, A. Dinola, J. R. Haak posted to bibtex-import by Martin8223 on 2007-07-02 11:29:57 as along with 1 group AG-Noe
	Essential dynamics on proteins [My Copy] Proteins, Vol. 17 (1993) by A. Amadei, A. Linssen, H. Berendsen posted to bibtex-import by Martin8223 on 2007-07-02 11:29:57 as along with 1 group AG-Noe

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