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Olaf_Ilzins's library [70 articles]

Recent papers added to Olaf_Ilzins's library.
  • Unraveling the secret lives of bacteria: use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression.
    Microbiol Mol Biol Rev, Vol. 69, No. 2. (June 2005), pp. 217-261.
    by H Rediers, PB Rainey, J Vanderleyden, R De Mot
    posted to molecular_techniques by Olaf_Ilzins on 2008-05-06 21:25:55 as * along with 1 person bakakaj
  • Interpreting Ecological Diversity Indices Applied to Terminal Restriction Fragment Length Polymorphism Data: Insights from Simulated Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 16. (15 August 2007), pp. 5276-5283.
    by Christopher B Blackwood, Deborah Hudleston, Donald R Zak, Jeffrey S Buyer
    posted to validation statistics rflp molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-05-06 21:24:52 as **
  • Quantitative and Qualitative beta Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 5. (1 March 2007), pp. 1576-1585.
    by Catherine A Lozupone, Micah Hamady, Scott T Kelley, Rob Knight
    posted to phylogeny microbial_diversity 16s by Olaf_Ilzins on 2008-05-06 21:17:09 as **
  • Comparison of Two Fingerprinting Techniques, Terminal Restriction Fragment Length Polymorphism and Automated Ribosomal Intergenic Spacer Analysis, for Determination of Bacterial Diversity in Aquatic Environments
    Appl. Environ. Microbiol., Vol. 72, No. 9. (1 September 2006), pp. 5982-5989.
    by R Danovaro, GM Luna, A Dell'anno, B Pietrangeli
    posted to molecular_techniques microbial_diversity frlp arisa by Olaf_Ilzins on 2008-05-06 21:05:10 as **
  • Comparison of Different Primer Sets for Use in Automated Ribosomal Intergenic Spacer Analysis of Complex Bacterial Communities
    Appl. Environ. Microbiol., Vol. 70, No. 10. (1 October 2004), pp. 6147-6156.
    by Massimiliano Cardinale, Lorenzo Brusetti, Paola Quatrini, Sara Borin, Anna M Puglia, Aurora Rizzi, Elisabetta Zanardini, Claudia Sorlini, Cesare Corselli, Daniele Daffonchio
    posted to molecular_techniques microbial_diversity arisa by Olaf_Ilzins on 2008-05-06 21:04:26 as **
  • Status of the Microbial Census
    Microbiol. Mol. Biol. Rev., Vol. 68, No. 4. (1 December 2004), pp. 686-691.
    by Patrick D Schloss, Jo Handelsman
    posted to molecular_techniques microbial_diversity bacterial_taxonomy by Olaf_Ilzins on 2008-05-06 19:34:07 as ***
  • Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
    Appl. Environ. Microbiol., Vol. 67, No. 10. (1 October 2001), pp. 4399-4406.
    by Jennifer B Hughes, Jessica J Hellmann, Taylor H Ricketts, Brendan J Bohannan
    posted to statistics review microbial_diversity indicators by Olaf_Ilzins on 2008-04-30 20:40:30 as *** along with 4 people and 1 group vrich jmeppley Stenuite andrewirwin Biological oceanography
  • Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.
    J Bacteriol, Vol. 186, No. 9. (May 2004), pp. 2629-2635.
    by SG Acinas, LA Marcelino, V Klepac-Ceraj, MF Polz
    posted to validation statistics molecular_techniques microbial_diversity bacterial_taxonomy 16s by Olaf_Ilzins on 2008-04-30 20:09:54 as **
  • PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.
    Appl Environ Microbiol, Vol. 71, No. 12. (December 2005), pp. 8966-8969.
    by SG Acinas, R Sarma-Rupavtarm, V Klepac-Ceraj, MF Polz
    posted to validation indicators 16s by Olaf_Ilzins on 2008-04-30 20:04:53 as ** along with 1 person vrich
  • Microbial diversity in the deep sea and the underexplored "rare biosphere"
    Proc Natl Acad Sci U S A (31 July 2006)
    by Mitchell L L Sogin, Hilary G G Morrison, Julie A A Huber, David Mark M Welch, Susan M M Huse, Phillip R R Neal, Jesus M M Arrieta, Gerhard J J Herndl
    posted to srts molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-04-29 20:38:17 as *** along with 7 people and 1 group jmeppley balicea madhadron rabu bluto xingxu kinestetika microbiology_nijmegen
  • Unexpectedly High Bacterial Diversity in Arctic Tundra Relative to Boreal Forest Soils, Revealed by Serial Analysis of Ribosomal Sequence Tags
    Appl. Environ. Microbiol., Vol. 71, No. 10. (1 October 2005), pp. 5710-5718.
    by Josh D Neufeld, William W Mohn
    posted to srts molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-04-29 20:27:39 as ***
  • A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
    BMC Bioinformatics, Vol. 9, No. 34. (23 January 2008), pp. 1-15.
    by PD Schloss, J Handelsman
    edited by Bio M Central
    posted to statistics metagenomics by Olaf_Ilzins on 2008-04-29 20:11:25 as **
  • Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem
    PNAS, Vol. 104, No. 8. (20 February 2007), pp. 2761-2766.
    by Alban Ramette, James M Tiedje
    posted to statistics microbial_diversity indicators by Olaf_Ilzins on 2008-04-29 16:09:23 as ** along with 1 person CareyNadell
  • Exploring prokaryotic taxonomy
    Int J Syst Evol Microbiol, Vol. 54, No. 1. (1 January 2004), pp. 7-13.
    by Timothy G Lilburn, George M Garrity
    posted to bacterial_taxonomy by Olaf_Ilzins on 2008-04-29 16:01:20 as **
  • Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria.
    Appl Environ Microbiol, Vol. 71, No. 2. (February 2005), pp. 826-834.
    by KE Davis, SJ Joseph, PH Janssen
    posted to cultures 16s by Olaf_Ilzins on 2008-04-29 15:41:35 as ** along with 2 people and 1 group jdelcampo rvgomes Microbial-Ecology
  • Improved Culturability of Soil Bacteria and Isolation in Pure Culture of Novel Members of the Divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
    Appl. Environ. Microbiol., Vol. 68, No. 5. (1 May 2002), pp. 2391-2396.
    by Peter H Janssen, Penelope S Yates, Bronwyn E Grinton, Paul M Taylor, Michelle Sait
    posted to cultures 16s by Olaf_Ilzins on 2008-04-29 15:37:46 as **
  • Laboratory Cultivation of Widespread and Previously Uncultured Soil Bacteria
    Appl. Environ. Microbiol., Vol. 69, No. 12. (1 December 2003), pp. 7210-7215.
    by Shayne J Joseph, Philip Hugenholtz, Parveen Sangwan, Catherine A Osborne, Peter H Janssen
    posted to cultures 16s by Olaf_Ilzins on 2008-04-29 15:35:35 as **
  • New Strategies for Cultivation and Detection of Previously Uncultured Microbes
    Appl. Environ. Microbiol., Vol. 70, No. 8. (1 August 2004), pp. 4748-4755.
    by Bradley S Stevenson, Stephanie A Eichorst, John T Wertz, Thomas M Schmidt, John A Breznak
    posted to molecular_techniques cultures by Olaf_Ilzins on 2008-04-29 15:27:28 as *** along with 2 people and 1 group jdelcampo rvgomes Microbial-Ecology
  • Microcolony Cultivation on a Soil Substrate Membrane System Selects for Previously Uncultured Soil Bacteria
    Appl. Environ. Microbiol., Vol. 71, No. 12. (1 December 2005), pp. 8714-8720.
    by Belinda C Ferrari, Svend J Binnerup, Michael Gillings
    posted to fish cultures by Olaf_Ilzins on 2008-04-29 15:19:46 as ***
  • Microbial Diversity in Natural Asphalts of the Rancho La Brea Tar Pits
    Appl. Environ. Microbiol., Vol. 73, No. 14. (15 July 2007), pp. 4579-4591.
    by Jong-Shik Kim, David E Crowley
    posted to petroleum microbial_diversity by Olaf_Ilzins on 2008-04-23 17:03:55 as ***
  • Recent Advances in Petroleum Microbiology
    Microbiol. Mol. Biol. Rev., Vol. 67, No. 4. (1 December 2003), pp. 503-549.
    by Jonathan D Van Hamme, Ajay Singh, Owen P Ward
    posted to review petroleum by Olaf_Ilzins on 2008-04-23 17:02:52 as **
  • The Microbial Community Structure in Petroleum-Contaminated Sediments Corresponds to Geophysical Signatures
    Appl. Environ. Microbiol., Vol. 73, No. 9. (1 May 2007), pp. 2860-2870.
    by Jonathan P Allen, Estella A Atekwana, Eliot A Atekwana, Joseph W Duris, Dale D Werkema, Silvia Rossbach
    posted to petroleum microbial_diversity by Olaf_Ilzins on 2008-04-23 16:54:29 as ***
  • PCR-DGGE assessment of the bacterial diversity of breast milk in women with lactational infectious mastitis
    BMC Infectious Diseases, Vol. 8, No. 51. (2008)
    by S Delgado, R Arroyo, R Martin, JM Rodriguez
    edited by Biomed Central
    posted to culturable_non_culturable_bias cultures by Olaf_Ilzins on 2008-04-21 20:09:52 as *
  • The shape of microbial diversity
    Environmental Microbiology, Vol. 7, No. 4. (April 2005), pp. 476-476.
    by Giovannoni Steve
    posted to review by Olaf_Ilzins on 2008-04-18 22:01:27 as **
  • Microbial diversity and soil functions
    European Journal of Soil Science, Vol. 54, No. 4. (2003), pp. 655-670.
    by P Nannipieri, J Ascher, MT Ceccherini, L Landi, G Pietramellara, G Renella
    posted to microbial_diversity review by Olaf_Ilzins on 2008-04-18 22:01:07 as **
  • Assessment of the rind microbial diversity in a farmhouse-produced vs a pasteurized industrially produced soft red-smear cheese using both cultivation and rDNA-based methods
    Journal of Applied Microbiology, Vol. 97, No. 3. (2004), pp. 546-556.
    by C Feurer, F Irlinger, HE Spinnler, P Glaser, T Vallaeys
    posted to culturable_non_culturable_bias microbial_diversity molecular_techniques sscp by Olaf_Ilzins on 2008-04-18 21:23:45 as **
  • Biodegradation and bioremediation of hydrocarbons in extreme environments
    Applied Microbiology and Biotechnology, Vol. V56, No. 5. (2001), pp. 650-663.
    by R Margesin, F Schinner
    posted to biodegradation bioremediation petroleum review by Olaf_Ilzins on 2008-04-18 21:17:48 as ** along with 1 person ElenaCrisza
  • Bacterial Diversity and Community Structure in an Aerated Lagoon Revealed by Ribosomal Intergenic Spacer Analyses and 16S Ribosomal DNA Sequencing
    Appl. Environ. Microbiol., Vol. 67, No. 4. (1 April 2001), pp. 1565-1574.
    by Zhongtang Yu, William W Mohn
    posted to 23s microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 21:15:47 as **
  • Degradation of Polycyclic Aromatic Hydrocarbons at Low Temperature under Aerobic and Nitrate-Reducing Conditions in Enrichment Cultures from Northern Soils
    Appl. Environ. Microbiol., Vol. 69, No. 1. (1 January 2003), pp. 275-284.
    by Mikael Eriksson, Erik Sodersten, Zhongtang Yu, Gunnel Dalhammar, William W Mohn
    posted to biodegradation cultures by Olaf_Ilzins on 2008-04-18 21:13:30 as *
  • Retrieval of entire genes from environmental DNA by inverse PCR with pre-amplification of target genes using primers containing locked nucleic acids
    Environmental Microbiology, Vol. 10, No. 4. (April 2008), pp. 978-987.
    by Yamada, Kazutaka, Terahara, Takeshi, Kurata, Shinya, Yokomaku, Toyokazu, Tsuneda, Satoshi, Harayama, Shigeaki
    posted to ipcr molecular_techniques by Olaf_Ilzins on 2008-04-18 21:07:59 as **
  • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.
    Applied and environmental microbiology, Vol. 73, No. 16. (August 2007), pp. 5261-5267.
    by Q Wang, GM Garrity, JM Tiedje, JR Cole
    posted to phylogeny statistics by Olaf_Ilzins on 2008-04-18 20:59:43 as ** along with 1 person wenhan
  • Uncultured archaea in deep marine subsurface sediments: have we caught them all?
    ISME J, Vol. 2, No. 1. (November 2007), pp. 3-18.
    by Andreas Teske, Ketil B Sorensen
    posted to microbial_diversity review by Olaf_Ilzins on 2008-04-18 20:57:01 as ** along with 1 person vrich
  • Comparative analysis of environmental DNA extraction and purification methods from different humic acid-rich soils
    Journal of applied Microbiology, Vol. 102 (2007), pp. 265-273.
    by FM Lakay, A Botha, BA Prior
    posted to molecular_techniques by Olaf_Ilzins on 2008-04-18 20:47:11 as ***
  • Oil Field Souring Control by Nitrate-Reducing Sulfurospirillum spp. That Outcompete Sulfate-Reducing Bacteria for Organic Electron Donors
    Appl. Environ. Microbiol., Vol. 73, No. 8. (15 April 2007), pp. 2644-2652.
    by Casey Hubert, Gerrit Voordouw
    posted to petroleum by Olaf_Ilzins on 2008-04-18 20:40:11 as **
  • Synergistic Inhibition of Microbial Sulfide Production by Combinations of the Metabolic Inhibitor Nitrite and Biocides
    Appl. Environ. Microbiol., Vol. 72, No. 12. (1 December 2006), pp. 7897-7901.
    by Anne E Greene, Veronique Brunelle, Gary E Jenneman, Gerrit Voordouw
    posted to petroleum by Olaf_Ilzins on 2008-04-18 20:38:29 as *
  • Composition of Soil Microbial Communities Enriched on a Mixture of Aromatic Hydrocarbons
    Appl. Environ. Microbiol., Vol. 66, No. 12. (1 December 2000), pp. 5282-5289.
    by Anne E Greene, Jason G Kay, Karim Jaber, Les G Stehmeier, Gerrit Voordouw
    posted to microbial_diversity rsgp by Olaf_Ilzins on 2008-04-18 20:31:58 as **
  • Composition of Toluene-Degrading Microbial Communities from Soil at Different Concentrations of Toluene
    Appl. Environ. Microbiol., Vol. 65, No. 7. (1 July 1999), pp. 3064-3070.
    by Casey Hubert, Yin Shen, Gerrit Voordouw
    posted to biodegradation culturable_non_culturable_bias cultures microbial_diversity petroleum rsgp by Olaf_Ilzins on 2008-04-18 20:28:31 as **
  • Identification of Hydrocarbon-Degrading Bacteria in Soil by Reverse Sample Genome Probing
    Appl. Environ. Microbiol., Vol. 64, No. 2. (1 February 1998), pp. 637-645.
    by Yin Shen, Lester G Stehmeier, Gerrit Voordouw
    posted to biodegradation petroleum rsgp by Olaf_Ilzins on 2008-04-18 20:19:17 as **
  • Reverse Sample Genome Probing, a New Technique for Identification of Bacteria in Environmental Samples by DNA Hybridization, and Its Application to the Identification of Sulfate-Reducing Bacteria in Oil Field Samples
    Appl. Environ. Microbiol., Vol. 57, No. 11. (1 November 1991), pp. 3070-3078.
    by Gerrit Voordouw, Johanna K Voordouw, Roxann R Karkhoff-Schweizer, Phillip M Fedorak, Donald W Westlake
    posted to molecular_techniques rsgp by Olaf_Ilzins on 2008-04-18 20:10:12 as **
  • Effect of Nitrate Injection on the Microbial Community in an Oil Field as Monitored by Reverse Sample Genome Probing
    Appl. Environ. Microbiol., Vol. 63, No. 5. (1 May 1997), pp. 1785-1793.
    by Aj Telang, S Ebert, Jm Foght, Dws Westlake, Ge Jenneman, D Gevertz, G Voordouw
    posted to microbial_diversity molecular_techniques rsgp by Olaf_Ilzins on 2008-04-18 20:01:13 as ** along with 1 person rabu
  • Recent advances in molecular techniques for the detection of phylogenetic markers and functional genes in microbial communities
    FEMS Microbiology Letters, Vol. 275, No. 2. (2007), pp. 183-190.
    by Stanley CK Lau, Wen T Liu
    posted to molecular_techniques review by Olaf_Ilzins on 2008-04-18 19:53:48 as **
  • Multivariate analyses in microbial ecology
    FEMS Microbiology Ecology, Vol. 62, No. 2. (2007), pp. 142-160.
    by Alban Ramette
    posted to microbial_diversity review statistics by Olaf_Ilzins on 2008-04-18 19:51:49 as ** along with 3 people and 1 group vrich jmeppley Stenuite Microbial-Ecology
  • Culture-Dependent and Culture-Independent Characterization of Microbial Assemblages Associated with High-Temperature Petroleum Reservoirs
    Appl. Environ. Microbiol., Vol. 66, No. 2. (1 February 2000), pp. 700-711.
    by VJ Orphan, LT Taylor, D Hafenbradl, EF Delong
    posted to culturable_non_culturable_bias microbial_diversity by Olaf_Ilzins on 2008-04-18 19:31:51 as *****
  • Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set
    Microbiology, Vol. 148, No. 1. (1 January 2002), pp. 257-266.
    by Mangala A Nadkarni, Elizabeth F Martin, Nicholas A Jacques, Neil Hunter
    posted to molecular_techniques rtime_pcr by Olaf_Ilzins on 2008-04-18 19:27:04 as **
  • Microbial diversity - insights from population genetics
    Environmental Microbiology, Vol. 0, No. 0. (0000), pp. ???-???.
    by Ted H Mes
    posted to microbial_diversity review by Olaf_Ilzins on 2008-04-18 16:49:03 as ** along with 4 people and 2 groups jmeppley kinestetika Katje Thaverkamp Microbial-Ecology microbiology_nijmegen
  • Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment
    Appl. Environ. Microbiol., Vol. 68, No. 10. (1 October 2002), pp. 5064-5081.
    by Alexander Loy, Angelika Lehner, Natuschka Lee, Justyna Adamczyk, Harald Meier, Jens Ernst, Karl-Heinz Schleifer, Michael Wagner
    posted to microarray microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 16:47:28 as **
  • 16S rRNA Gene-Based Oligonucleotide Microarray for Environmental Monitoring of the Betaproteobacterial Order "Rhodocyclales"
    Appl. Environ. Microbiol., Vol. 71, No. 3. (1 March 2005), pp. 1373-1386.
    by Alexander Loy, Claudia Schulz, Sebastian Lucker, Andreas Schopfer-Wendels, Kilian Stoecker, Christian Baranyi, Angelika Lehner, Michael Wagner
    posted to microarray microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 16:44:49 as **
  • Microarray and Functional Gene Analyses of Sulfate-Reducing Prokaryotes in Low-Sulfate, Acidic Fens Reveal Cooccurrence of Recognized Genera and Novel Lineages
    Appl. Environ. Microbiol., Vol. 70, No. 12. (1 December 2004), pp. 6998-7009.
    by Alexander Loy, Kirsten Kusel, Angelika Lehner, Harold L Drake, Michael Wagner
    posted to microarray microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 16:19:14 as *
  • Simultaneous analysis of microbial identity and function using NanoSIMS
    Environmental Microbiology, Vol. 0, No. 0. (0), pp. ???-???.
    by Tianlun Li, Ting Di Wu, Laurent Mazeas, Laurent Toffin, Jean, Gerard Leblon, Theodore Bouchez
    posted to microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 16:12:10 as ** along with 1 person and 1 group Katje microbiology_nijmegen
  • Understanding Bias in Microbial Community Analysis Techniques due to rrn Operon Copy Number Heterogeneity
    BioTechniques, Vol. 34 (April 2003), pp. 790-802.
    by LD Crosby, CS Criddle
    posted to indicators microbial_diversity review_genomic statistics validation by Olaf_Ilzins on 2008-04-18 16:07:32 as ***
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