Neeperando's read [27 articles] Export

Recent papers added to Neeperando's library classified by the tag read. You can also see everyone's read.

	Short read fragment assembly of bacterial genomes [My Copy] Genome Research, Vol. 18, No. 2. (1 February 2008), pp. 324-330. by Mark J. Chaisson, Pavel A. Pevzner posted to assembly read short thesis by Neeperando on 2009-05-11 21:39:01 as along with 17 people n00c pachorip APRegier thegoose2 dakelley hpaces idoerg druvus jasontsai acn orzenil azazello GustavoLacerda dandaman caseybrown iris42 tharris
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted to mapping mapreduce parallel read by Neeperando on 2009-04-09 14:45:18 as along with 33 people and 2 groups joshdsullivan cthachuk hzoltan jfr walshtp idonaldson orzenil heliopais dakelley bozdagd agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson rschulz dswan mitko djkt humburg jmeppley coela vagoskar svenrahmann natstreet brianb druvus neils KCL & UCL Bioinformatics Bioinformatics
	PASS: a program to align short sequences [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 967-968. by Davide Campagna, Alessandro Albiero, Alessandra Bilardi, et al.Elisa Caniato, Claudio Forcato, Svetlin Manavski, Nicola Vitulo, Giorgio Valle posted to alignment read short by Neeperando on 2009-03-27 18:43:47 as along with 19 people and 1 group cthachuk hzoltan seb1 bozdagd adijr heliopais darian maren n00c nuin skembel cassj helminth_lab rschulz guhjy natstreet druvus renatomilani WanderingAengus iSEEM
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to dna mapping read short by Neeperando on 2008-10-31 14:13:24 as along with 39 people and 2 groups Julien_Fayolle seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	Aggressive assembly of pyrosequencing reads with mates [My Copy] Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2818-2824. by Jason R. Miller, Arthur L. Delcher, Sergey Koren, et al.Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, Granger Sutton posted to assembly read short thesis by Neeperando on 2008-10-27 13:45:18 as along with 17 people and 2 groups GustavoLacerda n00c APRegier jonilaserson dakelley idoerg orzenil ela503 natstreet druvus azazello acn jasontsai jmeppley cisevol malcook djkt BergmanLab SIMR bioinformatics
	Optimal spliced alignments of short sequence reads [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Ratsch posted to map read short by Neeperando on 2008-08-25 15:08:34 as along with 12 people and 1 group GustavoLacerda darshan n00c natstreet druvus lukaswindhager malcook jmcq nmohelli caseybrown cthachuk Ema SIMR bioinformatics
	ZOOM! Zillions of oligos mapped [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2431-2437. by Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li posted to map read short by Neeperando on 2008-08-25 14:08:24 as along with 20 people hzoltan gbenson bozdagd adijr gdb n00c GeeSharpMinor inesdesantiago GustavoLacerda cthachuk guhjy abizar APRegier natstreet druvus caseybrown djkt wisdom_love umit Stew
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (March 2008), pp. 142-149. by Mihai Pop, Steven L. Salzberg posted to assembly read short thesis by Neeperando on 2008-08-04 21:12:44 as
	Assembling millions of short DNA sequences using SSAKE [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 500-501. by Rene L. Warren, Granger G. Sutton, Steven J. M. Jones, Robert A. Holt posted to assembly read short thesis by Neeperando on 2008-07-31 18:14:48 as along with 13 people katholt jbhiatt jsatkosk AaronDarling floatingpoint idoerg caseybrown druvus natstreet azazello iris42 nmohelli yoonk
	A KNOWLEDGE-BASED APPROACH TO PREDICT INTRAGENIC DELETIONS OR DUPLICATIONS [My Copy] Bioinformatics (21 July 2008), btn370. by Krishna R. Kalari, Thomas L. Casavant, Todd E. Scheetz posted to read short structural variation by Neeperando on 2008-07-24 23:24:34 as along with 3 people ealloza pengchy APRegier
	Real-Time DNA Sequencing Using Detection of Pyrophosphate Release [My Copy] Analytical Biochemistry, Vol. 242, No. 1. (1 November 1996), pp. 84-89. by Mostafa Ronaghi, Samer Karamohamed, Bertil Pettersson, Mathias Uhlén, Pål Nyrén posted to pyrosequencing read sequencing short by Neeperando on 2008-07-17 22:07:40 as along with 2 people daforerog bozdagd
	Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. i32-40. by Iman Hajirasouliha, Fereydoun Hormozdiari, S. Cenk Sahinalp, Inanc Birol posted to assembly read resequencing short by Neeperando on 2008-06-27 14:50:11 as along with 7 people manduca n00c orzenil druvus babakap kittipat reyez
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, Eugenia, Jianxiang Chi, Fengtang Yang, Nigel P. P. Carter, Matthew E. E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted to analysis matepair pair read thesis by Neeperando on 2008-05-30 14:50:54 as along with 22 people and 2 groups torfinnnome jandot n00c jonilaserson jrvalcourt APRegier jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dpollard dchughes AaronDarling rdiaz giovanni jlangdon annacarina07 jfr caseybrown Journal picks EisenLab
	Fine-scale structural variation of the human genome [My Copy] Nature Genetics, Vol. 37, No. 7. (15 May 2005), pp. 727-732. by Eray Tuzun, Andrew J. Sharp, Jeffrey A. Bailey, et al.Rajinder Kaul, Anne V. Morrison, Lisa M. Pertz, Eric Haugen, Hillary Hayden, Donna Albertson, Daniel Pinkel, Maynard V. Olson, Evan E. Eichler posted to analysis matepair pair read thesis by Neeperando on 2008-05-30 14:47:05 as along with 5 people APRegier waszak matthewsuderman bpb pcahan1
	Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer [My Copy] PLoS Comput Biol, Vol. 4, No. 4. (Apr 2008) by Ali Bashir, Stanislav Volik, Colin Collins, Vineet Bafna, Benjamin J. Raphael posted to analysis matepair pair read thesis by Neeperando on 2008-05-28 15:38:06 as
	Extending assembly of short DNA sequences to handle error. [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2942-2944. by W. R. Jeck, J. A. Reinhardt, D. A. Baltrus, et al.M. T. Hickenbotham, V. Magrini, E. R. Mardis, J. L. Dangl, C. D. Jones posted to assembly read short thesis by Neeperando on 2008-05-28 15:35:21 as along with 6 people idoerg floatingpoint natstreet druvus guhjy azazello
	A scaffold analysis tool using mate-pair information in genome sequencing. [My Copy] Journal of biomedicine & biotechnology, Vol. 2008 (2008) by Pan-Gyu G. Kim, Hwan-Gue G. Cho, Kiejung Park posted to assembly pair read thesis validation by Neeperando on 2008-05-19 16:30:45 as along with 2 people dakelley orzenil
	A Tool for Analyzing Mate Pairs in Assemblies (TAMPA) [My Copy] Journal of Computational Biology, Vol. 12, No. 5. (2005), pp. 497-513. by Ian M. Dew, Brian Walenz, Granger Sutton posted to assembly matepair pair read thesis validation by Neeperando on 2008-05-14 17:10:57 as
	PatMaN: rapid alignment of short sequences to large databases [My Copy] Bioinformatics (2008) by Kay Prufer, Udo Stenzel, Michael Dannemann, Richard E. Green, Michael Lachmann, Janet Kelso posted to alignment read short by Neeperando on 2008-05-13 20:51:05 as
	Velvet: algorithms for de novo short read assembly using de Bruijn graphs. [My Copy] Genome research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to assembly read short thesis by Neeperando on 2008-05-01 21:08:02 as along with 41 people and 3 groups vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn druvus natstreet nmohelli stajich farhat iris42 tharris sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to assembly read short thesis by Neeperando on 2008-05-01 21:07:35 as along with 22 people and 1 group n00c carlk jmanning2k APRegier pachorip jonilaserson operon thegoose2 natstreet AaronDarling mhz dakelley druvus stajich azazello hpaces tharris jwhitney iris42 sharpton GustavoLacerda GeeSharpMinor Mycology
	Quality scores and SNP detection in sequencing-by-synthesis systems. [My Copy] Genome research, Vol. 18, No. 5. (22 May 2008), pp. 763-770. by William Brockman, Pablo Alvarez, Sarah Young, et al.Manuel Garber, Georgia Giannoukos, William L. Lee, Carsten Russ, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to read short snp by Neeperando on 2008-05-01 21:07:02 as along with 12 people n00c jonilaserson jsatkosk maren natstreet druvus cap1 caseybrown dbensasson bpb sharpton GustavoLacerda
	De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer [My Copy] Genome Research, Vol. 18, No. 5. (10 May 2008), pp. 802-809. by David Hernandez, Patrice FranÃ§ois, Laurent Farinelli, Magne Ãsterã¥s, Jacques Schrenzel posted to assembly read short thesis by Neeperando on 2008-05-01 21:06:54 as along with 15 people and 4 groups n00c GeeSharpMinor pachorip operon druvus dakelley acn nmohelli GustavoLacerda jmeppley stajich azazello Katje iris42 balicea DeNovoAssembly-SIMR microbiology_nijmegen Mycology gatech-compgenomics
	PLoS ONE: Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies [My Copy] PLoS ONE, Vol. 2, No. 5. (May 2007), e484. by Andreas Sundquist, Mostafa Ronaghi, Haixu Tang, Pavel Pevzner, Serafim Batzoglou1 edited by Alan Christoffels posted to assembly read short by Neeperando on 2008-04-24 22:39:38 as
	An analysis of the feasibility of short read sequencing [My Copy] Nucleic Acids Research, Vol. 33, No. 19. (2005), pp. e171-e171. by Nava Whiteford, Niall Haslam, Gerald Weber, et al.Adam Prugel-Bennett, Jonathan W. Essex, Peter L. Roach, Mark Bradley, Cameron Neylon posted to read short by Neeperando on 2008-04-24 22:18:46 as along with 5 people n00c dullhunk nedwards CameronNeylon niallhaslam
	Comparing Assemblies Using Fragments and Mate-Pairs [My Copy] In WABI '01: Proceedings of the First International Workshop on Algorithms in Bioinformatics (2001), pp. 294-306. by Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton posted to assembly matepair read thesis validation by Neeperando on 2008-04-24 20:00:43 as along with 1 person APRegier
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by Mihai Pop, Steven L. Salzberg posted to assembly read short thesis by Neeperando on 2008-04-24 19:53:13 as along with 36 people Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog n00c ptrobajo orzenil APRegier katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi jfr tharris mariakmejia caseybrown yoonk druvus

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Neeperando's read [27 articles] Export

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