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Olaf_Ilzins's library [88 articles]

Recent papers added to Olaf_Ilzins's library ordered by importance.
  • Culture-Dependent and Culture-Independent Characterization of Microbial Assemblages Associated with High-Temperature Petroleum Reservoirs
    Appl. Environ. Microbiol., Vol. 66, No. 2. (1 February 2000), pp. 700-711.
    by VJ Orphan, LT Taylor, D Hafenbradl, EF Delong
    posted to culturable_non_culturable_bias microbial_diversity by Olaf_Ilzins on 2008-04-18 19:31:51 as *****
  • Radioisotopic, Culture-Based, and Oligonucleotide Microchip Analyses of Thermophilic Microbial Communities in a Continental High-Temperature Petroleum Reservoir
    Appl. Environ. Microbiol., Vol. 69, No. 10. (1 October 2003), pp. 6143-6151.
    by Elizaveta A Bonch-Osmolovskaya, Margarita L Miroshnichenko, Alexander V Lebedinsky, Nikolai A Chernyh, Tamara N Nazina, Valery S Ivoilov, Sergey S Belyaev, Eugenia S Boulygina, Yury P Lysov, Alexander N Perov, Andrei D Mirzabekov, Hans Hippe, Erko Stackebrandt, Stephane L'Haridon, Christian Jeanthon
    posted to culturable_non_culturable_bias cultures microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-17 16:13:06 as *****
  • Sequencing-Independent Method To Generate Oligonucleotide Probes Targeting a Variable Region in Bacterial 16S rRNA by PCR with Detachable Primers
    Appl. Environ. Microbiol., Vol. 68, No. 12. (1 December 2002), pp. 6077-6086.
    by Stefan Bertilsson, Colleen M Cavanaugh, Martin F Polz
    posted to molecular_techniques srts by Olaf_Ilzins on 2008-04-17 15:55:53 as ****
  • Synthetic biology projects in vitro
    Genome Res., Vol. 17, No. 1. (1 January 2007), pp. 1-6.
    by Anthony C Forster, George M Church
    posted to sinthetic_biology review_synthetic_biology review by Olaf_Ilzins on 2008-06-09 19:26:30 as *** along with 2 people kjedler austin
  • Status of the Microbial Census
    Microbiol. Mol. Biol. Rev., Vol. 68, No. 4. (1 December 2004), pp. 686-691.
    by Patrick D Schloss, Jo Handelsman
    posted to molecular_techniques microbial_diversity bacterial_taxonomy by Olaf_Ilzins on 2008-05-06 19:34:07 as *** along with 1 person mcox
  • Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
    Appl. Environ. Microbiol., Vol. 67, No. 10. (1 October 2001), pp. 4399-4406.
    by Jennifer B Hughes, Jessica J Hellmann, Taylor H Ricketts, Brendan J Bohannan
    posted to statistics review microbial_diversity indicators by Olaf_Ilzins on 2008-04-30 20:40:30 as *** along with 6 people and 2 groups djkt mcox vrich jmeppley Stenuite andrewirwin iSEEM Biological oceanography
  • Microbial diversity in the deep sea and the underexplored "rare biosphere"
    Proc Natl Acad Sci U S A (31 July 2006)
    by Mitchell L L Sogin, Hilary G G Morrison, Julie A A Huber, David Mark M Welch, Susan M M Huse, Phillip R R Neal, Jesus M M Arrieta, Gerhard J J Herndl
    posted to srts molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-04-29 20:38:17 as *** along with 8 people and 1 group mcox jmeppley balicea madhadron rabu bluto xingxu kinestetika microbiology_nijmegen
  • Unexpectedly High Bacterial Diversity in Arctic Tundra Relative to Boreal Forest Soils, Revealed by Serial Analysis of Ribosomal Sequence Tags
    Appl. Environ. Microbiol., Vol. 71, No. 10. (1 October 2005), pp. 5710-5718.
    by Josh D Neufeld, William W Mohn
    posted to srts molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-04-29 20:27:39 as *** along with 1 person mcox
  • New Strategies for Cultivation and Detection of Previously Uncultured Microbes
    Appl. Environ. Microbiol., Vol. 70, No. 8. (1 August 2004), pp. 4748-4755.
    by Bradley S Stevenson, Stephanie A Eichorst, John T Wertz, Thomas M Schmidt, John A Breznak
    posted to molecular_techniques cultures by Olaf_Ilzins on 2008-04-29 15:27:28 as *** along with 2 people and 1 group jdelcampo rvgomes Microbial-Ecology
  • Microcolony Cultivation on a Soil Substrate Membrane System Selects for Previously Uncultured Soil Bacteria
    Appl. Environ. Microbiol., Vol. 71, No. 12. (1 December 2005), pp. 8714-8720.
    by Belinda C Ferrari, Svend J Binnerup, Michael Gillings
    posted to fish cultures by Olaf_Ilzins on 2008-04-29 15:19:46 as ***
  • Microbial Diversity in Natural Asphalts of the Rancho La Brea Tar Pits
    Appl. Environ. Microbiol., Vol. 73, No. 14. (15 July 2007), pp. 4579-4591.
    by Jong-Shik Kim, David E Crowley
    posted to petroleum microbial_diversity by Olaf_Ilzins on 2008-04-23 17:03:55 as ***
  • The Microbial Community Structure in Petroleum-Contaminated Sediments Corresponds to Geophysical Signatures
    Appl. Environ. Microbiol., Vol. 73, No. 9. (1 May 2007), pp. 2860-2870.
    by Jonathan P Allen, Estella A Atekwana, Eliot A Atekwana, Joseph W Duris, Dale D Werkema, Silvia Rossbach
    posted to petroleum microbial_diversity by Olaf_Ilzins on 2008-04-23 16:54:29 as ***
  • Comparative analysis of environmental DNA extraction and purification methods from different humic acid-rich soils
    Journal of applied Microbiology, Vol. 102 (2007), pp. 265-273.
    by FM Lakay, A Botha, BA Prior
    posted to molecular_techniques by Olaf_Ilzins on 2008-04-18 20:47:11 as ***
  • Understanding Bias in Microbial Community Analysis Techniques due to rrn Operon Copy Number Heterogeneity
    BioTechniques, Vol. 34 (April 2003), pp. 790-802.
    by LD Crosby, CS Criddle
    posted to indicators microbial_diversity review_genomic statistics validation by Olaf_Ilzins on 2008-04-18 16:07:32 as ***
  • Empirical and Theoretical Bacterial Diversity in Four Arizona Soils
    Appl. Environ. Microbiol., Vol. 68, No. 6. (1 June 2002), pp. 3035-3045.
    by John Dunbar, Susan M Barns, Lawrence O Ticknor, Cheryl R Kuske
    posted to indicators microbial_diversity statistics by Olaf_Ilzins on 2008-04-18 14:23:59 as *** along with 1 person mcox
  • Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems
    Microbiology, Vol. 154, No. 2. (1 February 2008), pp. 347-359.
    by Philippe N Bertin, Claudine Medigue, Philippe Normand
    posted to review_genomic by Olaf_Ilzins on 2008-04-17 16:03:16 as *** along with 3 people bluto vrich operon
  • Evaluation of 23S rRNA PCR Primers for Use in Phylogenetic Studies of Bacterial Diversity.
    Appl Environ Microbiol, Vol. 72, No. 3. (March 2006), pp. 2221-2225.
    by DE Hunt, V Klepac-Ceraj, SG Acinas, C Gautier, S Bertilsson, MF Polz
    posted to 23s molecular_techniques by Olaf_Ilzins on 2008-04-17 15:59:43 as ***
  • Environmental Whole-Genome Amplification To Access Microbial Populations in Contaminated Sediments
    Appl. Environ. Microbiol., Vol. 72, No. 5. (1 May 2006), pp. 3291-3301.
    by Carl B Abulencia, Denise L Wyborski, Joseph A Garcia, Mircea Podar, Wenqiong Chen, Sherman H Chang, Hwai W Chang, David Watson, Eoin L Brodie, Terry C Hazen, Martin Keller
    posted to microbial_diversity metagenomics by Olaf_Ilzins on 2008-04-16 21:30:18 as *** along with 2 people mcox vrich
  • Targeted Access to the Genomes of Low-Abundance Organisms in Complex Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 10. (15 May 2007), pp. 3205-3214.
    by Mircea Podar, Carl B Abulencia, Marion Walcher, Don Hutchison, Karsten Zengler, Joseph A Garcia, Trevin Holland, David Cotton, Loren Hauser, Martin Keller
    posted to microbial_diversity metagenomics by Olaf_Ilzins on 2008-04-16 21:28:16 as *** along with 2 people and 2 groups vaulot vrich Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Uncovering the Microbial Diversity of the Alberta Oil Sands through Metagenomics: A Stepping Stone for Enhanced Oil Recovery and Environmental Solutions
    by J Foght, R Holt, T Jack, S Larter, R Seshadri, Kruijsdijk, Rooijen, G Voordouw
    posted to metagenomics by Olaf_Ilzins on 2008-04-16 21:05:44 as ***
  • Substantially enhanced cloning efficiency of SAGE (Serial Analysis of Gene Expression) by adding a heating step to the original protocol
    Nucl. Acids Res., Vol. 27, No. 3. (1 February 1999), pp. 917-918.
    by M Kenzelmann, K Muhlemann
    posted to sage molecular_techniques by Olaf_Ilzins on 2008-07-14 18:22:03 as **
  • Simple, rapid method for direct isolation of nucleic acids from aquatic environments.
    Applied and environmental microbiology, Vol. 55, No. 3. (March 1989), pp. 548-554.
    by CC Somerville, IT Knight, WL Straube, RR Colwell
    posted to molecular_techniques dna_extraction by Olaf_Ilzins on 2008-07-10 17:01:56 as ** along with 1 person mcox
  • Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)
    Proceedings of the National Academy of Sciences (13 June 2008), 0712027105.
    by Jose M Gonzalez, Beatriz Fernandez-Gomez, Antoni Fernandez-Guerra, Laura Gomez-Consarnau, Olga Sanchez, Montserrat Coll-Llado, Del, Lorena Escudero, Raquel Rodriguez-Martinez, Laura Alonso-Saez, Mikel Latasa, Ian Paulsen, Olga Nedashkovskaya, Itziar Lekunberri, Jarone Pinhassi, Carlos Pedros-Alio
    posted to molecular_techniques metabolic_diversity biodegradation by Olaf_Ilzins on 2008-06-18 15:03:27 as ** along with 1 person jdelcampo
  • Comparisons of Different Hypervariable Regions of rrs Genes for Use in Fingerprinting of Microbial Communities by PCR-Denaturing Gradient Gel Electrophoresis
    Appl. Environ. Microbiol., Vol. 70, No. 8. (1 August 2004), pp. 4800-4806.
    by Zhongtang Yu, Mark Morrison
    posted to validation molecular_techniques microbial_diversity dgge 16s by Olaf_Ilzins on 2008-06-13 15:59:27 as **
  • Evaluations of Different Hypervariable Regions of Archaeal 16S rRNA Genes in Profiling of Methanogens by Archaea-Specific PCR and Denaturing Gradient Gel Electrophoresis
    Appl. Environ. Microbiol., Vol. 74, No. 3. (1 February 2008), pp. 889-893.
    by Zhongtang Yu, Ruben Garcia-Gonzalez, Floyd L Schanbacher, Mark Morrison
    posted to microbial_diversity dgge 16s by Olaf_Ilzins on 2008-06-13 15:51:31 as **
  • Use of Single-Point Genome Signature Tags as a Universal Tagging Method for Microbial Genome Surveys
    Appl. Environ. Microbiol., Vol. 72, No. 3. (1 March 2006), pp. 2092-2101.
    by Daniel van der Lelie, Celine Lesaulnier, Sean Mccorkle, Joke Geets, Safiyh Taghavi, John Dunn
    posted to srts molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-06-10 15:37:19 as **
  • GeneDesign: Rapid, automated design of multikilobase synthetic genes
    Genome Res., Vol. 16, No. 4. (1 April 2006), pp. 550-556.
    by Sarah M Richardson, Sarah J Wheelan, Robert M Yarrington, Jef D Boeke
    posted to synth_genes sinthetic_biology by Olaf_Ilzins on 2008-06-09 19:23:32 as ** along with 1 person cthachuk
  • Use of 16S rRNA and rpoB Genes as Molecular Markers for Microbial Ecology Studies
    Appl. Environ. Microbiol., Vol. 73, No. 1. (1 January 2007), pp. 278-288.
    by Rebecca J Case, Yan Boucher, Ingela Dahllof, Carola Holmstrom, Ford W Doolittle, Staffan Kjelleberg
    posted to molecular_techniques microbial_diversity 16s by Olaf_Ilzins on 2008-06-09 16:02:23 as **
  • Development of a universal microarray based on the ligation detection reaction and 16S rrna gene polymorphism to target diversity of cyanobacteria.
    Appl Environ Microbiol, Vol. 70, No. 12. (December 2004), pp. 7161-7172.
    by B Castiglioni, E Rizzi, A Frosini, K Sivonen, P Rajaniemi, A Rantala, MA Mugnai, S Ventura, A Wilmotte, C Boutte, S Grubisic, P Balthasart, C Consolandi, R Bordoni, A Mezzelani, C Battaglia, G De Bellis
    posted to molecular_techniques microarray by Olaf_Ilzins on 2008-06-09 15:45:40 as ** along with 1 person stsaft
  • Phylogenetic Approaches for Describing and Comparing the Diversity of Microbial Communities
    Appl. Environ. Microbiol., Vol. 68, No. 8. (1 August 2002), pp. 3673-3682.
    by Andrew P Martin
    posted to review microbial_diversity by Olaf_Ilzins on 2008-06-09 15:24:56 as ** along with 4 people and 2 groups djkt mcox jmeppley Thaverkamp iSEEM Microbial-Ecology
  • Accuracy and quality of massively-parallel DNA pyrosequencing
    Genome Biology, Vol. 8 (20 July 2007), R143.
    by Susan M Huse, Julie A Huber, Hilary G Morrison, Mitchell L Sogin, David M Welch
    posted to srts molecular_techniques by Olaf_Ilzins on 2008-06-04 16:48:06 as ** along with 7 people and 3 groups gpappas jmeppley mblwhoi grahamc azazello GustavoLacerda blobbybirdman Bioinformatics ParkinsonLab_at_MaRS gatech-compgenomics
  • Quantitative multiplexing analysis of PCR-amplified ribosomal RNA genes by hierarchical oligonucleotide primer extension reaction
    Nucl. Acids Res., Vol. 35, No. 11. (28 June 2007), e82.
    by Jer-Horng Wu, Wen-Tso Liu
    posted to molecular_techniques microbial_diversity hope by Olaf_Ilzins on 2008-05-29 19:01:09 as **
  • High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.
    Appl Environ Microbiol, Vol. 68, No. 8. (August 2002), pp. 3878-3885.
    by SA Connon, SJ Giovannoni
    posted to microbial_diversity cultures culturable_non_culturable_bias by Olaf_Ilzins on 2008-05-23 20:37:19 as ** along with 2 people and 1 group vrich jdelcampo Microbial-Ecology
  • Unbiased Whole-Genome Amplification Directly From Clinical Samples
    Genome Res., Vol. 13, No. 5. (1 May 2003), pp. 954-964.
    by Seiyu Hosono, Fawad A Faruqi, Frank B Dean, Yuefen Du, Zhenyu Sun, Xiaohong Wu, Jing Du, Stephen F Kingsmore, Michael Egholm, Roger S Lasken
    posted to molecular_techniques mda by Olaf_Ilzins on 2008-05-23 20:31:11 as ** along with 2 people and 2 groups echinotrix vaulot Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Cultivating the uncultured
    PNAS, Vol. 99, No. 24. (26 November 2002), pp. 15681-15686.
    by Karsten Zengler, Gerardo Toledo, Michael Rappe, James Elkins, Eric J Mathur, Jay M Short, Martin Keller
    posted to microbial_diversity cultures culturable_non_culturable_bias by Olaf_Ilzins on 2008-05-23 20:22:07 as ** along with 3 people and 1 group mcox jdelcampo rvgomes Microbial-Ecology
  • Interpreting Ecological Diversity Indices Applied to Terminal Restriction Fragment Length Polymorphism Data: Insights from Simulated Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 16. (15 August 2007), pp. 5276-5283.
    by Christopher B Blackwood, Deborah Hudleston, Donald R Zak, Jeffrey S Buyer
    posted to validation statistics rflp molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-05-06 21:24:52 as **
  • Quantitative and Qualitative beta Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 5. (1 March 2007), pp. 1576-1585.
    by Catherine A Lozupone, Micah Hamady, Scott T Kelley, Rob Knight
    posted to phylogeny microbial_diversity 16s by Olaf_Ilzins on 2008-05-06 21:17:09 as ** along with 1 person and 1 group djkt iSEEM
  • Comparison of Two Fingerprinting Techniques, Terminal Restriction Fragment Length Polymorphism and Automated Ribosomal Intergenic Spacer Analysis, for Determination of Bacterial Diversity in Aquatic Environments
    Appl. Environ. Microbiol., Vol. 72, No. 9. (1 September 2006), pp. 5982-5989.
    by R Danovaro, GM Luna, A Dell'anno, B Pietrangeli
    posted to molecular_techniques microbial_diversity frlp arisa by Olaf_Ilzins on 2008-05-06 21:05:10 as **
  • Comparison of Different Primer Sets for Use in Automated Ribosomal Intergenic Spacer Analysis of Complex Bacterial Communities
    Appl. Environ. Microbiol., Vol. 70, No. 10. (1 October 2004), pp. 6147-6156.
    by Massimiliano Cardinale, Lorenzo Brusetti, Paola Quatrini, Sara Borin, Anna M Puglia, Aurora Rizzi, Elisabetta Zanardini, Claudia Sorlini, Cesare Corselli, Daniele Daffonchio
    posted to molecular_techniques microbial_diversity arisa by Olaf_Ilzins on 2008-05-06 21:04:26 as **
  • Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.
    J Bacteriol, Vol. 186, No. 9. (May 2004), pp. 2629-2635.
    by SG Acinas, LA Marcelino, V Klepac-Ceraj, MF Polz
    posted to validation statistics molecular_techniques microbial_diversity bacterial_taxonomy 16s by Olaf_Ilzins on 2008-04-30 20:09:54 as ** along with 1 person mcox
  • PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.
    Appl Environ Microbiol, Vol. 71, No. 12. (December 2005), pp. 8966-8969.
    by SG Acinas, R Sarma-Rupavtarm, V Klepac-Ceraj, MF Polz
    posted to validation indicators 16s by Olaf_Ilzins on 2008-04-30 20:04:53 as ** along with 1 person vrich
  • A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
    BMC Bioinformatics, Vol. 9, No. 34. (23 January 2008), pp. 1-15.
    by PD Schloss, J Handelsman
    edited by Bio M Central
    posted to statistics metagenomics by Olaf_Ilzins on 2008-04-29 20:11:25 as **
  • Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem
    PNAS, Vol. 104, No. 8. (20 February 2007), pp. 2761-2766.
    by Alban Ramette, James M Tiedje
    posted to statistics microbial_diversity indicators by Olaf_Ilzins on 2008-04-29 16:09:23 as ** along with 1 person CareyNadell
  • Exploring prokaryotic taxonomy
    Int J Syst Evol Microbiol, Vol. 54, No. 1. (1 January 2004), pp. 7-13.
    by Timothy G Lilburn, George M Garrity
    posted to bacterial_taxonomy by Olaf_Ilzins on 2008-04-29 16:01:20 as **
  • Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria.
    Appl Environ Microbiol, Vol. 71, No. 2. (February 2005), pp. 826-834.
    by KE Davis, SJ Joseph, PH Janssen
    posted to cultures 16s by Olaf_Ilzins on 2008-04-29 15:41:35 as ** along with 2 people and 1 group jdelcampo rvgomes Microbial-Ecology
  • Improved Culturability of Soil Bacteria and Isolation in Pure Culture of Novel Members of the Divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
    Appl. Environ. Microbiol., Vol. 68, No. 5. (1 May 2002), pp. 2391-2396.
    by Peter H Janssen, Penelope S Yates, Bronwyn E Grinton, Paul M Taylor, Michelle Sait
    posted to cultures 16s by Olaf_Ilzins on 2008-04-29 15:37:46 as **
  • Laboratory Cultivation of Widespread and Previously Uncultured Soil Bacteria
    Appl. Environ. Microbiol., Vol. 69, No. 12. (1 December 2003), pp. 7210-7215.
    by Shayne J Joseph, Philip Hugenholtz, Parveen Sangwan, Catherine A Osborne, Peter H Janssen
    posted to cultures 16s by Olaf_Ilzins on 2008-04-29 15:35:35 as **
  • Recent Advances in Petroleum Microbiology
    Microbiol. Mol. Biol. Rev., Vol. 67, No. 4. (1 December 2003), pp. 503-549.
    by Jonathan D Van Hamme, Ajay Singh, Owen P Ward
    posted to review petroleum by Olaf_Ilzins on 2008-04-23 17:02:52 as **
  • The shape of microbial diversity
    Environmental Microbiology, Vol. 7, No. 4. (April 2005), pp. 476-476.
    by Giovannoni Steve
    posted to review by Olaf_Ilzins on 2008-04-18 22:01:27 as **
  • Microbial diversity and soil functions
    European Journal of Soil Science, Vol. 54, No. 4. (2003), pp. 655-670.
    by P Nannipieri, J Ascher, MT Ceccherini, L Landi, G Pietramellara, G Renella
    posted to microbial_diversity review by Olaf_Ilzins on 2008-04-18 22:01:07 as **
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