Neeperando's thesis [98 articles] Export

Recent papers added to Neeperando's library classified by the tag thesis. You can also see everyone's thesis.

	Harnessing parallelism in multicore clusters with the all-pairs and wavefront abstractions [My Copy] In HPDC '09: Proceedings of the 18th ACM international symposium on High performance distributed computing (2009), pp. 1-10. by Li Yi, Christopher Moretti, Scott Emrich, Kenneth Judd, Douglas Thain posted to workqueue thesis parallel distributed by Neeperando on 2009-10-23 22:43:32 as along with 1 person and 1 group bbjwerner Software-Architecture
	Patterns of somatic mutation in human cancer genomes [My Copy] Nature, Vol. 446, No. 7132. (08 March 2007), pp. 153-158. by Christopher Greenman, Philip Stephens, Raffaella Smith, et al.Gillian L. Dalgliesh, Christopher Hunter, Graham Bignell, Helen Davies, Jon Teague, Adam Butler, Claire Stevens, Sarah Edkins, Sarah O/'Meara, Imre Vastrik, Esther E. Schmidt, Tim Avis, Syd Barthorpe, Gurpreet Bhamra, Gemma Buck, Bhudipa Choudhury, Jody Clements, Jennifer Cole, Ed Dicks, Simon Forbes, Kris Gray, Kelly Halliday, Rachel Harrison, Katy Hills, Jon Hinton, Andy Jenkinson, David Jones, Andy Menzies, Tatiana Mironenko, Janet Perry, Keiran Raine, Dave Richardson, Rebecca Shepherd, Alexandra Small, Calli Tofts, Jennifer Varian, Tony Webb, Sofie West, Sara Widaa, Andy Yates, Daniel P. Cahill, David N. Louis, Peter Goldstraw, Andrew G. Nicholson, Francis Brasseur, Leendert Looijenga, Barbara L. Weber, Yoke-Eng Chiew, Anna deFazio, Mel F. Greaves, Anthony R. Green, Peter Campbell, Ewan Birney, Douglas F. Easton, Georgia Chenevix-Trench, Min-Han Tan, Sok K. Khoo, Bin T. Teh, Siu T. Yuen, Suet Y. Leung, Richard Wooster, P. Andrew Futreal, Michael R. Stratton posted to thesis by Neeperando on 2009-10-14 02:22:24 as along with 15 people xingxu ssgong dbensasson koller kentsis jfr massivemayhem efge Garamonfok daed Petersarkies ramensky frohike cerami srp33
	Why greed works for shortest common superstring problem [My Copy] Theoretical Computer Science (15 September 2009) by Bin Ma posted to thesis assembly by Neeperando on 2009-10-14 01:45:14 as along with 2 people seb1 n00c
	Mosaik - The Marth Lab [My Copy] posted to assembly comparative thesis by Neeperando on 2009-08-04 16:36:39 as
	Condor and the Grid [My Copy] by Douglas Thain, Todd Tannenbaum, Miron Livny posted to condor distributed grid thesis by Neeperando on 2009-07-30 20:02:53 as
	Chirp: a practical global filesystem for cluster and Grid computing [My Copy] Journal of Grid Computing, Vol. 7, No. 1. (1 March 2009), pp. 51-72. by Douglas Thain, Christopher Moretti, Jeffrey Hemmes posted to chirp distributed filesystem grid thesis by Neeperando on 2009-07-30 19:42:26 as along with 3 people and 1 group thiagomanel aespinosa schamm TELEPAT-ES
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to alignment thesis by Neeperando on 2009-06-02 18:35:02 as along with 77 people and 6 groups VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Malaria Fact Sheet [My Copy] (January 2009) posted to malaria thesis by Neeperando on 2009-06-01 16:55:27 as
	Proposal for the Eight Genomes Cluster for Genus Anopheles [My Copy] (July 2004) by Nora J. Besansky posted to gambiae thesis by Neeperando on 2009-06-01 16:44:13 as
	Speciation Within Anopheles gambiae-- the Glass Is Half Full [My Copy] Science, Vol. 298, No. 5591. (4 October 2002), pp. 115-117. by Della A. Torre, C. Costantini, N. J. Besansky, et al.A. Caccone, V. Petrarca, J. R. Powell, M. Coluzzi posted to gambiae thesis by Neeperando on 2009-06-01 16:06:26 as
	PipMaker---A Web Server for Aligning Two Genomic DNA Sequences [My Copy] Genome Res., Vol. 10, No. 4. (1 April 2000), pp. 577-586. by Scott Schwartz, Zheng Zhang, Kelly A. Frazer, et al.Arian Smit, Cathy Riemer, John Bouck, Richard Gibbs, Ross Hardison, Webb Miller posted to alignment thesis by Neeperando on 2009-05-19 00:03:34 as along with 4 people aprasad michC adijr wenhan
	AVID: A Global Alignment Program [My Copy] Genome Research, Vol. 13, No. 1. (1 January 2003), pp. 97-102. by Nick Bray, Inna Dubchak, Lior Pachter posted to alignment thesis by Neeperando on 2009-05-18 23:41:47 as along with 5 people and 1 group n00c mhiromi indigoviolet adijr yoanjacquemin EisenLab
	Structural variation in the human genome [My Copy] Nature Reviews Genetics, Vol. 7, No. 2. (01 February 2006), pp. 85-97. by Lars Feuk, Andrew R. Carson, Stephen W. Scherer posted to structural thesis variation by Neeperando on 2009-05-14 20:26:58 as along with 25 people and 11 groups ajbattle bertelsen baizhang APRegier xingxu daforerog psique Zephyrus dlobo jandot cgreal balajis bala balicea dchughes tabu darcyduke adepace AaronDarling rdiaz massivemayhem cat_worth jmrivort ccr Lip GEB CGREL structural_bioinformatics Bioinformatics EisenLab SFX-Verde-team-MITLibraries G4ID G-quadruplex Supramolecular DictyosteliumGroup Genetics-of-Gambling
	PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data [My Copy] Genome Biology, Vol. 10, No. 2. (23 February 2009), R23. by Jan O. Korbel, Alexej Abyzov, Xinmeng J. Mu, et al.Nicholas Carriero, Philip Cayting, Zhengdong Zhang, Michael Snyder, Mark B. Gerstein posted to end paired structural thesis variation by Neeperando on 2009-05-14 20:25:01 as along with 11 people orzenil adthrasher jessopher jrvalcourt dakelley APRegier smiddha natstreet djkt poschm druvus
	Figaro: a novel statistical method for vector sequence removal [My Copy] Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 462-467. by James R. White, Michael Roberts, James A. Yorke, Mihai Pop posted to assembly thesis by Neeperando on 2009-05-13 22:03:48 as along with 7 people and 1 group APRegier thegoose2 operon druvus guhjy GustavoLacerda tharris LabDros
	Minimus: a fast, lightweight genome assembler. [My Copy] BMC bioinformatics, Vol. 8 (26 February 2007), 64. by Daniel D. Sommer, Arthur L. Delcher, Steven L. Salzberg, Mihai Pop posted to amos assembly thesis by Neeperando on 2009-05-13 21:40:47 as along with 3 people azazello Thaverkamp eckart_bindewald
	AMOS - A Modular Open-Source Assembler [My Copy] posted to thesis by Neeperando on 2009-05-13 21:35:53 as along with 1 person n00c
	Assembling genomes on large-scale parallel computers [My Copy] Journal of Parallel and Distributed Computing, Vol. In Press, Corrected Proof by A. Kalyanaraman, S. J. Emrich, P. S. Schnable, S. Aluru posted to assembly parallel thesis by Neeperando on 2009-05-12 17:12:34 as along with 1 person GustavoLacerda
	Short read fragment assembly of bacterial genomes [My Copy] Genome Research, Vol. 18, No. 2. (1 February 2008), pp. 324-330. by Mark J. Chaisson, Pavel A. Pevzner posted to assembly read short thesis by Neeperando on 2009-05-11 21:39:01 as along with 17 people n00c pachorip APRegier thegoose2 dakelley hpaces idoerg druvus jasontsai acn orzenil azazello GustavoLacerda dandaman caseybrown iris42 tharris
	Separation of nearly identical repeats in shotgun assemblies using defined nucleotide positions, DNPs [My Copy] Bioinformatics, Vol. 18, No. 3. (1 March 2002), pp. 379-388. by Martti T. Tammi, Erik Arner, Tom Britton, Bjorn Andersson posted to assembly thesis validation by Neeperando on 2009-05-08 20:28:00 as along with 1 person dakelley
	An Eulerian path approach to DNA fragment assembly. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 17. (14 August 2001), pp. 9748-9753. by P. A. Pevzner, H. Tang, M. S. Waterman posted to assembly thesis by Neeperando on 2009-05-07 21:49:57 as along with 14 people and 2 groups aheilbut jengeldk n00c robsyme idoerg dakelley brl A_Olympia briann jmeppley AaronDarling nedwards azazello jwhitney Philosophy_of_Information Blog_and_Wiki_Research
	Pash: Efficient Genome-Scale Sequence Anchoring by Positional Hashing [My Copy] Genome Res., Vol. 14, No. 4. (1 April 2004), pp. 672-678. by Ken J. Kalafus, Andrew R. Jackson, Aleksandar Milosavljevic posted to assembly comparative thesis by Neeperando on 2009-05-06 20:11:38 as along with 1 person yoanjacquemin
	Algorithms on strings, trees, and sequences : computer science and computational biology [My Copy] (15 January 2007) by Dan Gusfield posted to assembly string thesis tree by Neeperando on 2009-05-05 22:07:31 as along with 20 people and 2 groups abergeron n00c stharward enricos Scis0000002 mircea renewang timflutre ujh creswick tijl grzegorz luispedro emranmohdtamil hoangmit thonnardo pool007 nedwards ep161302 reyez Centre de Recherches Interdisciplinaires Pattern-Analysis
	Genome sequence assembly: algorithms and issues [My Copy] Computer In Computer, Vol. 35, No. 7. (2002), pp. 47-54. by M. Pop, S. L. Salzberg, M. Shumway posted to assembly thesis by Neeperando on 2009-04-13 17:32:04 as
	The Sorghum bicolor genome and the diversification of grasses [My Copy] Nature, Vol. 457, No. 7229. (29 January 2009), pp. 551-556. by Andrew H. Paterson, John E. Bowers, Remy Bruggmann, et al.Inna Dubchak, Jane Grimwood, Heidrun Gundlach, Georg Haberer, Uffe Hellsten, Therese Mitros, Alexander Poliakov, Jeremy Schmutz, Manuel Spannagl, Haibao Tang, Xiyin Wang, Thomas Wicker, Arvind K. Bharti, Jarrod Chapman, Alex F. Feltus, Udo Gowik, Igor V. Grigoriev, Eric Lyons, Christopher A. Maher, Mihaela Martis, Apurva Narechania, Robert P. Otillar, Bryan W. Penning, Asaf A. Salamov, Yu Wang, Lifang Zhang, Nicholas C. Carpita, Michael Freeling, Alan R. Gingle, Thomas C. Hash, Beat Keller, Patricia Klein, Stephen Kresovich, Maureen C. Mccann, Ray Ming, Daniel G. Peterson, Mehboob-Ur-Rahman, Doreen Ware, Peter Westhoff, Klaus F. Mayer, Joachim Messing, Daniel S. Rokhsar posted to thesis assembly by Neeperando on 2009-03-30 16:15:18 as along with 3 people natstreet soberhaensli neils
	A Preprocessor for Shotgun Assembly of Large Genomes [My Copy] Journal of Computational Biology, Vol. 11, No. 4. (2004), pp. 734-752. by Michael Roberts, Brian R. Hunt, James A. Yorke, Randall A. Bolanos, Arthur L. Delcher posted to assembly overlap thesis by Neeperando on 2009-03-19 17:35:58 as along with 1 person dakelley
	CAP3: A DNA Sequence Assembly Program [My Copy] Genome Research, Vol. 9, No. 9. (1 September 1999), pp. 868-877. by Xiaoqiu Huang, Anup Madan posted to assembly thesis by Neeperando on 2009-03-17 20:27:17 as along with 5 people nwpuzebra n00c dakelley gpappas dmp
	The Algorithmic of Gene Teams [My Copy] Algorithms in Bioinformatics (2002), pp. 464-476. by Anne Bergeron, Sylvie Corteel, Mathieu Raffinot posted to gene_order gene_teams synteny thesis by Neeperando on 2009-01-22 15:30:31 as
	Detecting Gene Clusters under Evolutionary Constraint in a Large Number of Genomes [My Copy] Bioinformatics (21 January 2009), btp027. by Xu Ling, Xin He, Dong Xin posted to thesis synteny by Neeperando on 2009-01-22 15:16:54 as along with 6 people nuin idoerg malcook druvus djkt grahamc
	A robust framework for detecting structural variations in a genome [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i59-67. by Seunghak Lee, Elango Cheran, Michael Brudno posted to matepair structural thesis variation by Neeperando on 2009-01-16 16:22:55 as along with 10 people matted darian dakelley jonilaserson rdiaz balicea kittipat matthewsuderman raistrick APRegier
	A whole-genome assembly of Drosophila. [My Copy] Science (New York, N.Y.), Vol. 287, No. 5461. (24 March 2000), pp. 2196-2204. by E. W. Myers, G. G. Sutton, A. L. Delcher, et al.I. M. Dew, D. P. Fasulo, M. J. Flanigan, S. A. Kravitz, C. M. Mobarry, K. H. Reinert, K. A. Remington, E. L. Anson, R. A. Bolanos, H. H. Chou, C. M. Jordan, A. L. Halpern, S. Lonardi, E. M. Beasley, R. C. Brandon, L. Chen, P. J. Dunn, Z. Lai, Y. Liang, D. R. Nusskern, M. Zhan, Q. Zhang, X. Zheng, G. M. Rubin, M. D. Adams, J. C. Venter posted to assembly drosophila thesis by Neeperando on 2008-12-09 17:17:20 as along with 8 people and 3 groups dakelley taroleo bluto azazello wenhan tpreeprem yoanjacquemin cisevol MBLAB gatech-compgenomics Drosophila-Genetics-Genomics-2008
	Genome-wide nucleotide-level mammalian ancestor reconstruction [My Copy] Genome Research, Vol. 18, No. 11. (October 2008), pp. 1829-1843. by Benedict Paten, Javier Herrero, Stephen Fitzgerald, et al.Kathryn Beal, Paul Flicek, Ian Holmes, Ewan Birney posted to reconstruction thesis by Neeperando on 2008-12-05 17:10:03 as
	Multiple sequence alignment using partial order graphs [My Copy] Bioinformatics, Vol. 18, No. 3. (1 March 2002), pp. 452-464. by Christopher Lee, Catherine Grasso, Mark F. Sharlow posted to alignment graph synteny thesis by Neeperando on 2008-11-12 16:53:54 as along with 9 people and 3 groups pimmy BioNica treangen ana Cortel AbnerCYH azazello wenhan gjuggler structural_bioinformatics Bioinformatics MBLAB
	Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data. [My Copy] Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4209-4215. by F. Boyer, A. Morgat, L. Labarre, J. Pothier, A. Viari posted to graph synteny thesis by Neeperando on 2008-11-12 16:53:00 as along with 2 people operon alexg
	Syntenator: multiple gene order alignments with a gene-specific scoring function. [My Copy] Algorithms for molecular biology : AMB, Vol. 3 (06 November 2008), 14. by Christian Rödelsperger, Christoph Dieterich posted to detection synteny thesis by Neeperando on 2008-11-10 17:00:25 as along with 5 people and 2 groups avilella treangen maximilianh cisevol druvus Ensembl Compara citations BergmanLab
	Genome-wide nucleotide-level mammalian ancestor reconstruction [My Copy] Genome Research, Vol. 18, No. 11. (10 November 2008), pp. 1829-1843. by Benedict Paten, Javier Herrero, Stephen Fitzgerald, et al.Kathryn Beal, Paul Flicek, Ian Holmes, Ewan Birney posted to reconstruction thesis by Neeperando on 2008-10-31 14:11:43 as along with 6 people gdb ilyashl mhamada rschulz gjuggler bpcusack
	Aggressive assembly of pyrosequencing reads with mates [My Copy] Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2818-2824. by Jason R. Miller, Arthur L. Delcher, Sergey Koren, et al.Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, Granger Sutton posted to assembly read short thesis by Neeperando on 2008-10-27 13:45:18 as along with 17 people and 2 groups GustavoLacerda n00c APRegier jonilaserson dakelley idoerg orzenil ela503 natstreet druvus azazello acn jasontsai jmeppley cisevol malcook djkt BergmanLab SIMR bioinformatics
	The Diploid Genome Sequence of an Individual Human [My Copy] PLoS Biol, Vol. 5, No. 10. (4 September 2007), e254. by Samuel Levy, Granger Sutton, Pauline C. Ng, et al.Lars Feuk, Aaron L. Halpern, Brian P. Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F. Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R. MacDonald, Andy W. Pang, Mary Shago, Timothy B. Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A. Kravitz, Dana A. Busam, Karen Y. Beeson, Tina C. McIntosh, Karin A. Remington, Josep F. Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E. Frazier, Stephen W. Scherer, Robert L. Strausberg, J. Craig Venter posted to genome human thesis by Neeperando on 2008-10-03 18:38:16 as along with 30 people and 1 group n00c jgill pachorip Scis0000002 daforerog jessopher psique dakelley noushin jo_davies frohike adijr operon carlblesius bpb balicea skhadar dullhunk djkt jackjackjjj ramensky massivemayhem jasonbobe PredictER lp2 cabbagezs xingxu hpaces maburkitt nhp Bioinformatics
	An algorithm based on graph theory for the assembly of contigs in physical mapping of DNA. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 10, No. 3. (June 1994), pp. 309-317. by P. Zhang, E. A. Schon, S. G. Fischer, et al.E. Cayanis, J. Weiss, S. Kistler, P. E. Bourne posted to graph interval scaffolding thesis by Neeperando on 2008-09-04 22:40:45 as along with 1 person AbnerCYH
	i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 1. (1 January 2008), pp. 127-128. by C. Simillion, K. Janssens, L. Sterck, Y. Van de Peer posted to detection synteny thesis by Neeperando on 2008-08-25 15:15:41 as
	DAGchainer: a tool for mining segmental genome duplications and synteny [My Copy] Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3643-3646. by Brian J. Haas, Arthur L. Delcher, Jennifer R. Wortman, Steven L. Salzberg posted to detection synteny thesis by Neeperando on 2008-08-25 15:15:00 as along with 3 people parnell druvus treangen
	LineUp: statistical detection of chromosomal homology with application to plant comparative genomics. [My Copy] Genome research, Vol. 13, No. 5. (May 2003), pp. 999-1010. by S. Hampson, A. McLysaght, B. Gaut, P. Baldi posted to detection synteny thesis by Neeperando on 2008-08-25 15:14:17 as along with 2 people and 1 group operon druvus LabDros
	Statistical detection of chromosomal homology using shared-gene density alone. [My Copy] Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1339-1348. by S. E. Hampson, B. S. Gaut, P. Baldi posted to detection synteny thesis by Neeperando on 2008-08-25 15:13:52 as along with 1 person AaronDarling
	SynBlast: Assisting the analysis of conserved synteny information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (24 August 2008), 351. by Jorg Lehmann, Peter Stadler, Sonja Prohaska posted to synteny thesis by Neeperando on 2008-08-25 15:09:55 as along with 6 people and 1 group avilella natstreet druvus maximilianh grahamc nuin Ensembl Compara citations
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (March 2008), pp. 142-149. by Mihai Pop, Steven L. Salzberg posted to assembly read short thesis by Neeperando on 2008-08-04 21:12:44 as
	Assembling millions of short DNA sequences using SSAKE [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 500-501. by Rene L. Warren, Granger G. Sutton, Steven J. M. Jones, Robert A. Holt posted to assembly read short thesis by Neeperando on 2008-07-31 18:14:48 as along with 13 people katholt jbhiatt jsatkosk AaronDarling floatingpoint idoerg caseybrown druvus natstreet azazello iris42 nmohelli yoonk
	Mapping translocation breakpoints by next-generation sequencing. [My Copy] Genome research, Vol. 18, No. 7. (7 July 2008), pp. 1143-1149. by Wei Chen, Vera Kalscheuer, Andreas Tzschach, et al.Corinna Menzel, Reinhard Ullmann, Marcel Holger H. Schulz, Fikret Erdogan, Na Li, Zofia Kijas, Ger Arkesteijn, Isidora Lopez L. Pajares, Margret Goetz-Sothmann, Uwe Heinrich, Imma Rost, Andreas Dufke, Ute Grasshoff, Birgitta Glaeser, Martin Vingron, Hilger H. Ropers posted to breakpoints map next-gen-sequencing thesis by Neeperando on 2008-07-31 15:18:35 as along with 6 people stubrown sameersoi nuin usagi-kirin caseybrown APRegier
	Construction of high-resolution comparative maps in mammals using BAC-end sequences. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 422 (2008), pp. 79-90. by D. M. Larkin, H. A. Lewin posted to comparative map thesis by Neeperando on 2008-07-24 18:12:13 as
	Hawkeye: an interactive visual analytics tool for genome assemblies [My Copy] Genome Biology, Vol. 8, No. 3. (09 March 2007), R34. by Michael Schatz, Adam Phillippy, Ben Shneiderman, Steven Salzberg posted to assembly hawkeye thesis by Neeperando on 2008-07-17 20:38:29 as along with 11 people and 2 groups darian n00c joule Thaverkamp hpaces orzenil GustavoLacerda natstreet druvus stajich azazello Mycology gatech-compgenomics
	The sequence of the human genome. [My Copy] Science (New York, N.Y.), Vol. 291, No. 5507. (16 February 2001), pp. 1304-1351. by J. C. Venter, M. D. Adams, E. W. Myers, et al.P. W. Li, R. J. Mural, G. G. Sutton, H. O. Smith, M. Yandell, C. A. Evans, R. A. Holt, J. D. Gocayne, P. Amanatides, R. M. Ballew, D. H. Huson, J. R. Wortman, Q. Zhang, C. D. Kodira, X. H. Zheng, L. Chen, M. Skupski, G. Subramanian, P. D. Thomas, J. Zhang, G. L. Gabor Miklos, C. Nelson, S. Broder, A. G. Clark, J. Nadeau, V. A. McKusick, N. Zinder, A. J. Levine, R. J. Roberts, M. Simon, C. Slayman, M. Hunkapiller, R. Bolanos, A. Delcher, I. Dew, D. Fasulo, M. Flanigan, L. Florea, A. Halpern, S. Hannenhalli, S. Kravitz, S. Levy, C. Mobarry, K. Reinert, K. Remington, J. Abu-Threideh, E. Beasley, K. Biddick, V. Bonazzi, R. Brandon, M. Cargill, I. Chandramouliswaran, R. Charlab, K. Chaturvedi, Z. Deng, V. Di Francesco, P. Dunn, K. Eilbeck, C. Evangelista, A. E. Gabrielian, W. Gan, W. Ge, F. Gong, Z. Gu, P. Guan, T. J. Heiman, M. E. Higgins, R. R. Ji, Z. Ke, K. A. Ketchum, Z. Lai, Y. Lei, Z. Li, J. Li, Y. Liang, X. Lin, F. Lu, G. V. Merkulov, N. Milshina, H. M. Moore, A. K. Naik, V. A. Narayan, B. Neelam, D. Nusskern, D. B. Rusch, S. Salzberg, W. Shao, B. Shue, J. Sun, Z. Wang, A. Wang, X. Wang, J. Wang, M. Wei, R. Wides, C. Xiao, C. Yan, A. Yao, J. Ye, M. Zhan, W. Zhang, H. Zhang, Q. Zhao, L. Zheng, F. Zhong, W. Zhong, S. Zhu, S. Zhao, D. Gilbert, S. Baumhueter, G. Spier, C. Carter, A. Cravchik, T. Woodage, F. Ali, H. An, A. Awe, D. Baldwin, H. Baden, M. Barnstead, I. Barrow, K. Beeson, D. Busam, A. Carver, A. Center, M. L. Cheng, L. Curry, S. Danaher, L. Davenport, R. Desilets, S. Dietz, K. Dodson, L. Doup, S. Ferriera, N. Garg, A. Gluecksmann, B. Hart, J. Haynes, C. Haynes, C. Heiner, S. Hladun, D. Hostin, J. Houck, T. Howland, C. Ibegwam, J. Johnson, F. Kalush, L. Kline, S. Koduru, A. Love, F. Mann, D. May, S. McCawley, T. McIntosh, I. McMullen, M. Moy, L. Moy, B. Murphy, K. Nelson, C. Pfannkoch, E. Pratts, V. Puri, H. Qureshi, M. Reardon, R. Rodriguez, Y. H. Rogers, D. Romblad, B. Ruhfel, R. Scott, C. Sitter, M. Smallwood, E. Stewart, R. Strong, E. Suh, R. Thomas, N. N. Tint, S. Tse, C. Vech, G. Wang, J. Wetter, S. Williams, M. Williams, S. Windsor, E. Winn-Deen, K. Wolfe, J. Zaveri, K. Zaveri, J. F. Abril, R. Guigó, M. J. Campbell, K. V. Sjolander, B. Karlak, A. Kejariwal, H. Mi, B. Lazareva, T. Hatton, A. Narechania, K. Diemer, A. Muruganujan, N. Guo, S. Sato, V. Bafna, S. Istrail, R. Lippert, R. Schwartz, B. Walenz, S. Yooseph, D. Allen, A. Basu, J. Baxendale, L. Blick, M. Caminha, J. Carnes-Stine, P. Caulk, Y. H. Chiang, M. Coyne, C. Dahlke, A. Mays, M. Dombroski, M. Donnelly, D. Ely, S. Esparham, C. Fosler, H. Gire, S. Glanowski, K. Glasser, A. Glodek, M. Gorokhov, K. Graham, B. Gropman, M. Harris, J. Heil, S. Henderson, J. Hoover, D. Jennings, C. Jordan, J. Jordan, J. Kasha, L. Kagan, C. Kraft, A. Levitsky, M. Lewis, X. Liu, J. Lopez, D. Ma, W. Majoros, J. McDaniel, S. Murphy, M. Newman, T. Nguyen, N. Nguyen, M. Nodell, S. Pan, J. Peck, M. Peterson, W. Rowe, R. Sanders, J. Scott, M. Simpson, T. Smith, A. Sprague, T. Stockwell, R. Turner, E. Venter, M. Wang, M. Wen, D. Wu, M. Wu, A. Xia, A. Zandieh, X. Zhu posted to assembly genome human thesis by Neeperando on 2008-07-17 19:49:59 as along with 33 people and 3 groups rshe dspringett humburg vplagnol mqbphcw3 Scis0000002 fisherp sgoetz thegoose treangen frohike jo_davies reyez twenta aramata Cortel jwortman jnemecek bicko Dax42 yas balajis xdeupi arcticrasta dgront olympos incovoma naegele mimulus_99 brant granujilla CitoJam renatomilani Proteinkinases T_lab LabCompMed

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thesis	98
assembly	55
alignment	31
read	27
short	20
synteny	16
comparative	14
validation	10
genome	9
variation	9
matepair	8
reconstruction	8
analysis	7
structural	7
genomics	6
graph	6
network	6
parallel	6
detection	5
inference	5
malaria	5
pair	5
amos	4
gambiae	4
map	4
scaffolding	4
sequencing	4
breakpoints	3
distributed	3
drosophila	3
human	3
mapping	3
repeat	3
whole	3
copy	2
dna	2
end	2
gene_order	2
grid	2
haplotype	2
homology	2
number	2
paired	2
pyrosequencing	2
review	2
transposon	2
tree	2
chirp	1
clique	1
compilers_textbook	1
condor	1
coverage	1
database	1
distance	1
duplication	1
dynamic	1
filesystem	1
fragment	1
gene_teams	1
grammar	1
hawkeye	1
interval	1
k-partite	1
learning	1
machine	1
mapreduce	1
mass-spectrometry	1
multiple	1
next-gen-sequencing	1
overlap	1
partial_order	1
phylogenetic	1
plasmodium	1
population	1
programming	1
rearrangement	1
reconciliation	1
resequencing	1
segmental	1
snp	1
string	1
viewer	1
workqueue	1

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