Mehlhorn's library 36 articles Export

	Implementation von iterativen Algorithmen zur Motivvorhersage mit Centroiden. [My Copy] (December 2008) by Hendrik Mehlhorn edited by Ivo Grosse, Martin Gleditzsch posted to weight tfbs tf site sampler pwm position motif matrix iterative gibbs em centroid bayes algortihm by Mehlhorn on 2009-10-28 16:39:59 as
	The value of prior knowledge in discovering motifs with MEME. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 3 (1995), pp. 21-29. by T. L. Bailey, C. Elkan posted to motif meme em by Mehlhorn on 2009-10-28 16:32:14 as along with 3 people wowalz AaronDarling noano
	Use of the 'Perceptron' algorithm to distinguish translational initiation sites in E. coli. [My Copy] Nucleic acids research, Vol. 10, No. 9. (11 May 1982), pp. 2997-3011. by G. D. Stormo, T. D. Schneider, L. Gold, A. Ehrenfeucht posted to weight translation site pwm position matrix initiation by Mehlhorn on 2009-10-28 16:17:32 as along with 1 person dquest
	REDfly: a Regulatory Element Database for Drosophila. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 3. (February 2006), pp. 381-383. by S. M. Gallo, L. Li, Z. Hu, M. S. Halfon posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	PERFILS: a program for the quantitative treatment of footprinting data. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 9, No. 5. (October 1993), pp. 607-610. by X. Salas, J. Portugal posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 5. (March 2006), pp. 637-640. by S. B. Montgomery, O. L. Griffith, M. C. Sleumer, et al.C. M. Bergman, M. Bilenky, E. D. Pleasance, Y. Prychyna, X. Zhang, S. J. Jones posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Efficient estimation of graphlet frequency distributions in protein-protein interaction networks. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 8. (April 2006), pp. 974-980. by N. Przulj, D. G. Corneil, I. Jurisica posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Analysis of internal loops within the RNA secondary structure in almost quadratic time. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 11. (June 2006), pp. 1317-1324. by A. Y. Ogurtsov, S. A. Shabalina, A. S. Kondrashov, M. A. Roytberg posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data [My Copy] Bioinformatics, Vol. 25, No. 14. (July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Probabilistic representation of gene regulatory networks [My Copy] Bioinformatics, Vol. 20, No. 14. (September 2004), pp. 2258-2269. by Linyong Mao, Haluk Resat posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Putative promoter regions of miRNA genes involved in evolutionarily conserved regulatory systems among vertebrates [My Copy] Bioinformatics, Vol. 24, No. 3. (February 2008), pp. 303-308. by Shuji Fujita, Hideo Iba posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins. [My Copy] Bioinformatics (Oxford, England), Vol. 15, No. 7-8. (1999), pp. 687-703. by M. P. Ponomarenko, J. V. Ponomarenko, A. S. Frolov, et al.N. L. Podkolodny, L. K. Savinkova, N. A. Kolchanov, G. C. Overton posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Accuracy improvement for identifying translation initiation sites in microbial genomes [My Copy] Bioinformatics, Vol. 20, No. 18. (December 2004), pp. 3308-3317. by Huai Q. Zhu, Gang Q. Hu, Zheng Q. Ouyang, Jin Wang, Zhen S. She posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Predicting the in vivo signature of human gene regulatory sequences [My Copy] Bioinformatics, Vol. 21, No. suppl_1. (June 2005), pp. i338-343. by William S. Noble, Scott Kuehn, Robert Thurman, Man Yu, John Stamatoyannopoulos posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Fitting a mixture model by expectation maximization to discover motifs in biopolymers. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 2 (1994), pp. 28-36. by T. L. Bailey, C. Elkan posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	A sequential Monte Carlo EM approach to the transcription factor binding site identification problem [My Copy] Bioinformatics, Vol. 23, No. 11. (June 2007), pp. 1313-1320. by Edmund S. Jackson, William J. Fitzgerald posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Penalized and weighted K-means for clustering with scattered objects and prior information in high-throughput biological data [My Copy] Bioinformatics, Vol. 23, No. 17. (September 2007), pp. 2247-2255. by George C. Tseng posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Hamming-Clustering method for signals prediction in 5' and 3' regions of eukaryotic genes [My Copy] Comput. Appl. Biosci., Vol. 12, No. 5. (October 1996), pp. 399-404. by L. Milanesi, M. Muselli, P. Arrigo posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Alignments anchored on genomic landmarks can aid in the identification of regulatory elements [My Copy] Bioinformatics, Vol. 21, No. suppl_1. (June 2005), pp. i440-448. by Kannan Tharakaraman, Leonardo M. Ramirez, Sergey Sheetlin, David Landsman, John L. Spouge posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Adding sequence context to a Markov background model improves the identification of regulatory elements [My Copy] Bioinformatics, Vol. 22, No. 23. (December 2006), pp. 2870-2875. by Nak K. Kim, Kannan Tharakaraman, John L. Spouge posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	Unsupervised learning of multiple motifs in biopolymers using expectation maximization [My Copy] Machine Learning, Vol. 21, No. 1. (October 1995), pp. 51-80. by Timothy L. Bailey, Charles Elkan posted to file-import-09-10-23 by Mehlhorn on 2009-10-23 13:15:12 as
	A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling [My Copy] Bioinformatics, Vol. 17, No. 12. (1 December 2001), pp. 1113-1122. by Gert Thijs, Magali Lescot, Kathleen Marchal, et al.Stephane Rombauts, Bart De Moor, Pierre Rouze, Yves Moreau posted to background markov model order by Mehlhorn on 2008-12-09 08:24:28 as along with 7 people lusk raylim lyongu dquest natstreet nklee xili03
	A sequential Monte Carlo EM approach to the transcription factor binding site identification problem [My Copy] Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1313-1320. by Edmund S. Jackson, William J. Fitzgerald posted to em stochastic by Mehlhorn on 2008-12-09 02:52:08 as along with 2 people hendrik85 cjeans
	Identification of transcription factor binding sites with variable-order Bayesian networks [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2657-2666. by I. Ben-Gal, A. Shani, A. Gohr, et al.J. Grau, S. Arviv, A. Shmilovici, S. Posch, I. Grosse posted to bayes markov order by Mehlhorn on 2008-12-08 19:48:19 as along with 4 people ggallone mgledi lyongu nuin
	Modeling dependencies in protein-dna binding sites [My Copy] (2003), pp. 28-37. by Yoseph Barash, Gal Elidan, Nir Friedman, Tommy Kaplan posted to markov order by Mehlhorn on 2008-12-08 19:46:11 as
	TRANSFAC: a database on transcription factors and their DNA binding sites [My Copy] Nucl. Acids Res., Vol. 24, No. 1. (1 January 1996), pp. 238-241. by E. Wingender, P. Dietze, H. Karas, R. Knuppel posted to tf tfbs transfac by Mehlhorn on 2008-12-08 17:45:07 as along with 4 people and 1 group tonamswish ea indigoviolet dquest EisenLab
	WebLogo: a sequence logo generator. [My Copy] Genome research, Vol. 14, No. 6. (1 June 2004), pp. 1188-1190. by Gavin E. Crooks, Gary Hon, John-Marc M. Chandonia, Steven E. Brenner posted to dna-logo by Mehlhorn on 2008-12-08 17:35:43 as along with 15 people and 2 groups daforerog ramonvidal gwallau ivankel dsmueller GustavoLacerda rpetrenko calderonv hplatero dfgreen analogAI indigoviolet xiaobeizhao sobolevnrm yevishere EisenLab baker-group
	Penalized and weighted K-means for clustering with scattered objects and prior information in high-throughput biological data [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2247-2255. by George C. Tseng posted to k-means by Mehlhorn on 2008-12-08 17:21:19 as along with 5 people hendrik85 guhjy jfr rdiaz shigepong
	Decoding human regulatory circuits. [My Copy] Genome Res, Vol. 14, No. 10A. (October 2004), pp. 1967-1974. by W. Thompson, M. J. Palumbo, W. W. Wasserman, J. S. Liu, C. E. Lawrence posted to gibbs recursive sampler by Mehlhorn on 2008-12-08 17:19:37 as along with 1 person and 1 group indigoviolet EisenLab
	Gibbs Recursive Sampler: finding transcription factor binding sites [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3580-3585. by William Thompson, Eric C. Rouchka, Charles E. Lawrence posted to gibbs recursive sampler by Mehlhorn on 2008-12-08 17:07:36 as along with 8 people Dulce wowalz jmartin49 lyongu dquest daniel_quest johncumbers xiaobeizhao
	Markovian structures in biological sequence alignments [My Copy] Journal of the American Statistical Association, Vol. 94 (1999), pp. 1-15. by Jun S. Liu, Andrew F. Neuwald, Charles E. Lawrence posted to model propagation recursive by Mehlhorn on 2008-12-08 17:05:59 as
	Multiple organism gene finding by collapsed gibbs sampling [My Copy] In RECOMB '04: Proceedings of the eighth annual international conference on Resaerch in computational molecular biology (2004), pp. 187-193. by Sourav Chatterji, Lior Pachter posted to collapsed gibbs sampler by Mehlhorn on 2008-12-08 17:02:45 as
	Multiple sequence alignment by parallel simulated annealing [My Copy] Comput. Appl. Biosci., Vol. 9, No. 3. (1 June 1993), pp. 267-273. by Masato Ishikawa, Tomoyuki Toya, Masaki Hoshida, Katsumi Nitta, Atushi Ogiwara, Minoru Kanehisa posted to alignment annealing multiple sequence simulated by Mehlhorn on 2008-12-08 16:56:35 as
	Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. [My Copy] Science (New York, N.Y.), Vol. 262, No. 5131. (8 October 1993), pp. 208-214. by C. E. Lawrence, S. F. Altschul, M. S. Boguski, J. S. Liu, A. F. Neuwald, J. C. Wootton posted to gibbs sampler by Mehlhorn on 2008-12-08 16:46:03 as along with 10 people isimpson rsaito treangen dquest AaronDarling johncumbers jguinney xili03 seitentaisei wenhan
	An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences [My Copy] Proteins: Structure, Function, and Genetics, Vol. 7, No. 1. (1990), pp. 41-51. by Charles E. Lawrence, Andrew A. Reilly posted to em motif by Mehlhorn on 2008-12-08 16:42:56 as along with 2 people RamuAnandakrishnan wenhan
	A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction [My Copy] Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1718-1727. by Lee A. Newberg, William A. Thompson, Sean Conlan, Thomas M. Smith, Lee A. McCue, Charles E. Lawrence posted to centroid gibbs sampler by Mehlhorn on 2008-12-08 16:35:01 as along with 7 people and 1 group vingron operon Dulce dpollard cjeans sconlan siebert EisenLab

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file-import-09-10-23	18
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pwm	2
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annealing	1
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Mehlhorn's library 36 articles Export

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