Neeperando's alignment [31 articles] Export

Recent papers added to Neeperando's library classified by the tag alignment. You can also see everyone's alignment.

	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to alignment thesis by Neeperando on 2009-06-02 18:35:02 as along with 77 people and 6 groups VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	PipMaker---A Web Server for Aligning Two Genomic DNA Sequences [My Copy] Genome Res., Vol. 10, No. 4. (1 April 2000), pp. 577-586. by Scott Schwartz, Zheng Zhang, Kelly A. Frazer, et al.Arian Smit, Cathy Riemer, John Bouck, Richard Gibbs, Ross Hardison, Webb Miller posted to alignment thesis by Neeperando on 2009-05-19 00:03:34 as along with 4 people aprasad michC adijr wenhan
	AVID: A Global Alignment Program [My Copy] Genome Research, Vol. 13, No. 1. (1 January 2003), pp. 97-102. by Nick Bray, Inna Dubchak, Lior Pachter posted to alignment thesis by Neeperando on 2009-05-18 23:41:47 as along with 5 people and 1 group n00c mhiromi indigoviolet adijr yoanjacquemin EisenLab
	Multiple whole-genome alignments without a reference organism [My Copy] Genome Research, Vol. 19, No. 4. (28 April 2009), pp. 682-689. by Inna Dubchak, Alexander Poliakov, Andrey Kislyuk, Michael Brudno posted to alignment synteny by Neeperando on 2009-04-02 14:04:44 as along with 12 people fstrozzi GustavoLacerda michaelbarton mlangill dakelley xwbcn zwang nyyu djkt semrich azazello mhamada
	PASS: a program to align short sequences [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 967-968. by Davide Campagna, Alessandro Albiero, Alessandra Bilardi, et al.Elisa Caniato, Claudio Forcato, Svetlin Manavski, Nicola Vitulo, Giorgio Valle posted to alignment read short by Neeperando on 2009-03-27 18:43:47 as along with 19 people and 1 group cthachuk hzoltan seb1 bozdagd adijr heliopais darian maren n00c nuin skembel cassj helminth_lab rschulz guhjy natstreet druvus renatomilani WanderingAengus iSEEM
	Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs. [My Copy] Genome research, Vol. 18, No. 11. (10 November 2008), pp. 1814-1828. by Benedict Paten, Javier Herrero, Kathryn Beal, Stephen Fitzgerald, Ewan Birney posted to alignment multiple by Neeperando on 2008-11-17 20:35:43 as along with 8 people gdb mhamada natstreet druvus davfre rschulz treangen gjuggler
	Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems. [My Copy] Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1546-1556. by C. Grasso, C. Lee posted to alignment graph partial_order by Neeperando on 2008-11-12 16:55:04 as along with 4 people BioNica scis0000001 treangen AbnerCYH
	Multiple sequence alignment using partial order graphs [My Copy] Bioinformatics, Vol. 18, No. 3. (1 March 2002), pp. 452-464. by Christopher Lee, Catherine Grasso, Mark F. Sharlow posted to alignment graph synteny thesis by Neeperando on 2008-11-12 16:53:54 as along with 9 people and 3 groups pimmy BioNica treangen ana Cortel AbnerCYH azazello wenhan gjuggler structural_bioinformatics Bioinformatics MBLAB
	The whole alignment and nothing but the alignment: the problem of spurious alignment flanks. [My Copy] Nucleic acids research (16 September 2008) by Martin C C. Frith, Yonil Park, Sergey L L. Sheetlin, John L L. Spouge posted to alignment validation by Neeperando on 2008-10-13 16:00:25 as along with 4 people and 1 group maximilianh cisevol sebastien_vigneau nuin BergmanLab
	Grammar-based distance in progressive multiple sequence alignment [My Copy] BMC Bioinformatics, Vol. 9 (10 July 2008), 306. by David J. Russell, Hasan H. Otu, Khalid Sayood posted to alignment distance grammar by Neeperando on 2008-07-14 15:36:31 as along with 1 person nuin
	Database indexing for production MegaBLAST searches. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008), pp. 1757-1764. by Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer posted to alignment by Neeperando on 2008-06-23 15:46:24 as along with 5 people maria_hauser natstreet druvus jdelcampo APRegier
	Memory-efficient dynamic programming backtrace and pairwise local sequence alignment [My Copy] Bioinformatics (16 June 2008), btn308. by Lee A. Newberg posted to alignment dynamic programming by Neeperando on 2008-06-17 14:58:26 as along with 1 person kittipat
	Whole-genome alignments and polytopes for comparative genomics [My Copy] PhD Thesis (2006) by C. Dewey posted to alignment comparative genome scaffolding thesis by Neeperando on 2008-06-16 18:31:29 as
	Measuring Global Credibility with Application to Local Sequence Alignment [My Copy] PLoS Comput Biol, Vol. 4, No. 5. (May 2008) by Bobbie, Lee A. Mccue, Charles E. Lawrence posted to alignment by Neeperando on 2008-05-28 15:39:51 as
	Glocal alignment: finding rearrangements during alignment. [My Copy] Bioinformatics, Vol. 19 Suppl 1 (2003) by M. Brudno, S. Malde, A. Poliakov, et al.C. B. Do, O. Couronne, I. Dubchak, S. Batzoglou posted to alignment thesis by Neeperando on 2008-05-26 17:48:28 as along with 1 person sujaikumar
	Aligning multiple whole genomes with Mercator and MAVID. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 395 (2007), pp. 221-236. by C. N. Dewey posted to alignment thesis by Neeperando on 2008-05-20 21:58:23 as
	R-Coffee: a method for multiple alignment of non-coding RNA. [My Copy] Nucleic acids research (17 April 2008) by Andreas Wilm, Desmond G G. Higgins, Cédric Notredame posted to alignment by Neeperando on 2008-05-20 17:02:58 as along with 2 people marck urgi
	Multiple whole genome alignments and novel biomedical applications at the VISTA portal. [My Copy] Nucleic Acids Res, Vol. 35, No. Web Server issue. (July 2007) by M. Brudno, A. Poliakov, S. Minovitsky, I. Ratnere, I. Dubchak posted to alignment by Neeperando on 2008-05-19 16:17:29 as along with 3 people treangen guhjy kcrawlik
	LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. [My Copy] Genome Res, Vol. 13, No. 4. (April 2003), pp. 721-731. by M. Brudno, C. B. Do, G. M. Cooper, et al.M. F. Kim, E. Davydov, E. D. Green, A. Sidow, S. Batzoglou, posted to alignment thesis by Neeperando on 2008-05-19 16:17:03 as along with 14 people and 1 group treangen operon balajis dpollard xwbcn dquest adepace hdopazo lusk Garamonfok adijr natstreet nklee kcrawlik EisenLab
	Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements [My Copy] Genome Research, Vol. 14, No. 7. (July 2004), pp. 1394-1403. by Aaron C. E. Darling, Bob Mau, Frederick R. Blattner, Nicole T. Perna posted to alignment thesis by Neeperando on 2008-05-19 16:16:15 as along with 13 people and 2 groups rneches foxpowa APRegier ArtemPankin hpaces bcondon semrich operon catmat AaronDarling azazello mariakmejia druvus Khavkin's lab gatech-compgenomics
	Fast and sensitive multiple alignment of large genomic sequences. [My Copy] BMC bioinformatics, Vol. 4 (23 December 2003) by M. Brudno, M. Chapman, B. Göttgens, S. Batzoglou, B. Morgenstern posted to alignment thesis by Neeperando on 2008-05-19 16:15:26 as
	Automated whole-genome multiple alignment of rat, mouse, and human. [My Copy] Genome Res, Vol. 14, No. 4. (April 2004), pp. 685-692. by M. Brudno, A. Poliakov, A. Salamov, et al.G. M. Cooper, A. Sidow, E. M. Rubin, V. Solovyev, S. Batzoglou, I. Dubchak posted to alignment thesis by Neeperando on 2008-05-19 16:14:40 as along with 1 person balajis
	Aligning multiple genomic sequences with the threaded blockset aligner. [My Copy] Genome research, Vol. 14, No. 4. (April 2004), pp. 708-715. by Mathieu Blanchette, W. James Kent, Cathy Riemer, et al.Laura Elnitski, Arian F. Smit, Krishna M. Roskin, Robert Baertsch, Kate Rosenbloom, Hiram Clawson, Eric D. Green, David Haussler, Webb Miller posted to alignment thesis by Neeperando on 2008-05-19 16:12:55 as along with 13 people and 1 group roys emptyhb nuin aprasad APRegier operon ujh indigoviolet csardas djkt yylin maralena AlexanderPico EisenLab
	Efficient multiple genome alignment [My Copy] Bioinformatics, Vol. 18, No. suppl_1. (1 July 2002), pp. S312-320. by Michael Hohl, Stefan Kurtz, Enno Ohlebusch posted to alignment by Neeperando on 2008-05-19 16:11:58 as along with 1 person treangen
	MAVID: Constrained Ancestral Alignment of Multiple Sequences [My Copy] Genome Research, Vol. 14, No. 4. (1 April 2004), pp. 693-699. by Nicolas Bray, Lior Pachter posted to alignment thesis by Neeperando on 2008-05-19 16:11:15 as along with 5 people nuin pradiptaray treangen operon jmeppley
	Mulan: multiple-sequence local alignment and visualization for studying function and evolution. [My Copy] Genome Res, Vol. 15, No. 1. (January 2005), pp. 184-194. by I. Ovcharenko, G. G. Loots, B. M. Giardine, et al.M. Hou, J. Ma, R. C. Hardison, L. Stubbs, W. Miller posted to alignment by Neeperando on 2008-05-19 16:10:30 as along with 3 people and 2 groups jwortman eckart_bindewald dchughes G4ID Genetics-of-Gambling
	Versatile and open software for comparing large genomes. [My Copy] Genome Biol, Vol. 5, No. 2. (2004) by S. Kurtz, A. Phillippy, A. L. Delcher, et al.M. Smoot, M. Shumway, C. Antonescu, S. L. Salzberg posted to alignment genome thesis whole by Neeperando on 2008-05-19 16:09:37 as along with 9 people pachorip APRegier treangen natstreet druvus adelcher AaronDarling michC yoanjacquemin
	Fast algorithms for large-scale genome alignment and comparison [My Copy] Nucl. Acids Res., Vol. 30, No. 11. (1 June 2002), pp. 2478-2483. by Arthur L. Delcher, Adam Phillippy, Jane Carlton, Steven L. Salzberg posted to alignment genome thesis whole by Neeperando on 2008-05-19 16:07:13 as along with 6 people n00c umit treangen urgi yoanjacquemin bozdagd
	Evolution at the nucleotide level: the problem of multiple whole-genome alignment [My Copy] Hum. Mol. Genet., Vol. 15, No. suppl_1. (15 April 2006), pp. R51-56. by Colin N. Dewey, Lior Pachter posted to alignment genome thesis whole by Neeperando on 2008-05-19 16:06:38 as along with 9 people and 2 groups druvus skembel treangen operon Ayest tny dchughes AaronDarling echinotrix G4ID Genetics-of-Gambling
	A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins. [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Kevin Brick, Elisabetta Pizzi posted to alignment malaria by Neeperando on 2008-05-16 19:43:11 as along with 2 people pinney barriot
	PatMaN: rapid alignment of short sequences to large databases [My Copy] Bioinformatics (2008) by Kay Prufer, Udo Stenzel, Michael Dannemann, Richard E. Green, Michael Lachmann, Janet Kelso posted to alignment read short by Neeperando on 2008-05-13 20:51:05 as

Note: You may cite this page as: http://www.citeulike.org/user/Neeperando/tag/alignment

thesis	98
assembly	55
alignment	31
read	27
short	20
synteny	16
comparative	14
validation	10
genome	9
variation	9
matepair	8
reconstruction	8
analysis	7
structural	7
genomics	6
graph	6
network	6
parallel	6
detection	5
inference	5
malaria	5
pair	5
amos	4
gambiae	4
map	4
scaffolding	4
sequencing	4
breakpoints	3
distributed	3
drosophila	3
human	3
mapping	3
repeat	3
whole	3
copy	2
dna	2
end	2
gene_order	2
grid	2
haplotype	2
homology	2
number	2
paired	2
pyrosequencing	2
review	2
transposon	2
tree	2
chirp	1
clique	1
compilers_textbook	1
condor	1
coverage	1
database	1
distance	1
duplication	1
dynamic	1
filesystem	1
fragment	1
gene_teams	1
grammar	1
hawkeye	1
interval	1
k-partite	1
learning	1
machine	1
mapreduce	1
mass-spectrometry	1
multiple	1
next-gen-sequencing	1
overlap	1
partial_order	1
phylogenetic	1
plasmodium	1
population	1
programming	1
rearrangement	1
reconciliation	1
resequencing	1
segmental	1
snp	1
string	1
viewer	1
workqueue	1

Neeperando's alignment [31 articles] Export

Neeperando's tags